Christian Schulz

Jonas Ammeling, Lars-Henning Schmidt, Jonathan Ganz et al.

Attention-based multiple instance learning (AMIL) algorithms have proven to be successful in utilizing gigapixel whole-slide images (WSIs) for a variety of different computational pathology tasks such as outcome prediction and cancer subtyping problems. We extended an AMIL approach to the task of survival prediction by utilizing the classical Cox partial likelihood as a loss function, converting the AMIL model into a nonlinear proportional hazards model. We applied the model to tissue microarray (TMA) slides of 330 lung cancer patients. The results show that AMIL approaches can handle very small amounts of tissue from a TMA and reach similar C-index performance compared to established survival prediction methods trained with highly discriminative clinical factors such as age, cancer grade, and cancer stage

Petr Samoldekin, Christian Schulz, Henning Woydt

Process mapping asks to assign vertices of a task graph to processing elements of a supercomputer such that the computational workload is balanced while the communication cost is minimized. Motivated by the recent success of GPU-based graph partitioners, we propose two GPU-accelerated algorithms for this optimization problem. The first algorithm employs hierarchical multisection, which partitions the task graph alongside the hierarchy of the supercomputer. The method utilizes GPU-based graph partitioners to accelerate the mapping process. The second algorithm integrates process mapping directly into the modern multilevel graph partitioning pipeline. Vital phases like coarsening and refinement are accelerated by exploiting the parallelism of GPUs. The first algorithm has, on average, about 12 percent higher communication costs than the state-of-the-art solver and thus remains competitive with it. However, in terms of speed, it vastly outperforms the competitor with a geometric mean speedup of 22 times and a maximum speedup of 934 times. The second approach is even faster, with a geometric mean speedup of 1454 times and a peak speedup of 12376 times. Compared to other algorithms that prioritize speed over solution quality, this approach has the same quality but much greater speedups. To our knowledge, these are the first GPU-based algorithms for process mapping.

Steve Ahlswede, Nimisha Thekke-Madam, Christian Schulz et al.

The collection of a high number of pixel-based labeled training samples for tree species identification is time consuming and costly in operational forestry applications. To address this problem, in this paper we investigate the effectiveness of explanation methods for deep neural networks in performing weakly supervised semantic segmentation using only image-level labels. Specifically, we consider four methods:i) class activation maps (CAM); ii) gradient-based CAM; iii) pixel correlation module; and iv) self-enhancing maps (SEM). We compare these methods with each other using both quantitative and qualitative measures of their segmentation accuracy, as well as their computational requirements. Experimental results obtained on an aerial image archive show that:i) considered explanation techniques are highly relevant for the identification of tree species with weak supervision; and ii) the SEM outperforms the other considered methods. The code for this paper is publicly available at https://git.tu-berlin.de/rsim/rs_wsss.