Chris Peterson

Yajing Liu, Christina M Cole, Chris Peterson et al.

A ReLU neural network leads to a finite polyhedral decomposition of input space and a corresponding finite dual graph. We show that while this dual graph is a coarse quantization of input space, it is sufficiently robust that it can be combined with persistent homology to detect homological signals of manifolds in the input space from samples. This property holds for a variety of networks trained for a wide range of purposes that have nothing to do with this topological application. We found this feature to be surprising and interesting; we hope it will also be useful.

Ehsan K. Ardestani, Changkyu Kim, Seung Jae Lee et al.

Deep Learning Recommendation Models (DLRM) are widespread, account for a considerable data center footprint, and grow by more than 1.5x per year. With model size soon to be in terabytes range, leveraging Storage ClassMemory (SCM) for inference enables lower power consumption and cost. This paper evaluates the major challenges in extending the memory hierarchy to SCM for DLRM, and presents different techniques to improve performance through a Software Defined Memory. We show how underlying technologies such as Nand Flash and 3DXP differentiate, and relate to real world scenarios, enabling from 5% to 29% power savings.

Ben Sattelberg, Renzo Cavalieri, Michael Kirby et al.

A ReLU neural network determines/is a continuous piecewise linear map from an input space to an output space. The weights in the neural network determine a decomposition of the input space into convex polytopes and on each of these polytopes the network can be described by a single affine mapping. The structure of the decomposition, together with the affine map attached to each polytope, can be analyzed to investigate the behavior of the associated neural network.

Xiaofeng Ma, Michael Kirby, Chris Peterson

The shape and orientation of data clouds reflect variability in observations that can confound pattern recognition systems. Subspace methods, utilizing Grassmann manifolds, have been a great aid in dealing with such variability. However, this usefulness begins to falter when the data cloud contains sufficiently many outliers corresponding to stray elements from another class or when the number of data points is larger than the number of features. We illustrate how nested subspace methods, utilizing flag manifolds, can help to deal with such additional confounding factors. Flag manifolds, which are parameter spaces for nested subspaces, are a natural geometric generalization of Grassmann manifolds. To make practical comparisons on a flag manifold, algorithms are proposed for determining the distances between points $[A], [B]$ on a flag manifold, where $A$ and $B$ are arbitrary orthogonal matrix representatives for $[A]$ and $[B]$, and for determining the initial direction of these minimal length geodesics. The approach is illustrated in the context of (hyper) spectral imagery showing the impact of ambient dimension, sample dimension, and flag structure.

Henry Kvinge, Elin Farnell, Michael Kirby et al.

A fundamental question in many data analysis settings is the problem of discerning the "natural" dimension of a data set. That is, when a data set is drawn from a manifold (possibly with noise), a meaningful aspect of the data is the dimension of that manifold. Various approaches exist for estimating this dimension, such as the method of Secant-Avoidance Projection (SAP). Intuitively, the SAP algorithm seeks to determine a projection which best preserves the lengths of all secants between points in a data set; by applying the algorithm to find the best projections to vector spaces of various dimensions, one may infer the dimension of the manifold of origination. That is, one may learn the dimension at which it is possible to construct a diffeomorphic copy of the data in a lower-dimensional Euclidean space. Using Whitney's embedding theorem, we can relate this information to the natural dimension of the data. A drawback of the SAP algorithm is that a data set with $T$ points has $O(T^2)$ secants, making the computation and storage of all secants infeasible for very large data sets. In this paper, we propose a novel algorithm that generalizes the SAP algorithm with an emphasis on addressing this issue. That is, we propose a hierarchical secant-based dimensionality-reduction method, which can be employed for data sets where explicitly calculating all secants is not feasible.

Henry Kvinge, Elin Farnell, Michael Kirby et al.

Dimensionality-reduction techniques are a fundamental tool for extracting useful information from high-dimensional data sets. Because secant sets encode manifold geometry, they are a useful tool for designing meaningful data-reduction algorithms. In one such approach, the goal is to construct a projection that maximally avoids secant directions and hence ensures that distinct data points are not mapped too close together in the reduced space. This type of algorithm is based on a mathematical framework inspired by the constructive proof of Whitney's embedding theorem from differential topology. Computing all (unit) secants for a set of points is by nature computationally expensive, thus opening the door for exploitation of GPU architecture for achieving fast versions of these algorithms. We present a polynomial-time data-reduction algorithm that produces a meaningful low-dimensional representation of a data set by iteratively constructing improved projections within the framework described above. Key to our algorithm design and implementation is the use of GPUs which, among other things, minimizes the computational time required for the calculation of all secant lines. One goal of this report is to share ideas with GPU experts and to discuss a class of mathematical algorithms that may be of interest to the broader GPU community.

Elin Farnell, Henry Kvinge, Michael Kirby et al.

Endmember extraction plays a prominent role in a variety of data analysis problems as endmembers often correspond to data representing the purest or best representative of some feature. Identifying endmembers then can be useful for further identification and classification tasks. In settings with high-dimensional data, such as hyperspectral imagery, it can be useful to consider endmembers that are subspaces as they are capable of capturing a wider range of variations of a signature. The endmember extraction problem in this setting thus translates to finding the vertices of the convex hull of a set of points on a Grassmannian. In the presence of noise, it can be less clear whether a point should be considered a vertex. In this paper, we propose an algorithm to extract endmembers on a Grassmannian, identify subspaces of interest that lie near the boundary of a convex hull, and demonstrate the use of the algorithm on a synthetic example and on the 220 spectral band AVIRIS Indian Pines hyperspectral image.

Henry Adams, Sofya Chepushtanova, Tegan Emerson et al.

Many datasets can be viewed as a noisy sampling of an underlying space, and tools from topological data analysis can characterize this structure for the purpose of knowledge discovery. One such tool is persistent homology, which provides a multiscale description of the homological features within a dataset. A useful representation of this homological information is a persistence diagram (PD). Efforts have been made to map PDs into spaces with additional structure valuable to machine learning tasks. We convert a PD to a finite-dimensional vector representation which we call a persistence image (PI), and prove the stability of this transformation with respect to small perturbations in the inputs. The discriminatory power of PIs is compared against existing methods, showing significant performance gains. We explore the use of PIs with vector-based machine learning tools, such as linear sparse support vector machines, which identify features containing discriminating topological information. Finally, high accuracy inference of parameter values from the dynamic output of a discrete dynamical system (the linked twist map) and a partial differential equation (the anisotropic Kuramoto-Sivashinsky equation) provide a novel application of the discriminatory power of PIs.

Lori Ziegelmeier, Michael Kirby, Chris Peterson

The ability to characterize the color content of natural imagery is an important application of image processing. The pixel by pixel coloring of images may be viewed naturally as points in color space, and the inherent structure and distribution of these points affords a quantization, through clustering, of the color information in the image. In this paper, we present a novel topologically driven clustering algorithm that permits segmentation of the color features in a digital image. The algorithm blends Locally Linear Embedding (LLE) and vector quantization by mapping color information to a lower dimensional space, identifying distinct color regions, and classifying pixels together based on both a proximity measure and color content. It is observed that these techniques permit a significant reduction in color resolution while maintaining the visually important features of images.