Seiji Takeda

Matteo Manica, Jannis Born, Joris Cadow et al. · mit

With the growing availability of data within various scientific domains, generative models hold enormous potential to accelerate scientific discovery. They harness powerful representations learned from datasets to speed up the formulation of novel hypotheses with the potential to impact material discovery broadly. We present the Generative Toolkit for Scientific Discovery (GT4SD). This extensible open-source library enables scientists, developers, and researchers to train and use state-of-the-art generative models to accelerate scientific discovery focused on material design.

Eduardo Soares, Akihiro Kishimoto, Emilio Vital Brazil et al.

Pre-trained Language Models have emerged as promising tools for predicting molecular properties, yet their development is in its early stages, necessitating further research to enhance their efficacy and address challenges such as generalization and sample efficiency. In this paper, we present a multi-view approach that combines latent spaces derived from state-of-the-art chemical models. Our approach relies on two pivotal elements: the embeddings derived from MHG-GNN, which represent molecular structures as graphs, and MoLFormer embeddings rooted in chemical language. The attention mechanism of MoLFormer is able to identify relations between two atoms even when their distance is far apart, while the GNN of MHG-GNN can more precisely capture relations among multiple atoms closely located. In this work, we demonstrate the superior performance of our proposed multi-view approach compared to existing state-of-the-art methods, including MoLFormer-XL, which was trained on 1.1 billion molecules, particularly in intricate tasks such as predicting clinical trial drug toxicity and inhibiting HIV replication. We assessed our approach using six benchmark datasets from MoleculeNet, where it outperformed competitors in five of them. Our study highlights the potential of latent space fusion and feature integration for advancing molecular property prediction. In this work, we use small versions of MHG-GNN and MoLFormer, which opens up an opportunity for further improvement when our approach uses a larger-scale dataset.

Akihiro Kishimoto, Hiroshi Kajino, Masataka Hirose et al.

Property prediction plays an important role in material discovery. As an initial step to eventually develop a foundation model for material science, we introduce a new autoencoder called the MHG-GNN, which combines graph neural network (GNN) with Molecular Hypergraph Grammar (MHG). Results on a variety of property prediction tasks with diverse materials show that MHG-GNN is promising.

Onur Boyar, Indra Priyadarsini, Seiji Takeda et al.

Discovering materials with desirable properties in an efficient way remains a significant problem in materials science. Many studies have tackled this problem by using different sets of information available about the materials. Among them, multimodal approaches have been found to be promising because of their ability to combine different sources of information. However, fusion algorithms to date remain simple, lacking a mechanism to provide a rich representation of multiple modalities. This paper presents LLM-Fusion, a novel multimodal fusion model that leverages large language models (LLMs) to integrate diverse representations, such as SMILES, SELFIES, text descriptions, and molecular fingerprints, for accurate property prediction. Our approach introduces a flexible LLM-based architecture that supports multimodal input processing and enables material property prediction with higher accuracy than traditional methods. We validate our model on two datasets across five prediction tasks and demonstrate its effectiveness compared to unimodal and naive concatenation baselines.

Indra Priyadarsini, Vidushi Sharma, Seiji Takeda et al.

Development of efficient and high-performing electrolytes is crucial for advancing energy storage technologies, particularly in batteries. Predicting the performance of battery electrolytes rely on complex interactions between the individual constituents. Consequently, a strategy that adeptly captures these relationships and forms a robust representation of the formulation is essential for integrating with machine learning models to predict properties accurately. In this paper, we introduce a novel approach leveraging a transformer-based molecular representation model to effectively and efficiently capture the representation of electrolyte formulations. The performance of the proposed approach is evaluated on two battery property prediction tasks and the results show superior performance compared to the state-of-the-art methods.