L. F. Abbott

h-index60
2papers
18,632citations

2 Papers

18.3NCApr 14, 2021
Neural population geometry: An approach for understanding biological and artificial neural networks

SueYeon Chung, L. F. Abbott

Advances in experimental neuroscience have transformed our ability to explore the structure and function of neural circuits. At the same time, advances in machine learning have unleashed the remarkable computational power of artificial neural networks (ANNs). While these two fields have different tools and applications, they present a similar challenge: namely, understanding how information is embedded and processed through high-dimensional representations to solve complex tasks. One approach to addressing this challenge is to utilize mathematical and computational tools to analyze the geometry of these high-dimensional representations, i.e., neural population geometry. We review examples of geometrical approaches providing insight into the function of biological and artificial neural networks: representation untangling in perception, a geometric theory of classification capacity, disentanglement and abstraction in cognitive systems, topological representations underlying cognitive maps, dynamic untangling in motor systems, and a dynamical approach to cognition. Together, these findings illustrate an exciting trend at the intersection of machine learning, neuroscience, and geometry, in which neural population geometry provides a useful population-level mechanistic descriptor underlying task implementation. Importantly, geometric descriptions are applicable across sensory modalities, brain regions, network architectures and timescales. Thus, neural population geometry has the potential to unify our understanding of structure and function in biological and artificial neural networks, bridging the gap between single neurons, populations and behavior.

14.0LGAug 22, 2016
LFADS - Latent Factor Analysis via Dynamical Systems

David Sussillo, Rafal Jozefowicz, L. F. Abbott et al.

Neuroscience is experiencing a data revolution in which many hundreds or thousands of neurons are recorded simultaneously. Currently, there is little consensus on how such data should be analyzed. Here we introduce LFADS (Latent Factor Analysis via Dynamical Systems), a method to infer latent dynamics from simultaneously recorded, single-trial, high-dimensional neural spiking data. LFADS is a sequential model based on a variational auto-encoder. By making a dynamical systems hypothesis regarding the generation of the observed data, LFADS reduces observed spiking to a set of low-dimensional temporal factors, per-trial initial conditions, and inferred inputs. We compare LFADS to existing methods on synthetic data and show that it significantly out-performs them in inferring neural firing rates and latent dynamics.