Michaël Aupetit

Hyeon Jeon, Yun-Hsin Kuo, Michaël Aupetit et al.

A common way to evaluate the reliability of dimensionality reduction (DR) embeddings is to quantify how well labeled classes form compact, mutually separated clusters in the embeddings. This approach is based on the assumption that the classes stay as clear clusters in the original high-dimensional space. However, in reality, this assumption can be violated; a single class can be fragmented into multiple separated clusters, and multiple classes can be merged into a single cluster. We thus cannot always assure the credibility of the evaluation using class labels. In this paper, we introduce two novel quality measures -- Label-Trustworthiness and Label-Continuity (Label-T&C) -- advancing the process of DR evaluation based on class labels. Instead of assuming that classes are well-clustered in the original space, Label-T&C work by (1) estimating the extent to which classes form clusters in the original and embedded spaces and (2) evaluating the difference between the two. A quantitative evaluation showed that Label-T&C outperform widely used DR evaluation measures (e.g., Trustworthiness and Continuity, Kullback-Leibler divergence) in terms of the accuracy in assessing how well DR embeddings preserve the cluster structure, and are also scalable. Moreover, we present case studies demonstrating that Label-T&C can be successfully used for revealing the intrinsic characteristics of DR techniques and their hyperparameters.

Hyeon Jeon, Michaël Aupetit, DongHwa Shin et al.

Clustering techniques are often validated using benchmark datasets where class labels are used as ground-truth clusters. However, depending on the datasets, class labels may not align with the actual data clusters, and such misalignment hampers accurate validation. Therefore, it is essential to evaluate and compare datasets regarding their cluster-label matching (CLM), i.e., how well their class labels match actual clusters. Internal validation measures (IVMs), like Silhouette, can compare CLM over different labeling of the same dataset, but are not designed to do so across different datasets. We thus introduce Adjusted IVMs as fast and reliable methods to evaluate and compare CLM across datasets. We establish four axioms that require validation measures to be independent of data properties not related to cluster structure (e.g., dimensionality, dataset size). Then, we develop standardized protocols to convert any IVM to satisfy these axioms, and use these protocols to adjust six widely used IVMs. Quantitative experiments (1) verify the necessity and effectiveness of our protocols and (2) show that adjusted IVMs outperform the competitors, including standard IVMs, in accurately evaluating CLM both within and across datasets. We also show that the datasets can be filtered or improved using our method to form more reliable benchmarks for clustering validation.

Mohammad S. Ahmad, Zan A. Naeem, Michaël Aupetit et al.

Tabular data embedded within PDF files, web pages, and other document formats are prevalent across numerous sectors such as government, engineering, science, and business. These human-centric tables (HCTs) possess a unique combination of high business value, intricate layouts, limited operational power at scale, and sometimes serve as the only data source for critical insights. However, their complexity poses significant challenges to traditional data extraction, processing, and querying methods. While current solutions focus on transforming these tables into relational formats for SQL queries, they fall short in handling the diverse and complex layouts of HCTs and hence being amenable to querying. This paper describes HCT-QA, an extensive benchmark of HCTs, natural language queries, and related answers on thousands of tables. Our dataset includes 2,188 real-world HCTs with 9,835 QA pairs and 4,679 synthetic tables with 67.5K QA pairs. While HCTs can be potentially processed by different type of query engines, in this paper, we focus on Large Language Models as potential engines and assess their ability in processing and querying such tables.

Hyeon Jeon, Michaël Aupetit, Soohyun Lee et al.

Brushing is a common interaction technique in 2D scatterplots, allowing users to select clustered points within a continuous, enclosed region for further analysis or filtering. However, applying conventional brushing to 2D representations of multidimensional (MD) data, i.e., Multidimensional Projections (MDPs), can lead to unreliable cluster analysis due to MDP-induced distortions that inaccurately represent the cluster structure of the original MD data. To alleviate this problem, we introduce a novel brushing technique for MDPs called Distortion-aware brushing. As users perform brushing, Distortion-aware brushing corrects distortions around the currently brushed points by dynamically relocating points in the projection, pulling data points close to the brushed points in MD space while pushing distant ones apart. This dynamic adjustment helps users brush MD clusters more accurately, leading to more reliable cluster analysis. Our user studies with 24 participants show that Distortion-aware brushing significantly outperforms previous brushing techniques for MDPs in accurately separating clusters in the MD space and remains robust against distortions. We further demonstrate the effectiveness of our technique through two use cases: (1) conducting cluster analysis of geospatial data and (2) interactively labeling MD clusters.

Mostafa M. Abbas, Ehsan Ullah, Abdelkader Baggag et al.

Visual quality measures (VQMs) are designed to support analysts by automatically detecting and quantifying patterns in visualizations. We propose a new VQM for visual grouping patterns in scatterplots, called ClustML, which is trained on previously collected human subject judgments. Our model encodes scatterplots in the parametric space of a Gaussian Mixture Model and uses a classifier trained on human judgment data to estimate the perceptual complexity of grouping patterns. The numbers of initial mixture components and final combined groups. It improves on existing VQMs, first, by better estimating human judgments on two-Gaussian cluster patterns and, second, by giving higher accuracy when ranking general cluster patterns in scatterplots. We use it to analyze kinship data for genome-wide association studies, in which experts rely on the visual analysis of large sets of scatterplots. We make the benchmark datasets and the new VQM available for practical use and further improvements.