Deep Learning in Single-Cell AnalysisDylan Molho, Jiayuan Ding, Zhaoheng Li et al.
Single-cell technologies are revolutionizing the entire field of biology. The large volumes of data generated by single-cell technologies are high-dimensional, sparse, heterogeneous, and have complicated dependency structures, making analyses using conventional machine learning approaches challenging and impractical. In tackling these challenges, deep learning often demonstrates superior performance compared to traditional machine learning methods. In this work, we give a comprehensive survey on deep learning in single-cell analysis. We first introduce background on single-cell technologies and their development, as well as fundamental concepts of deep learning including the most popular deep architectures. We present an overview of the single-cell analytic pipeline pursued in research applications while noting divergences due to data sources or specific applications. We then review seven popular tasks spanning through different stages of the single-cell analysis pipeline, including multimodal integration, imputation, clustering, spatial domain identification, cell-type deconvolution, cell segmentation, and cell-type annotation. Under each task, we describe the most recent developments in classical and deep learning methods and discuss their advantages and disadvantages. Deep learning tools and benchmark datasets are also summarized for each task. Finally, we discuss the future directions and the most recent challenges. This survey will serve as a reference for biologists and computer scientists, encouraging collaborations.
16.7IRMay 27Code
Fine-Tuned LLM as a Complementary Predictor Improving Ads SystemHui Yang, Daiwei He, Kevin Jiang et al.
Recommendation systems power engagement and monetization across feeds, ads, and short-video platforms, but translating the latest advances in Large Language Models into Recommendation Systems (RecSys) gains remains rare, particularly in advertising and production-scale real-world industry setups. Prior real-world LLM successes typically fall into three buckets: (a) generative retrieval that directly predicts the next items for candidate generation, (b) late-stage re-ranking that uses LLMs, and (c) auxiliary signal enrichment with LLMs. We introduce a complementary paradigm for ads: a fine-tuned open-source LLM used not as a ranker, but as an ads-specific ancillary predictor, forecasting likely advertisers from user profiles and histories. This LLM-driven advertiser prediction augments conventional candidate generation and provides informative priors to downstream ranking. Developed in a large-scale production advertising system, our approach produces substantial offline improvements and measurable online business impact, demonstrating that LLM world knowledge and predictive capacity can be efficiently harnessed. Beyond validating LLMs for ads applications, our results show that targeted ancillary predictions can unlock end-to-end gains across both retrieval and late-stage ranking, offering a practical path to LLM-enhanced recommendation at scale.
9.8DBMar 30
Can Large Language Models be a Cardinality Estimator? An Empirical studyLiangzu Liu, Yiyan Wang, Yinjun Wu et al.
Cardinality estimation (CardEst) still remains a challenging problem for DBMS. Recent years have witnessed the success of ML-based cardinality estimators in outperforming traditional methods. However, these solutions suffer from poor generalizability to new data or query distribution, inability to handle complex queries, and substantial data preparation overhead, thus preventing their wide adoption in the real-world DBMS. Some recent efforts have been dedicated to addressing some but not all of these issues. We notice that the recent emerging Large Language Models (LLMs) have shown their remarkable generalizability to unseen tasks, capabilities to understand complex programs, and power to perform data-efficient fine-tuning. In light of this, we propose to leverage LLMs to mitigate the above issues. Specifically, we carefully craft prompts, and subsequently perform fine-tuning and self-correction during inference with LLMs for CardEst task. We then extensively evaluate LLMs' in-distribution and out-of-distribution generalizability, feasibility to support complex queries, and training data efficiency during fine-tuning LLMs on pre-training datasets. The results suggest that LLMs outperform the state-of-the-art in almost all settings, thus indicating their potential for the CardEst task. We further measure the end-to-end query execution time in DBMS by using the estimated cardinalities of LLMs in some practical settings, which suggests that the inference overhead of LLMs can be outweighed by the benefits brought by LLMs for CardEst.
2.3MMOct 23, 2020
Short Video-based Advertisements Evaluation System: Self-Organizing Learning ApproachYunjie Zhang, Fei Tao, Xudong Liu et al.
With the rising of short video apps, such as TikTok, Snapchat and Kwai, advertisement in short-term user-generated videos (UGVs) has become a trending form of advertising. Prediction of user behavior without specific user profile is required by advertisers, as they expect to acquire advertisement performance in advance in the scenario of cold start. Current recommender system do not take raw videos as input; additionally, most previous work of Multi-Modal Machine Learning may not deal with unconstrained videos like UGVs. In this paper, we proposed a novel end-to-end self-organizing framework for user behavior prediction. Our model is able to learn the optimal topology of neural network architecture, as well as optimal weights, through training data. We evaluate our proposed method on our in-house dataset. The experimental results reveal that our model achieves the best performance in all our experiments.
2.3MMOct 19, 2020
Ensemble Chinese End-to-End Spoken Language Understanding for Abnormal Event Detection from audio streamHaoran Wei, Fei Tao, Runze Su et al.
Conventional spoken language understanding (SLU) consist of two stages, the first stage maps speech to text by automatic speech recognition (ASR), and the second stage maps text to intent by natural language understanding (NLU). End-to-end SLU maps speech directly to intent through a single deep learning model. Previous end-to-end SLU models are primarily used for English environment due to lacking large scale SLU dataset in Chines, and use only one ASR model to extract features from speech. With the help of Kuaishou technology, a large scale SLU dataset in Chinese is collected to detect abnormal event in their live audio stream. Based on this dataset, this paper proposed a ensemble end-to-end SLU model used for Chinese environment. This ensemble SLU models extracted hierarchies features using multiple pre-trained ASR models, leading to better representation of phoneme level and word level information. This proposed approached achieve 9.7% increase of accuracy compared to previous end-to-end SLU model.
5.7AISep 14, 2020
Themes Informed Audio-visual Correspondence LearningRunze Su, Fei Tao, Xudong Liu et al.
The applications of short-term user-generated video (UGV), such as Snapchat, and Youtube short-term videos, booms recently, raising lots of multimodal machine learning tasks. Among them, learning the correspondence between audio and visual information from videos is a challenging one. Most previous work of the audio-visual correspondence(AVC) learning only investigated constrained videos or simple settings, which may not fit the application of UGV. In this paper, we proposed new principles for AVC and introduced a new framework to set sight of videos' themes to facilitate AVC learning. We also released the KWAI-AD-AudVis corpus which contained 85432 short advertisement videos (around 913 hours) made by users. We evaluated our proposed approach on this corpus, and it was able to outperform the baseline by 23.15% absolute difference.