Denis Baručić

h-index2
2papers
24citations

2 Papers

1.4CVJul 1, 2022
Learning to segment from object sizes

Denis Baručić, Jan Kybic

Deep learning has proved particularly useful for semantic segmentation, a fundamental image analysis task. However, the standard deep learning methods need many training images with ground-truth pixel-wise annotations, which are usually laborious to obtain and, in some cases (e.g., medical images), require domain expertise. Therefore, instead of pixel-wise annotations, we focus on image annotations that are significantly easier to acquire but still informative, namely the size of foreground objects. We define the object size as the maximum Chebyshev distance between a foreground and the nearest background pixel. We propose an algorithm for training a deep segmentation network from a dataset of a few pixel-wise annotated images and many images with known object sizes. The algorithm minimizes a discrete (non-differentiable) loss function defined over the object sizes by sampling the gradient and then using the standard back-propagation algorithm. Experiments show that the new approach improves the segmentation performance.

2.4IVFeb 27, 2021
Automatic evaluation of human oocyte developmental potential from microscopy images

Denis Baručić, Jan Kybic, Olga Teplá et al.

Infertility is becoming an issue for an increasing number of couples. The most common solution, in vitro fertilization, requires embryologists to carefully examine light microscopy images of human oocytes to determine their developmental potential. We propose an automatic system to improve the speed, repeatability, and accuracy of this process. We first localize individual oocytes and identify their principal components using CNN (U-Net) segmentation. Next, we calculate several descriptors based on geometry and texture. The final step is an SVM classifier. Both the segmentation and classification training is based on expert annotations. The presented approach leads to a classification accuracy of 70%.