Yuanhe Tian

CL
h-index13
30papers
4,315citations
Novelty48%
AI Score58

30 Papers

CLNov 10, 2023Code
ChiMed-GPT: A Chinese Medical Large Language Model with Full Training Regime and Better Alignment to Human Preferences

Yuanhe Tian, Ruyi Gan, Yan Song et al.

Recently, the increasing demand for superior medical services has highlighted the discrepancies in the medical infrastructure. With big data, especially texts, forming the foundation of medical services, there is an exigent need for effective natural language processing (NLP) solutions tailored to the healthcare domain. Conventional approaches leveraging pre-trained models present promising results in this domain and current large language models (LLMs) offer advanced foundation for medical text processing. However, most medical LLMs are trained only with supervised fine-tuning (SFT), even though it efficiently empowers LLMs to understand and respond to medical instructions but is ineffective in learning domain knowledge and aligning with human preference. In this work, we propose ChiMed-GPT, a new benchmark LLM designed explicitly for Chinese medical domain, and undergoes a comprehensive training regime with pre-training, SFT, and RLHF. Evaluations on tasks including information extraction, question answering, and dialogue generation demonstrate ChiMed-GPT's superior performance over general domain LLMs. Furthermore, we analyze possible biases through prompting ChiMed-GPT to perform attitude scales regarding discrimination of patients, so as to contribute to further responsible development of LLMs in the medical domain. The code and model are released at https://github.com/synlp/ChiMed-GPT.

CLNov 6, 2023Code
Ziya2: Data-centric Learning is All LLMs Need

Ruyi Gan, Ziwei Wu, Renliang Sun et al.

Various large language models (LLMs) have been proposed in recent years, including closed- and open-source ones, continually setting new records on multiple benchmarks. However, the development of LLMs still faces several issues, such as high cost of training models from scratch, and continual pre-training leading to catastrophic forgetting, etc. Although many such issues are addressed along the line of research on LLMs, an important yet practical limitation is that many studies overly pursue enlarging model sizes without comprehensively analyzing and optimizing the use of pre-training data in their learning process, as well as appropriate organization and leveraging of such data in training LLMs under cost-effective settings. In this work, we propose Ziya2, a model with 13 billion parameters adopting LLaMA2 as the foundation model, and further pre-trained on 700 billion tokens, where we focus on pre-training techniques and use data-centric optimization to enhance the learning process of Ziya2 on different stages. We define three data attributes and firstly establish data-centric scaling laws to illustrate how different data impacts LLMs. Experiments show that Ziya2 significantly outperforms other models in multiple benchmarks especially with promising results compared to representative open-source ones. Ziya2 (Base) is released at https://huggingface.co/IDEA-CCNL/Ziya2-13B-Base and https://modelscope.cn/models/Fengshenbang/Ziya2-13B-Base/summary.

91.8MAMay 19
APS: Bias-Controlled Adaptive Prototype Simulation for Population-Scale LLM Agents

Quan Zheng, Yan Gao, Shaobin He et al.

LLM-agent simulation offers a flexible computational tool for studying population response trajectories that depend on scenario events, memory, demographics, and evolving social context. However, full multi-round simulation scales linearly with both population size and horizon, requiring every agent to query the LLM at every round. We propose Adaptive Prototype Simulation (APS), a framework that reframes scalable LLM-based simulation as a recurrent oracle-allocation problem. APS retains the designated LLM as the online transition oracle while querying adaptive core prototypes, selected singleton-tail agents, and shadow-audit agents. Prototype responses induce local response surfaces for nearby agents, reducing online LLM calls without replacing the underlying transition model. To control approximation bias, shadow-audit residual correction estimates propagation residuals for aggregate correction and future budget allocation, while tail-protected singleton routing directly queries selected isolated, heterogeneous, or high-curvature regions that are vulnerable to smoothing. Theoretically, we treat APS as an estimator for full-scale high-precision individual social simulation and decompose its errors into prototype-coverage error, shadow-audit residual-correction error, local-propagation bias, and temporal context mismatch. Under the reported protocols, APS gives lower reference-aligned distributional discrepancy than scale-oriented and same-budget baselines while reducing online LLM calls, with ablations and compact robustness checks diagnosing the main bias-control mechanisms. In a 10M-agent, multi-round public-opinion simulation, APS achieves a 381.1-fold reduction over full simulation, with reference-aligned final-round JSD of 0.094 against the corresponding full-LLM reference.

CVNov 23, 2023
A Systematic Review of Deep Learning-based Research on Radiology Report Generation

Chang Liu, Yuanhe Tian, Yan Song

Radiology report generation (RRG) aims to automatically generate free-text descriptions from clinical radiographs, e.g., chest X-Ray images. RRG plays an essential role in promoting clinical automation and presents significant help to provide practical assistance for inexperienced doctors and alleviate radiologists' workloads. Therefore, consider these meaningful potentials, research on RRG is experiencing explosive growth in the past half-decade, especially with the rapid development of deep learning approaches. Existing studies perform RRG from the perspective of enhancing different modalities, provide insights on optimizing the report generation process with elaborated features from both visual and textual information, and further facilitate RRG with the cross-modal interactions among them. In this paper, we present a comprehensive review of deep learning-based RRG from various perspectives. Specifically, we firstly cover pivotal RRG approaches based on the task-specific features of radiographs, reports, and the cross-modal relations between them, and then illustrate the benchmark datasets conventionally used for this task with evaluation metrics, subsequently analyze the performance of different approaches and finally offer our summary on the challenges and the trends in future directions. Overall, the goal of this paper is to serve as a tool for understanding existing literature and inspiring potential valuable research in the field of RRG.

CVNov 14, 2023
Improving Image Captioning via Predicting Structured Concepts

Ting Wang, Weidong Chen, Yuanhe Tian et al.

Having the difficulty of solving the semantic gap between images and texts for the image captioning task, conventional studies in this area paid some attention to treating semantic concepts as a bridge between the two modalities and improved captioning performance accordingly. Although promising results on concept prediction were obtained, the aforementioned studies normally ignore the relationship among concepts, which relies on not only objects in the image, but also word dependencies in the text, so that offers a considerable potential for improving the process of generating good descriptions. In this paper, we propose a structured concept predictor (SCP) to predict concepts and their structures, then we integrate them into captioning, so as to enhance the contribution of visual signals in this task via concepts and further use their relations to distinguish cross-modal semantics for better description generation. Particularly, we design weighted graph convolutional networks (W-GCN) to depict concept relations driven by word dependencies, and then learns differentiated contributions from these concepts for following decoding process. Therefore, our approach captures potential relations among concepts and discriminatively learns different concepts, so that effectively facilitates image captioning with inherited information across modalities. Extensive experiments and their results demonstrate the effectiveness of our approach as well as each proposed module in this work.

73.0CVMay 23
SliceWorld: A Predictive and Controllable World-State Model for CT Report Generation

Yuanhe Tian, Yan Song

CT report generation (CTRG) requires models to summarize three-dimensional anatomical context and pathological findings from hundreds of axial slices. Existing methods typically learn a direct image-to-text mapping, providing limited mechanisms for modeling how CT evidence evolves across slices or how reports respond to controlled changes in latent lesion-related factors. We propose SliceWorld, a CT-specific world-state framework that treats an axial CT scan as an ordered sequence along the z-axis. SliceWorld encodes prefix CT evidence into factor-aware latent states containing anatomy, lesion, and uncertainty components, and projects these states into world tokens used for multi-step future-slice feature prediction, lesion-factor intervention, and LLM-based report generation. The model is first pretrained on CT slice sequences with predictive, factor-aware, and counterfactual objectives, and is then fine-tuned on paired CT-report data. Experiments on M3D-Cap and CT-RATE show that SliceWorld improves natural language generation metrics and clinically oriented automatic evaluation. Further analyses demonstrate multi-horizon future-slice prediction, measurable factor alignment, reduced-slice robustness, and selective lesion-sensitive report modulation.

91.2SIMay 20
SURGE: An Event-Centric Social Media Sentiment Time Series Benchmark with Interaction Structure

Chen Su, Pengsen Cheng, Yuanhe Tian et al.

Public events on social media generate large volumes of discussion whose collective dynamics carry direct value for opinion forecasting and crisis response. Capturing how these dynamics evolve across an event's lifecycle requires organizing fragmented posts into event-level time series. Existing datasets cover only a small number of events within a single category, and typically discard the interaction structure between posts when constructing time series, which restricts both transfer across event types and controlled study of how interactions shape the resulting collective dynamics. We present SURGE, a multi-event social media benchmark that pairs event-level time series with aligned text and interaction structure linking posts within an event. SURGE is built through an automated pipeline that produces calendar-aligned time series at three temporal granularities, covering 67 events and more than 800K posts across five event categories. Each time bin is paired with flat and structured textual views derived from the same selected posts, enabling controlled evaluation of whether social interaction structure affects forecasting behavior. On top of SURGE we define benchmark protocols for numerical-only forecasting, text-augmented forecasting, high-interaction evaluation, and leave-one-category-out generalization. Experiments with representative time-series and multimodal forecasting models reveal three properties of the benchmark: a strong local-persistence regime in which naive baselines remain hard to beat under absolute error, limited transfer of existing text-augmented forecasters to event-driven social-media data, and increased difficulty on reply-dense periods that aggregate metrics tend to obscure. We further include a lightweight structure-aware probe as a reference implementation, illustrating how SURGE can support interaction-aware forecasting research.

CLDec 27, 2025
Chain-of-thought Reviewing and Correction for Time Series Question Answering

Chen Su, Yuanhe Tian, Yan Song

With the advancement of large language models (LLMs), diverse time series analysis tasks are reformulated as time series question answering (TSQA) through a unified natural language interface. However, existing LLM-based approaches largely adopt general natural language processing techniques and are prone to reasoning errors when handling complex numerical sequences. Different from purely textual tasks, time series data are inherently verifiable, enabling consistency checking between reasoning steps and the original input. Motivated by this property, we propose T3LLM, which performs multi-step reasoning with an explicit correction mechanism for time series question answering. The T3LLM framework consists of three LLMs, namely, a worker, a reviewer, and a student, that are responsible for generation, review, and reasoning learning, respectively. Within this framework, the worker generates step-wise chains of thought (CoT) under structured prompts, while the reviewer inspects the reasoning, identifies erroneous steps, and provides corrective comments. The collaboratively generated corrected CoT are used to fine-tune the student model, internalizing multi-step reasoning and self-correction into its parameters. Experiments on multiple real-world TSQA benchmarks demonstrate that T3LLM achieves state-of-the-art performance over strong LLM-based baselines.

CVDec 7, 2023Code
iDesigner: A High-Resolution and Complex-Prompt Following Text-to-Image Diffusion Model for Interior Design

Ruyi Gan, Xiaojun Wu, Junyu Lu et al.

With the open-sourcing of text-to-image models (T2I) such as stable diffusion (SD) and stable diffusion XL (SD-XL), there is an influx of models fine-tuned in specific domains based on the open-source SD model, such as in anime, character portraits, etc. However, there are few specialized models in certain domains, such as interior design, which is attributed to the complex textual descriptions and detailed visual elements inherent in design, alongside the necessity for adaptable resolution. Therefore, text-to-image models for interior design are required to have outstanding prompt-following capabilities, as well as iterative collaboration with design professionals to achieve the desired outcome. In this paper, we collect and optimize text-image data in the design field and continue training in both English and Chinese on the basis of the open-source CLIP model. We also proposed a fine-tuning strategy with curriculum learning and reinforcement learning from CLIP feedback to enhance the prompt-following capabilities of our approach so as to improve the quality of image generation. The experimental results on the collected dataset demonstrate the effectiveness of the proposed approach, which achieves impressive results and outperforms strong baselines.

LGFeb 6
Training Data Selection with Gradient Orthogonality for Efficient Domain Adaptation

Xiyang Zhang, Yuanhe Tian, Hongzhi Wang et al.

Fine-tuning large language models (LLMs) for specialized domains often necessitates a trade-off between acquiring domain expertise and retaining general reasoning capabilities, a phenomenon known as catastrophic forgetting. Existing remedies face a dichotomy: gradient surgery methods offer geometric safety but incur prohibitive computational costs via online projections, while efficient data selection approaches reduce overhead but remain blind to conflict-inducing gradient directions. In this paper, we propose Orthogonal Gradient Selection (OGS), a data-centric method that harmonizes domain performance, general capability retention, and training efficiency. OGS shifts the geometric insights of gradient projection from the optimizer to the data selection stage by treating data selection as a constrained decision-making process. By leveraging a lightweight Navigator model and reinforcement learning techniques, OGS dynamically identifies training samples whose gradients are orthogonal to a general-knowledge anchor. This approach ensures naturally safe updates for target models without modifying the optimizer or incurring runtime projection costs. Experiments across medical, legal, and financial domains demonstrate that OGS achieves excellent results, significantly improving domain performance and training efficiency while maintaining or even enhancing performance on general tasks such as GSM8K.

CLFeb 4
LEAD: Layer-wise Expert-aligned Decoding for Faithful Radiology Report Generation

Ruixiao Yang, Yuanhe Tian, Xu Yang et al.

Radiology Report Generation (RRG) aims to produce accurate and coherent diagnostics from medical images. Although large vision language models (LVLM) improve report fluency and accuracy, they exhibit hallucinations, generating plausible yet image-ungrounded pathological details. Existing methods primarily rely on external knowledge guidance to facilitate the alignment between generated text and visual information. However, these approaches often ignore the inherent decoding priors and vision-language alignment biases in pretrained models and lack robustness due to reliance on constructed guidance. In this paper, we propose Layer-wise Expert-aligned Decoding (LEAD), a novel method to inherently modify the LVLM decoding trajectory. A multiple experts module is designed for extracting distinct pathological features which are integrated into each decoder layer via a gating mechanism. This layer-wise architecture enables the LLM to consult expert features at every inference step via a learned gating function, thereby dynamically rectifying decoding biases and steering the generation toward factual consistency. Experiments conducted on multiple public datasets demonstrate that the LEAD method yields effective improvements in clinical accuracy metrics and mitigates hallucinations while preserving high generation quality.

CLJun 15, 2025
Large Language Models Enhanced by Plug and Play Syntactic Knowledge for Aspect-based Sentiment Analysis

Yuanhe Tian, Xu Li, Wei Wang et al.

Aspect-based sentiment analysis (ABSA) generally requires a deep understanding of the contextual information, including the words associated with the aspect terms and their syntactic dependencies. Most existing studies employ advanced encoders (e.g., pre-trained models) to capture such context, especially large language models (LLMs). However, training these encoders is resource-intensive, and in many cases, the available data is insufficient for necessary fine-tuning. Therefore it is challenging for learning LLMs within such restricted environments and computation efficiency requirement. As a result, it motivates the exploration of plug-and-play methods that adapt LLMs to ABSA with minimal effort. In this paper, we propose an approach that integrates extendable components capable of incorporating various types of syntactic knowledge, such as constituent syntax, word dependencies, and combinatory categorial grammar (CCG). Specifically, we propose a memory module that records syntactic information and is incorporated into LLMs to instruct the prediction of sentiment polarities. Importantly, this encoder acts as a versatile, detachable plugin that is trained independently of the LLM. We conduct experiments on benchmark datasets, which show that our approach outperforms strong baselines and previous approaches, thus demonstrates its effectiveness.

CLJun 8, 2025
Representation Decomposition for Learning Similarity and Contrastness Across Modalities for Affective Computing

Yuanhe Tian, Pengsen Cheng, Guoqing Jin et al.

Multi-modal affective computing aims to automatically recognize and interpret human attitudes from diverse data sources such as images and text, thereby enhancing human-computer interaction and emotion understanding. Existing approaches typically rely on unimodal analysis or straightforward fusion of cross-modal information that fail to capture complex and conflicting evidence presented across different modalities. In this paper, we propose a novel LLM-based approach for affective computing that explicitly deconstructs visual and textual representations into shared (modality-invariant) and modality-specific components. Specifically, our approach firstly encodes and aligns input modalities using pre-trained multi-modal encoders, then employs a representation decomposition framework to separate common emotional content from unique cues, and finally integrates these decomposed signals via an attention mechanism to form a dynamic soft prompt for a multi-modal LLM. Extensive experiments on three representative tasks for affective computing, namely, multi-modal aspect-based sentiment analysis, multi-modal emotion analysis, and hateful meme detection, demonstrate the effectiveness of our approach, which consistently outperforms strong baselines and state-of-the-art models.

CLApr 28, 2025
Multimodal Conditioned Diffusive Time Series Forecasting

Chen Su, Yuanhe Tian, Yan Song

Diffusion models achieve remarkable success in processing images and text, and have been extended to special domains such as time series forecasting (TSF). Existing diffusion-based approaches for TSF primarily focus on modeling single-modality numerical sequences, overlooking the rich multimodal information in time series data. To effectively leverage such information for prediction, we propose a multimodal conditioned diffusion model for TSF, namely, MCD-TSF, to jointly utilize timestamps and texts as extra guidance for time series modeling, especially for forecasting. Specifically, Timestamps are combined with time series to establish temporal and semantic correlations among different data points when aggregating information along the temporal dimension. Texts serve as supplementary descriptions of time series' history, and adaptively aligned with data points as well as dynamically controlled in a classifier-free manner. Extensive experiments on real-world benchmark datasets across eight domains demonstrate that the proposed MCD-TSF model achieves state-of-the-art performance.

CLJul 14, 2025
Fusing Large Language Models with Temporal Transformers for Time Series Forecasting

Chen Su, Yuanhe Tian, Qinyu Liu et al.

Recently, large language models (LLMs) have demonstrated powerful capabilities in performing various tasks and thus are applied by recent studies to time series forecasting (TSF) tasks, which predict future values with the given historical time series. Existing LLM-based approaches transfer knowledge learned from text data to time series prediction using prompting or fine-tuning strategies. However, LLMs are proficient at reasoning over discrete tokens and semantic patterns but are not initially designed to model continuous numerical time series data. The gaps between text and time series data lead LLMs to achieve inferior performance to a vanilla Transformer model that is directly trained on TSF data. However, the vanilla Transformers often struggle to learn high-level semantic patterns. In this paper, we design a novel Transformer-based architecture that complementarily leverages LLMs and vanilla Transformers, so as to integrate the high-level semantic representations learned by LLMs into the temporal information encoded by time series Transformers, where a hybrid representation is obtained by fusing the representations from the LLM and the Transformer. The resulting fused representation contains both historical temporal dynamics and semantic variation patterns, allowing our model to predict more accurate future values. Experiments on benchmark datasets demonstrate the effectiveness of the proposed approach.

LGMay 4, 2025
DNAZEN: Enhanced Gene Sequence Representations via Mixed Granularities of Coding Units

Lei Mao, Yuanhe Tian, Yan Song

Genome modeling conventionally treats gene sequence as a language, reflecting its structured motifs and long-range dependencies analogous to linguistic units and organization principles such as words and syntax. Recent studies utilize advanced neural networks, ranging from convolutional and recurrent models to Transformer-based models, to capture contextual information of gene sequence, with the primary goal of obtaining effective gene sequence representations and thus enhance the models' understanding of various running gene samples. However, these approaches often directly apply language modeling techniques to gene sequences and do not fully consider the intrinsic information organization in them, where they do not consider how units at different granularities contribute to representation. In this paper, we propose DNAZEN, an enhanced genomic representation framework designed to learn from various granularities in gene sequences, including small polymers and G-grams that are combinations of several contiguous polymers. Specifically, we extract the G-grams from large-scale genomic corpora through an unsupervised approach to construct the G-gram vocabulary, which is used to provide G-grams in the learning process of DNA sequences through dynamically matching from running gene samples. A Transformer-based G-gram encoder is also proposed and the matched G-grams are fed into it to compute their representations and integrated into the encoder for basic unit (E4BU), which is responsible for encoding small units and maintaining the learning and inference process. To further enhance the learning process, we propose whole G-gram masking to train DNAZEN, where the model largely favors the selection of each entire G-gram to mask rather than an ordinary masking mechanism performed on basic units. Experiments on benchmark datasets demonstrate the effectiveness of DNAZEN on various downstream tasks.

43.4MMApr 7
Learning Shared Sentiment Prototypes for Adaptive Multimodal Sentiment Analysis

Chen Su, Yuanhe Tian, Yan Song

Multimodal sentiment analysis (MSA) aims to predict human sentiment from textual, acoustic, and visual information in videos. Recent studies improve multimodal fusion by modeling modality interaction and assigning different modality weights. However, they usually compress diverse sentiment cues into a single compact representation before sentiment reasoning. This early aggregation makes it difficult to preserve the internal structure of sentiment evidence, where different cues may complement, conflict with, or differ in reliability from each other. In addition, modality importance is often determined only once during fusion, so later reasoning cannot further adjust modality contributions. To address these issues, we propose PRISM, a framework that unifies structured affective extraction and adaptive modality evaluation. PRISM organizes multimodal evidence in a shared prototype space, which supports structured cross-modal comparison and adaptive fusion. It further applies dynamic modality reweighting during reasoning, allowing modality contributions to be continuously refined as semantic interactions become deeper. Experiments on three benchmark datasets show that PRISM outperforms representative baselines.

CLAug 31, 2025
Text Reinforcement for Multimodal Time Series Forecasting

Chen Su, Yuanhe Tian, Yan Song et al.

Recent studies in time series forecasting (TSF) use multimodal inputs, such as text and historical time series data, to predict future values. These studies mainly focus on developing advanced techniques to integrate textual information with time series data to perform the task and achieve promising results. Meanwhile, these approaches rely on high-quality text and time series inputs, whereas in some cases, the text does not accurately or fully capture the information carried by the historical time series, which leads to unstable performance in multimodal TSF. Therefore, it is necessary to enhance the textual content to improve the performance of multimodal TSF. In this paper, we propose improving multimodal TSF by reinforcing the text modalities. We propose a text reinforcement model (TeR) to generate reinforced text that addresses potential weaknesses in the original text, then apply this reinforced text to support the multimodal TSF model's understanding of the time series, improving TSF performance. To guide the TeR toward producing higher-quality reinforced text, we design a reinforcement learning approach that assigns rewards based on the impact of each reinforced text on the performance of the multimodal TSF model and its relevance to the TSF task. We optimize the TeR accordingly, so as to improve the quality of the generated reinforced text and enhance TSF performance. Extensive experiments on a real-world benchmark dataset covering various domains demonstrate the effectiveness of our approach, which outperforms strong baselines and existing studies on the dataset.

MLJul 19, 2025
Diffusion Models for Time Series Forecasting: A Survey

Chen Su, Zhengzhou Cai, Yuanhe Tian et al.

Diffusion models, initially developed for image synthesis, demonstrate remarkable generative capabilities. Recently, their application has expanded to time series forecasting (TSF), yielding promising results. Existing surveys on time series primarily focus on the application of diffusion models to time series tasks or merely provide model-by-model introductions of diffusion-based TSF models, without establishing a systematic taxonomy for existing diffusion-based TSF models. In this survey, we firstly introduce several standard diffusion models and their prevalent variants, explaining their adaptation to TSF tasks. Then, we provide a comprehensive review of diffusion models for TSF, paying special attention to the sources of conditional information and the mechanisms for integrating this conditioning within the models. In analyzing existing approaches using diffusion models for TSF, we provide a systematic categorization and a comprehensive summary of them in this survey. Furthermore, we examine several foundational diffusion models applied to TSF, alongside commonly used datasets and evaluation metrics. Finally, we discuss the progress and limitations of these approaches, as well as potential future research directions for diffusion-based TSF. Overall, this survey offers a comprehensive overview of recent progress and future prospects for diffusion models in TSF, serving as a valuable reference for researchers in the field.

CLJul 13, 2025
Balanced Training Data Augmentation for Aspect-Based Sentiment Analysis

Junjie Liu, Yuanhe Tian, Yan Song

Aspect-based sentiment analysis (ABSA) is a crucial fine-grained task in social media scenarios to identify the sentiment polarity of specific aspect terms in a sentence. Although many existing studies leverage large language models (LLMs) to perform ABSA due to their strong context understanding capabilities, they still face challenges to learn the context information in the running text because of the short text, as well as the small and unbalanced labeled training data, where most data are labeled with positive sentiment. Data augmentation (DA) is a feasible strategy for providing richer contextual information, especially when using LLMs to create synthetic training data, but faces challenges in ensuring a high quality of the augmented data.In this paper, we propose an LLM-based ABSA approach with training data augmentation.Specifically, an LLM is prompted to generate augmented training data based on the original training data, so as to construct a new training data with larger size and balanced label distributions to better train an ABSA model. Meanwhile, in order to improve the quality of the augmented data, we propose a reinforcement learning approach to optimize the data augmentation. LLM.Experiment results and further analyses on English benchmark datasets for ABSA demonstrate the effectiveness of our approach, where superior performance is observed over strong baselines and most existing studies.

CVJul 6, 2025
Computed Tomography Visual Question Answering with Cross-modal Feature Graphing

Yuanhe Tian, Chen Su, Junwen Duan et al.

Visual question answering (VQA) in medical imaging aims to support clinical diagnosis by automatically interpreting complex imaging data in response to natural language queries. Existing studies typically rely on distinct visual and textual encoders to independently extract features from medical images and clinical questions, which are subsequently combined to generate answers. Specifically, in computed tomography (CT), such approaches are similar to the conventional practices in medical image analysis. However, these approaches pay less attention to the spatial continuity and inter-slice correlations in the volumetric CT data, leading to fragmented and imprecise responses. In this paper, we propose a novel large language model (LLM)-based framework enhanced by a graph representation of salient features. Different from conventional multimodal encoding strategies, our approach constructs a cross-modal graph integrating both visual and textual features, treating individual CT slices and question tokens as nodes within the graph. We further leverage an attentive graph convolutional network to dynamically fuse information within this structure. The resulting aggregated graph features then serve as a soft prompt to guide a large language model in generating accurate answers. Extensive experiments on the M3D-VQA benchmark demonstrate that our approach consistently outperforms baselines across multiple evaluation metrics, offering more robust reasoning capabilities.

CVJun 24, 2025
Recurrent Visual Feature Extraction and Stereo Attentions for CT Report Generation

Yuanhe Tian, Lei Mao, Yan Song

Generating reports for computed tomography (CT) images is a challenging task, while similar to existing studies for medical image report generation, yet has its unique characteristics, such as spatial encoding of multiple images, alignment between image volume and texts, etc. Existing solutions typically use general 2D or 3D image processing techniques to extract features from a CT volume, where they firstly compress the volume and then divide the compressed CT slices into patches for visual encoding. These approaches do not explicitly account for the transformations among CT slices, nor do they effectively integrate multi-level image features, particularly those containing specific organ lesions, to instruct CT report generation (CTRG). In considering the strong correlation among consecutive slices in CT scans, in this paper, we propose a large language model (LLM) based CTRG method with recurrent visual feature extraction and stereo attentions for hierarchical feature modeling. Specifically, we use a vision Transformer to recurrently process each slice in a CT volume, and employ a set of attentions over the encoded slices from different perspectives to selectively obtain important visual information and align them with textual features, so as to better instruct an LLM for CTRG. Experiment results and further analysis on the benchmark M3D-Cap dataset show that our method outperforms strong baseline models and achieves state-of-the-art results, demonstrating its validity and effectiveness.

CLOct 26, 2025
Frustratingly Easy Task-aware Pruning for Large Language Models

Yuanhe Tian, Junjie Liu, Xican Yang et al.

Pruning provides a practical solution to reduce the resources required to run large language models (LLMs) to benefit from their effective capabilities as well as control their cost for training and inference. Research on LLM pruning often ranks the importance of LLM parameters using their magnitudes and calibration-data activations and removes (or masks) the less important ones, accordingly reducing LLMs' size. However, these approaches primarily focus on preserving the LLM's ability to generate fluent sentences, while neglecting performance on specific domains and tasks. In this paper, we propose a simple yet effective pruning approach for LLMs that preserves task-specific capabilities while shrinking their parameter space. We first analyze how conventional pruning minimizes loss perturbation under general-domain calibration and extend this formulation by incorporating task-specific feature distributions into the importance computation of existing pruning algorithms. Thus, our framework computes separate importance scores using both general and task-specific calibration data, partitions parameters into shared and exclusive groups based on activation-norm differences, and then fuses their scores to guide the pruning process. This design enables our method to integrate seamlessly with various foundation pruning techniques and preserve the LLM's specialized abilities under compression. Experiments on widely used benchmarks demonstrate that our approach is effective and consistently outperforms the baselines with identical pruning ratios and different settings.

CLJul 21, 2025
ChiMed 2.0: Advancing Chinese Medical Dataset in Facilitating Large Language Modeling

Yuanhe Tian, Junjie Liu, Zhizhou Kou et al.

Building high-quality data resources is crucial for advancing artificial intelligence research and applications in specific domains, particularly in the Chinese medical domain. Existing Chinese medical datasets are limited in size and narrow in domain coverage, falling short of the diverse corpora required for effective pre-training. Moreover, most datasets are designed solely for LLM fine-tuning and do not support pre-training and reinforcement learning from human feedback (RLHF). In this paper, we propose a Chinese medical dataset named ChiMed 2.0, which extends our previous work ChiMed, and covers data collected from Chinese medical online platforms and generated by LLMs. ChiMed 2.0 contains 204.4M Chinese characters covering both traditional Chinese medicine classics and modern general medical data, where there are 164.8K documents for pre-training, 351.6K question-answering pairs for supervised fine-tuning (SFT), and 41.7K preference data tuples for RLHF. To validate the effectiveness of our approach for training a Chinese medical LLM, we conduct further pre-training, SFT, and RLHF experiments on representative general domain LLMs and evaluate their performance on medical benchmark datasets. The results show performance gains across different model scales, validating the dataset's effectiveness and applicability.

CLJul 20, 2025
Evaluation of Coding Schemes for Transformer-based Gene Sequence Modeling

Chenlei Gong, Yuanhe Tian, Lei Mao et al.

Currently, many studies view DNA sequences as a special type of language and utilize Transformers to model them. These studies use fixed-length k-mer segmentation and BPE subword tokenization but lack a systematic evaluation to determine which is superior. We compare k-mer segmentation with k=1,3,4,5,6, a 4,096-token BPE vocabulary, and three positional encoding methods-sinusoidal, AliBi, and RoPE. Each configuration is trained from scratch in 3, 6, 12, and 24-layer Transformer encoders and evaluated on GUE benchmark dataset. In general, BPE delivers higher and more stable performance across tasks by compressing frequent motifs into variable-length tokens, reducing sequence length, and improving model generalization. RoPE excels at capturing periodic motifs and extrapolating to long sequences, while AliBi also performs well on tasks driven by local dependencies. In terms of depth, we observe significant gains when increasing layers from 3 to 12, with only marginal improvements or slight overfitting at 24 layers. This study provides practical guidance for designing tokenization and positional encoding in DNA Transformer models.

CLJun 2, 2025
Detoxification of Large Language Models through Output-layer Fusion with a Calibration Model

Yuanhe Tian, Mingjie Deng, Guoqing Jin et al.

Existing approaches for Large language model (LLM) detoxification generally rely on training on large-scale non-toxic or human-annotated preference data, designing prompts to instruct the LLM to generate safe content, or modifying the model parameters to remove toxic information, which are computationally expensive, lack robustness, and often compromise LLMs' fluency and contextual understanding. In this paper, we propose a simple yet effective approach for LLM detoxification, which leverages a compact, pre-trained calibration model that guides the detoxification process of a target LLM via a lightweight intervention in its generation pipeline. By learning a detoxified embedding space from non-toxic data, the calibration model effectively steers the LLM away from generating harmful content. This approach only requires a one-time training of the calibration model that is able to be seamlessly applied to multiple LLMs without compromising fluency or contextual understanding. Experiment results on the benchmark dataset demonstrate that our approach reduces toxicity while maintaining reasonable content expression.

CLOct 29, 2020
Improving Named Entity Recognition with Attentive Ensemble of Syntactic Information

Yuyang Nie, Yuanhe Tian, Yan Song et al.

Named entity recognition (NER) is highly sensitive to sentential syntactic and semantic properties where entities may be extracted according to how they are used and placed in the running text. To model such properties, one could rely on existing resources to providing helpful knowledge to the NER task; some existing studies proved the effectiveness of doing so, and yet are limited in appropriately leveraging the knowledge such as distinguishing the important ones for particular context. In this paper, we improve NER by leveraging different types of syntactic information through attentive ensemble, which functionalizes by the proposed key-value memory networks, syntax attention, and the gate mechanism for encoding, weighting and aggregating such syntactic information, respectively. Experimental results on six English and Chinese benchmark datasets suggest the effectiveness of the proposed model and show that it outperforms previous studies on all experiment datasets.

CLOct 29, 2020
Named Entity Recognition for Social Media Texts with Semantic Augmentation

Yuyang Nie, Yuanhe Tian, Xiang Wan et al.

Existing approaches for named entity recognition suffer from data sparsity problems when conducted on short and informal texts, especially user-generated social media content. Semantic augmentation is a potential way to alleviate this problem. Given that rich semantic information is implicitly preserved in pre-trained word embeddings, they are potential ideal resources for semantic augmentation. In this paper, we propose a neural-based approach to NER for social media texts where both local (from running text) and augmented semantics are taken into account. In particular, we obtain the augmented semantic information from a large-scale corpus, and propose an attentive semantic augmentation module and a gate module to encode and aggregate such information, respectively. Extensive experiments are performed on three benchmark datasets collected from English and Chinese social media platforms, where the results demonstrate the superiority of our approach to previous studies across all three datasets.

CLOct 15, 2020
Improving Constituency Parsing with Span Attention

Yuanhe Tian, Yan Song, Fei Xia et al.

Constituency parsing is a fundamental and important task for natural language understanding, where a good representation of contextual information can help this task. N-grams, which is a conventional type of feature for contextual information, have been demonstrated to be useful in many tasks, and thus could also be beneficial for constituency parsing if they are appropriately modeled. In this paper, we propose span attention for neural chart-based constituency parsing to leverage n-gram information. Considering that current chart-based parsers with Transformer-based encoder represent spans by subtraction of the hidden states at the span boundaries, which may cause information loss especially for long spans, we incorporate n-grams into span representations by weighting them according to their contributions to the parsing process. Moreover, we propose categorical span attention to further enhance the model by weighting n-grams within different length categories, and thus benefit long-sentence parsing. Experimental results on three widely used benchmark datasets demonstrate the effectiveness of our approach in parsing Arabic, Chinese, and English, where state-of-the-art performance is obtained by our approach on all of them.

CLOct 13, 2020
Supertagging Combinatory Categorial Grammar with Attentive Graph Convolutional Networks

Yuanhe Tian, Yan Song, Fei Xia

Supertagging is conventionally regarded as an important task for combinatory categorial grammar (CCG) parsing, where effective modeling of contextual information is highly important to this task. However, existing studies have made limited efforts to leverage contextual features except for applying powerful encoders (e.g., bi-LSTM). In this paper, we propose attentive graph convolutional networks to enhance neural CCG supertagging through a novel solution of leveraging contextual information. Specifically, we build the graph from chunks (n-grams) extracted from a lexicon and apply attention over the graph, so that different word pairs from the contexts within and across chunks are weighted in the model and facilitate the supertagging accordingly. The experiments performed on the CCGbank demonstrate that our approach outperforms all previous studies in terms of both supertagging and parsing. Further analyses illustrate the effectiveness of each component in our approach to discriminatively learn from word pairs to enhance CCG supertagging.