Guanchu Wang

Yu-Neng Chuang, Guanchu Wang, Chia-Yuan Chang et al.

The exponential growth in scholarly publications necessitates advanced tools for efficient article retrieval, especially in interdisciplinary fields where diverse terminologies are used to describe similar research. Traditional keyword-based search engines often fall short in assisting users who may not be familiar with specific terminologies. To address this, we present a knowledge graph-based paper search engine for biomedical research to enhance the user experience in discovering relevant queries and articles. The system, dubbed DiscoverPath, employs Named Entity Recognition (NER) and part-of-speech (POS) tagging to extract terminologies and relationships from article abstracts to create a KG. To reduce information overload, DiscoverPath presents users with a focused subgraph containing the queried entity and its neighboring nodes and incorporates a query recommendation system, enabling users to iteratively refine their queries. The system is equipped with an accessible Graphical User Interface that provides an intuitive visualization of the KG, query recommendations, and detailed article information, enabling efficient article retrieval, thus fostering interdisciplinary knowledge exploration. DiscoverPath is open-sourced at https://github.com/ynchuang/DiscoverPath.

Jiayi Yuan, Hongyi Liu, Shaochen Zhong et al.

Long context capability is a crucial competency for large language models (LLMs) as it mitigates the human struggle to digest long-form texts. This capability enables complex task-solving scenarios such as book summarization, code assistance, and many more tasks that are traditionally manpower-intensive. However, transformer-based LLMs face significant challenges with long context input due to the growing size of the KV cache and the intrinsic complexity of attending to extended inputs; where multiple schools of efficiency-driven approaches - such as KV cache quantization, token dropping, prompt compression, linear-time sequence models, and hybrid architectures - have been proposed to produce efficient yet long context-capable models. Despite these advancements, no existing work has comprehensively benchmarked these methods in a reasonably aligned environment. In this work, we fill this gap by providing a taxonomy of current methods and evaluating 10+ state-of-the-art approaches across seven categories of long context tasks. Our work reveals numerous previously unknown phenomena and offers insights - as well as a friendly workbench - for the future development of long context-capable LLMs. The source code is available at https://github.com/henryzhongsc/longctx_bench.

Guanchu Wang, Junhao Ran, Ruixiang Tang et al.

Despite the impressive capabilities of Large Language Models (LLMs) in general medical domains, questions remain about their performance in diagnosing rare diseases. To answer this question, we aim to assess the diagnostic performance of LLMs in rare diseases, and explore methods to enhance their effectiveness in this area. In this work, we introduce a rare disease question-answering (ReDis-QA) dataset to evaluate the performance of LLMs in diagnosing rare diseases. Specifically, we collected 1360 high-quality question-answer pairs within the ReDis-QA dataset, covering 205 rare diseases. Additionally, we annotated meta-data for each question, facilitating the extraction of subsets specific to any given disease and its property. Based on the ReDis-QA dataset, we benchmarked several open-source LLMs, revealing that diagnosing rare diseases remains a significant challenge for these models. To facilitate retrieval augmentation generation for rare disease diagnosis, we collect the first rare diseases corpus (ReCOP), sourced from the National Organization for Rare Disorders (NORD) database. Specifically, we split the report of each rare disease into multiple chunks, each representing a different property of the disease, including their overview, symptoms, causes, effects, related disorders, diagnosis, and standard therapies. This structure ensures that the information within each chunk aligns consistently with a question. Experiment results demonstrate that ReCOP can effectively improve the accuracy of LLMs on the ReDis-QA dataset by an average of 8%. Moreover, it significantly guides LLMs to generate trustworthy answers and explanations that can be traced back to existing literature.

Yu-Neng Chuang, Guanchu Wang, Fan Yang et al.

Recent advancements in explainable machine learning provide effective and faithful solutions for interpreting model behaviors. However, many explanation methods encounter efficiency issues, which largely limit their deployments in practical scenarios. Real-time explainer (RTX) frameworks have thus been proposed to accelerate the model explanation process by learning a one-feed-forward explainer. Existing RTX frameworks typically build the explainer under the supervised learning paradigm, which requires large amounts of explanation labels as the ground truth. Considering that accurate explanation labels are usually hard to obtain due to constrained computational resources and limited human efforts, effective explainer training is still challenging in practice. In this work, we propose a COntrastive Real-Time eXplanation (CoRTX) framework to learn the explanation-oriented representation and relieve the intensive dependence of explainer training on explanation labels. Specifically, we design a synthetic strategy to select positive and negative instances for the learning of explanation. Theoretical analysis show that our selection strategy can benefit the contrastive learning process on explanation tasks. Experimental results on three real-world datasets further demonstrate the efficiency and efficacy of our proposed CoRTX framework.

Guanchu Wang, Yu-Neng Chuang, Mengnan Du et al.

Even though Shapley value provides an effective explanation for a DNN model prediction, the computation relies on the enumeration of all possible input feature coalitions, which leads to the exponentially growing complexity. To address this problem, we propose a novel method SHEAR to significantly accelerate the Shapley explanation for DNN models, where only a few coalitions of input features are involved in the computation. The selection of the feature coalitions follows our proposed Shapley chain rule to minimize the absolute error from the ground-truth Shapley values, such that the computation can be both efficient and accurate. To demonstrate the effectiveness, we comprehensively evaluate SHEAR across multiple metrics including the absolute error from the ground-truth Shapley value, the faithfulness of the explanations, and running speed. The experimental results indicate SHEAR consistently outperforms state-of-the-art baseline methods across different evaluation metrics, which demonstrates its potentials in real-world applications where the computational resource is limited.

Chia-Yuan Chang, Yu-Neng Chuang, Guanchu Wang et al.

Domain generalization aims to learn a generalization model that can perform well on unseen test domains by only training on limited source domains. However, existing domain generalization approaches often bring in prediction-irrelevant noise or require the collection of domain labels. To address these challenges, we consider the domain generalization problem from a different perspective by categorizing underlying feature groups into domain-shared and domain-specific features. Nevertheless, the domain-specific features are difficult to be identified and distinguished from the input data. In this work, we propose DomaIn-SPEcific Liberating (DISPEL), a post-processing fine-grained masking approach that can filter out undefined and indistinguishable domain-specific features in the embedding space. Specifically, DISPEL utilizes a mask generator that produces a unique mask for each input data to filter domain-specific features. The DISPEL framework is highly flexible to be applied to any fine-tuned models. We derive a generalization error bound to guarantee the generalization performance by optimizing a designed objective loss. The experimental results on five benchmarks demonstrate DISPEL outperforms existing methods and can further generalize various algorithms.

Yu-Neng Chuang, Leisheng Yu, Guanchu Wang et al.

Large language models (LLMs) are increasingly deployed and democratized on edge devices. To improve the efficiency of on-device deployment, small language models (SLMs) are often adopted due to their efficient decoding latency and reduced energy consumption. However, these SLMs often generate inaccurate responses when handling complex queries. One promising solution is uncertainty-based SLM routing, offloading high-stakes queries to stronger LLMs when resulting in low-confidence responses on SLM. This follows the principle of "If you lack confidence, seek stronger support" to enhance reliability. Relying on more powerful LLMs is yet effective but increases invocation costs. Therefore, striking a routing balance between efficiency and efficacy remains a critical challenge. Additionally, efficiently generalizing the routing strategy to new datasets remains under-explored. In this paper, we conduct a comprehensive investigation into benchmarking and generalization of uncertainty-driven routing strategies from SLMs to LLMs over 1500+ settings. Our findings highlight: First, uncertainty-correctness alignment in different uncertainty quantification (UQ) methods significantly impacts routing performance. Second, uncertainty distributions depend more on both the specific SLM and the chosen UQ method, rather than downstream data. Building on the insight, we propose a calibration data construction instruction pipeline and open-source a constructed hold-out set to enhance routing generalization on new downstream scenarios. The experimental results indicate calibration data effectively bootstraps routing performance without any new data.

Yu-Neng Chuang, Guanchu Wang, Chia-Yuan Chang et al.

Large language models (LLMs) increasingly produce natural language explanations, yet these explanations often lack faithfulness, and they do not reliably reflect the evidence the model uses to decide. We introduce FaithLM, a model-agnostic framework that evaluates and improves the faithfulness of LLM explanations without token masking or task-specific heuristics. FaithLM formalizes explanation faithfulness as an intervention property: a faithful explanation should yield a prediction shift when its content is contradicted. Theoretical analysis shows that the resulting contrary-hint score is a sound and discriminative estimator of faithfulness. Building on this principle, FaithLM iteratively refines both the elicitation prompt and the explanation to maximize the measured score. Experiments on three multi-domain datasets and multiple LLM backbones demonstrate that FaithLM consistently increases faithfulness and produces explanations more aligned with human rationales than strong self-explanation baselines. These findings highlight that intervention-based evaluation, coupled with iterative optimization, provides a principled route toward faithful and reliable LLM explanations.

Boning Zhang, Dongzhu Liu, Osvaldo Simeone et al.

To support real-world decision-making, it is crucial for models to be well-calibrated, i.e., to assign reliable confidence estimates to their predictions. Uncertainty quantification is particularly important in personalized federated learning (PFL), as participating clients typically have small local datasets, making it difficult to unambiguously determine optimal model parameters. Bayesian PFL (BPFL) methods can potentially enhance calibration, but they often come with considerable computational and memory requirements due to the need to track the variances of all the individual model parameters. Furthermore, different clients may exhibit heterogeneous uncertainty levels owing to varying local dataset sizes and distributions. To address these challenges, we propose LR-BPFL, a novel BPFL method that learns a global deterministic model along with personalized low-rank Bayesian corrections. To tailor the local model to each client's inherent uncertainty level, LR-BPFL incorporates an adaptive rank selection mechanism. We evaluate LR-BPFL across a variety of datasets, demonstrating its advantages in terms of calibration, accuracy, as well as computational and memory requirements.

Yu-Neng Chuang, Songchen Li, Jiayi Yuan et al.

Time Series Forecasting (TSF) has long been a challenge in time series analysis. Inspired by the success of Large Language Models (LLMs), researchers are now developing Large Time Series Models (LTSMs)-universal transformer-based models that use autoregressive prediction-to improve TSF. However, training LTSMs on heterogeneous time series data poses unique challenges, including diverse frequencies, dimensions, and patterns across datasets. Recent endeavors have studied and evaluated various design choices aimed at enhancing LTSM training and generalization capabilities. However, these design choices are typically studied and evaluated in isolation and are not benchmarked collectively. In this work, we introduce LTSM-Bundle, a comprehensive toolbox, and benchmark for training LTSMs, spanning pre-processing techniques, model configurations, and dataset configuration. It modularized and benchmarked LTSMs from multiple dimensions, encompassing prompting strategies, tokenization approaches, training paradigms, base model selection, data quantity, and dataset diversity. Furthermore, we combine the most effective design choices identified in our study. Empirical results demonstrate that this combination achieves superior zero-shot and few-shot performances compared to state-of-the-art LTSMs and traditional TSF methods on benchmark datasets.

Guanchu Wang, Yu-Neng Chuang, Fan Yang et al.

Explainable machine learning significantly improves the transparency of deep neural networks. However, existing work is constrained to explaining the behavior of individual model predictions, and lacks the ability to transfer the explanation across various models and tasks. This limitation results in explaining various tasks being time- and resource-consuming. To address this problem, we introduce a Transferable Vision Explainer (TVE) that can effectively explain various vision models in downstream tasks. Specifically, the transferability of TVE is realized through a pre-training process on large-scale datasets towards learning the meta-attribution. This meta-attribution leverages the versatility of generic backbone encoders to comprehensively encode the attribution knowledge for the input instance, which enables TVE to seamlessly transfer to explain various downstream tasks, without the need for training on task-specific data. Empirical studies involve explaining three different architectures of vision models across three diverse downstream datasets. The experimental results indicate TVE is effective in explaining these tasks without the need for additional training on downstream data.