Shenda Hong

Ling Yang, Ye Tian, Minkai Xu et al.

GNN-to-MLP distillation aims to utilize knowledge distillation (KD) to learn computationally-efficient multi-layer perceptron (student MLP) on graph data by mimicking the output representations of teacher GNN. Existing methods mainly make the MLP to mimic the GNN predictions over a few class labels. However, the class space may not be expressive enough for covering numerous diverse local graph structures, thus limiting the performance of knowledge transfer from GNN to MLP. To address this issue, we propose to learn a new powerful graph representation space by directly labeling nodes' diverse local structures for GNN-to-MLP distillation. Specifically, we propose a variant of VQ-VAE to learn a structure-aware tokenizer on graph data that can encode each node's local substructure as a discrete code. The discrete codes constitute a codebook as a new graph representation space that is able to identify different local graph structures of nodes with the corresponding code indices. Then, based on the learned codebook, we propose a new distillation target, namely soft code assignments, to directly transfer the structural knowledge of each node from GNN to MLP. The resulting framework VQGraph achieves new state-of-the-art performance on GNN-to-MLP distillation in both transductive and inductive settings across seven graph datasets. We show that VQGraph with better performance infers faster than GNNs by 828x, and also achieves accuracy improvement over GNNs and stand-alone MLPs by 3.90% and 28.05% on average, respectively. Code: https://github.com/YangLing0818/VQGraph.

Ling Yang, Zhilin Huang, Yang Song et al.

Generating images from graph-structured inputs, such as scene graphs, is uniquely challenging due to the difficulty of aligning nodes and connections in graphs with objects and their relations in images. Most existing methods address this challenge by using scene layouts, which are image-like representations of scene graphs designed to capture the coarse structures of scene images. Because scene layouts are manually crafted, the alignment with images may not be fully optimized, causing suboptimal compliance between the generated images and the original scene graphs. To tackle this issue, we propose to learn scene graph embeddings by directly optimizing their alignment with images. Specifically, we pre-train an encoder to extract both global and local information from scene graphs that are predictive of the corresponding images, relying on two loss functions: masked autoencoding loss and contrastive loss. The former trains embeddings by reconstructing randomly masked image regions, while the latter trains embeddings to discriminate between compliant and non-compliant images according to the scene graph. Given these embeddings, we build a latent diffusion model to generate images from scene graphs. The resulting method, called SGDiff, allows for the semantic manipulation of generated images by modifying scene graph nodes and connections. On the Visual Genome and COCO-Stuff datasets, we demonstrate that SGDiff outperforms state-of-the-art methods, as measured by both the Inception Score and Fréchet Inception Distance (FID) metrics. We will release our source code and trained models at https://github.com/YangLing0818/SGDiff.

Jun Li, Che Liu, Sibo Cheng et al.

The electrocardiogram (ECG) is one of the most commonly used non-invasive, convenient medical monitoring tools that assist in the clinical diagnosis of heart diseases. Recently, deep learning (DL) techniques, particularly self-supervised learning (SSL), have demonstrated great potential in the classification of ECG. SSL pre-training has achieved competitive performance with only a small amount of annotated data after fine-tuning. However, current SSL methods rely on the availability of annotated data and are unable to predict labels not existing in fine-tuning datasets. To address this challenge, we propose Multimodal ECG-Text Self-supervised pre-training (METS), the first work to utilize the auto-generated clinical reports to guide ECG SSL pre-training. We use a trainable ECG encoder and a frozen language model to embed paired ECG and automatically machine-generated clinical reports separately. The SSL aims to maximize the similarity between paired ECG and auto-generated report while minimize the similarity between ECG and other reports. In downstream classification tasks, METS achieves around 10% improvement in performance without using any annotated data via zero-shot classification, compared to other supervised and SSL baselines that rely on annotated data. Furthermore, METS achieves the highest recall and F1 scores on the MIT-BIH dataset, despite MIT-BIH containing different classes of ECG compared to the pre-trained dataset. The extensive experiments have demonstrated the advantages of using ECG-Text multimodal self-supervised learning in terms of generalizability, effectiveness, and efficiency.

Ling Yang, Jiayi Zheng, Heyuan Wang et al.

Out-of-distribution (OOD) graph generalization are critical for many real-world applications. Existing methods neglect to discard spurious or noisy features of inputs, which are irrelevant to the label. Besides, they mainly conduct instance-level class-invariant graph learning and fail to utilize the structural class relationships between graph instances. In this work, we endeavor to address these issues in a unified framework, dubbed Individual and Structural Graph Information Bottlenecks (IS-GIB). To remove class spurious feature caused by distribution shifts, we propose Individual Graph Information Bottleneck (I-GIB) which discards irrelevant information by minimizing the mutual information between the input graph and its embeddings. To leverage the structural intra- and inter-domain correlations, we propose Structural Graph Information Bottleneck (S-GIB). Specifically for a batch of graphs with multiple domains, S-GIB first computes the pair-wise input-input, embedding-embedding, and label-label correlations. Then it minimizes the mutual information between input graph and embedding pairs while maximizing the mutual information between embedding and label pairs. The critical insight of S-GIB is to simultaneously discard spurious features and learn invariant features from a high-order perspective by maintaining class relationships under multiple distributional shifts. Notably, we unify the proposed I-GIB and S-GIB to form our complementary framework IS-GIB. Extensive experiments conducted on both node- and graph-level tasks consistently demonstrate the superior generalization ability of IS-GIB. The code is available at https://github.com/YangLing0818/GraphOOD.

Chenxi Sun, Hongyan Li, Yaliang Li et al.

This work summarizes two ways to accomplish Time-Series (TS) tasks in today's Large Language Model (LLM) context: LLM-for-TS (model-centric) designs and trains a fundamental large model, or fine-tunes a pre-trained LLM for TS data; TS-for-LLM (data-centric) converts TS into a model-friendly representation to enable the pre-trained LLM to handle TS data. Given the lack of data, limited resources, semantic context requirements, and so on, this work focuses on TS-for-LLM, where we aim to activate LLM's ability for TS data by designing a TS embedding method suitable for LLM. The proposed method is named TEST. It first tokenizes TS, builds an encoder to embed TS via instance-wise, feature-wise, and text-prototype-aligned contrast, where the TS embedding space is aligned to LLM embedding layer space, then creates soft prompts to make LLM more open to that embeddings, and finally implements TS tasks using the frozen LLM. We also demonstrate the feasibility of TS-for-LLM through theory and experiments. Experiments are carried out on TS classification, forecasting, and representation tasks using eight frozen LLMs with various structures and sizes. The results show that the pre-trained LLM with TEST strategy can achieve better or comparable performance than today's SOTA TS models and offer benefits for few-shot and generalization. By treating LLM as the pattern machine, TEST can endow LLM's ability to process TS data without compromising language ability. We hope that this study will serve as a foundation for future work to support TS+LLM progress.

Yujie Xiao, Qinghao Zhao, Gongzheng Tang et al.

CAD remains a major global public health burden, yet scalable screening tools are limited. Although CCTA is a first-line non-invasive diagnostic modality, its use is constrained by resource requirements and radiation exposure. AI-ECG may offer a complementary approach for CAD risk stratification. In this multicenter study, we developed and validated an AI-ECG model using CCTA as the anatomical reference standard to predict vessel-specific coronary stenosis. In internal validation, the model achieved AUC values of 0.683-0.744 across vessels and showed consistent external performance. Discrimination was maintained in clinically normal ECGs and remained broadly stable across subgroups. Model-predicted probabilities increased monotonically with CCTA-defined stenosis severity. Model probabilities were converted into vessel-specific low-, intermediate-, and high-risk strata using predefined sensitivity- and specificity-based thresholds. Calibration analysis showed agreement between predicted and observed risk, while DCA indicated net clinical benefit over treat-all and treat-none strategies. Integrating AI-derived risk strata with guideline-based PTP categories improved rule-out performance, reduced the gray-zone proportion, and achieved positive NRI compared with PTP alone. In a longitudinal follow-up cohort, Kaplan-Meier analysis showed clear separation of major adverse cardiovascular event risk across model-defined risk groups. Waveform- and attribution-based analyses further identified structured ECG morphology differences and physiologically meaningful signal regions associated with high-risk predictions. These findings support AI-ECG as a feasible tool for complementary CAD screening, anatomical risk estimation, and clinical triage, while prospective studies are needed to confirm its clinical impact.

Xiang Lan, Hanshu Yan, Shenda Hong et al.

Not all positive pairs are beneficial to time series contrastive learning. In this paper, we study two types of bad positive pairs that can impair the quality of time series representation learned through contrastive learning: the noisy positive pair and the faulty positive pair. We observe that, with the presence of noisy positive pairs, the model tends to simply learn the pattern of noise (Noisy Alignment). Meanwhile, when faulty positive pairs arise, the model wastes considerable amount of effort aligning non-representative patterns (Faulty Alignment). To address this problem, we propose a Dynamic Bad Pair Mining (DBPM) algorithm, which reliably identifies and suppresses bad positive pairs in time series contrastive learning. Specifically, DBPM utilizes a memory module to dynamically track the training behavior of each positive pair along training process. This allows us to identify potential bad positive pairs at each epoch based on their historical training behaviors. The identified bad pairs are subsequently down-weighted through a transformation module, thereby mitigating their negative impact on the representation learning process. DBPM is a simple algorithm designed as a lightweight plug-in without learnable parameters to enhance the performance of existing state-of-the-art methods. Through extensive experiments conducted on four large-scale, real-world time series datasets, we demonstrate DBPM's efficacy in mitigating the adverse effects of bad positive pairs.

Ling Yang, Shenda Hong

Unsupervised/self-supervised graph representation learning is critical for downstream node- and graph-level classification tasks. Global structure of graphs helps discriminating representations and existing methods mainly utilize the global structure by imposing additional supervisions. However, their global semantics are usually invariant for all nodes/graphs and they fail to explicitly embed the global semantics to enrich the representations. In this paper, we propose Omni-Granular Ego-Semantic Propagation for Self-Supervised Graph Representation Learning (OEPG). Specifically, we introduce instance-adaptive global-aware ego-semantic descriptors, leveraging the first- and second-order feature differences between each node/graph and hierarchical global clusters of the entire graph dataset. The descriptors can be explicitly integrated into local graph convolution as new neighbor nodes. Besides, we design an omni-granular normalization on the whole scales and hierarchies of the ego-semantic to assign attentional weight to each descriptor from an omni-granular perspective. Specialized pretext tasks and cross-iteration momentum update are further developed for local-global mutual adaptation. In downstream tasks, OEPG consistently achieves the best performance with a 2%~6% accuracy gain on multiple datasets cross scales and domains. Notably, OEPG also generalizes to quantity- and topology-imbalance scenarios.

Chenxi Sun, Hongyan Li, Moxian Song et al.

Continuous diagnosis and prognosis are essential for intensive care patients. It can provide more opportunities for timely treatment and rational resource allocation, especially for sepsis, a main cause of death in ICU, and COVID-19, a new worldwide epidemic. Although deep learning methods have shown their great superiority in many medical tasks, they tend to catastrophically forget, over fit, and get results too late when performing diagnosis and prognosis in the continuous mode. In this work, we summarized the three requirements of this task, proposed a new concept, continuous classification of time series (CCTS), and designed a novel model training method, restricted update strategy of neural networks (RU). In the context of continuous prognosis, our method outperformed all baselines and achieved the average accuracy of 90%, 97%, and 85% on sepsis prognosis, COVID-19 mortality prediction, and eight diseases classification. Superiorly, our method can also endow deep learning with interpretability, having the potential to explore disease mechanisms and provide a new horizon for medical research. We have achieved disease staging for sepsis and COVID-19, discovering four stages and three stages with their typical biomarkers respectively. Further, our method is a data-agnostic and model-agnostic plug-in, it can be used to continuously prognose other diseases with staging and even implement CCTS in other fields.

Wenrui Zhang, Ling Yang, Shijia Geng et al.

Unsupervised/self-supervised representation learning in time series is critical since labeled samples are usually scarce in real-world scenarios. Existing approaches mainly leverage the contrastive learning framework, which automatically learns to understand the similar and dissimilar data pairs. Nevertheless, they are restricted to the prior knowledge of constructing pairs, cumbersome sampling policy, and unstable performances when encountering sampling bias. Also, few works have focused on effectively modeling across temporal-spectral relations to extend the capacity of representations. In this paper, we aim at learning representations for time series from a new perspective and propose Cross Reconstruction Transformer (CRT) to solve the aforementioned problems in a unified way. CRT achieves time series representation learning through a cross-domain dropping-reconstruction task. Specifically, we transform time series into the frequency domain and randomly drop certain parts in both time and frequency domains. Dropping can maximally preserve the global context compared to cropping and masking. Then a transformer architecture is utilized to adequately capture the cross-domain correlations between temporal and spectral information through reconstructing data in both domains, which is called Dropped Temporal-Spectral Modeling. To discriminate the representations in global latent space, we propose Instance Discrimination Constraint to reduce the mutual information between different time series and sharpen the decision boundaries. Additionally, we propose a specified curriculum learning strategy to optimize the CRT, which progressively increases the dropping ratio in the training process.

Deyun Zhang, Shijia Geng, Yang Zhou et al.

The artificial intelligence (AI) system has achieved expert-level performance in electrocardiogram (ECG) signal analysis. However, in underdeveloped countries or regions where the healthcare information system is imperfect, only paper ECGs can be provided. Analysis of real-world ECG images (photos or scans of paper ECGs) remains challenging due to complex environments or interference. In this study, we present an AI system developed to detect and screen cardiac abnormalities (CAs) from real-world ECG images. The system was evaluated on a large dataset of 52,357 patients from multiple regions and populations across the world. On the detection task, the AI system obtained area under the receiver operating curve (AUC) of 0.996 (hold-out test), 0.994 (external test 1), 0.984 (external test 2), and 0.979 (external test 3), respectively. Meanwhile, the detection results of AI system showed a strong correlation with the diagnosis of cardiologists (cardiologist 1 (R=0.794, p<1e-3), cardiologist 2 (R=0.812, p<1e-3)). On the screening task, the AI system achieved AUCs of 0.894 (hold-out test) and 0.850 (external test). The screening performance of the AI system was better than that of the cardiologists (AI system (0.846) vs. cardiologist 1 (0.520) vs. cardiologist 2 (0.480)). Our study demonstrates the feasibility of an accurate, objective, easy-to-use, fast, and low-cost AI system for CA detection and screening. The system has the potential to be used by healthcare professionals, caregivers, and general users to assess CAs based on real-world ECG images.

Chenxi Sun, Moxian Song, Derun Can et al.

In the real world, the class of a time series is usually labeled at the final time, but many applications require to classify time series at every time point. e.g. the outcome of a critical patient is only determined at the end, but he should be diagnosed at all times for timely treatment. Thus, we propose a new concept: Continuous Classification of Time Series (CCTS). It requires the model to learn data in different time stages. But the time series evolves dynamically, leading to different data distributions. When a model learns multi-distribution, it always forgets or overfits. We suggest that meaningful learning scheduling is potential due to an interesting observation: Measured by confidence, the process of model learning multiple distributions is similar to the process of human learning multiple knowledge. Thus, we propose a novel Confidence-guided method for CCTS (C3TS). It can imitate the alternating human confidence described by the Dunning-Kruger Effect. We define the objective- confidence to arrange data, and the self-confidence to control the learning duration. Experiments on four real-world datasets show that C3TS is more accurate than all baselines for CCTS.

Jiahao Shao, Shijia Geng, Zhaoji Fu et al.

In clinics, doctors rely on electrocardiograms (ECGs) to assess severe cardiac disorders. Owing to the development of technology and the increase in health awareness, ECG signals are currently obtained by using medical and commercial devices. Deep neural networks (DNNs) can be used to analyze these signals because of their high accuracy rate. However, researchers have found that adversarial attacks can significantly reduce the accuracy of DNNs. Studies have been conducted to defend ECG-based DNNs against traditional adversarial attacks, such as projected gradient descent (PGD), and smooth adversarial perturbation (SAP) which targets ECG classification; however, to the best of our knowledge, no study has completely explored the defense against adversarial attacks targeting ECG classification. Thus, we did different experiments to explore the effects of defense methods against white-box adversarial attack and black-box adversarial attack targeting ECG classification, and we found that some common defense methods performed well against these attacks. Besides, we proposed a new defense method called Adversarial Distillation Training (ADT) which comes from defensive distillation and can effectively improve the generalization performance of DNNs. The results show that our method performed more effectively against adversarial attacks targeting on ECG classification than the other baseline methods, namely, adversarial training, defensive distillation, Jacob regularization, and noise-to-signal ratio regularization. Furthermore, we found that our method performed better against PGD attacks with low noise levels, which means that our method has stronger robustness.

Songchi Zhou, Ge Song, Haoqi Sun et al.

Traditional sleep staging categorizes sleep and wakefulness into five coarse-grained classes, overlooking subtle variations within each stage. It provides limited information about the duration of arousal and may hinder research on sleep fragmentation and relevant sleep disorders. To address this issue, we propose a deep learning method for automatic and scalable annotation of continuous sleep depth index (SDI) using existing discrete sleep staging labels. Our approach was validated using polysomnography from over 10,000 recordings across four large-scale cohorts. The results showcased a strong correlation between the decrease in sleep depth index and the increase in duration of arousal. Specific case studies indicated that the sleep depth index captured more nuanced sleep structures than conventional sleep staging. Gaussian mixture models based on the digital biomarkers extracted from the sleep depth index identified two subtypes of sleep, where participants in the disturbed sleep group had a higher prevalence of sleep apnea, insomnia, poor subjective sleep quality, hypertension, and cardiovascular disease. The disturbed subtype was associated with a 42% (hazard ratio 1.42, 95% CI 1.24-1.62) increased risk of mortality and a 29% (hazard ratio 1.29, 95% CI 1.00-1.67) increased risk of fatal cardiovascular disease. Our study underscores the utility of the proposed method for continuous sleep depth annotation, which could reveal more detailed information about the sleep structure and yield novel digital biomarkers for routine clinical use in sleep medicine.

Jiarong Chen, Wanqing Wu, Tong Liu et al.

Electrocardiogram (ECG) has emerged as a widely accepted diagnostic instrument for cardiovascular diseases (CVD). The standard clinical 12-lead ECG configuration causes considerable inconvenience and discomfort, while wearable devices offers a more practical alternative. To reduce information gap between 12-lead ECG and single-lead ECG, this study proposes a multi-channel masked autoencoder (MCMA) for reconstructing 12-Lead ECG from arbitrary single-lead ECG, and a comprehensive evaluation benchmark, ECGGenEval, encompass the signal-level, feature-level, and diagnostic-level evaluations. MCMA can achieve the state-of-the-art performance. In the signal-level evaluation, the mean square errors of 0.0317 and 0.1034, Pearson correlation coefficients of 0.7885 and 0.7420. In the feature-level evaluation, the average standard deviation of the mean heart rate across the generated 12-lead ECG is 1.0481, the coefficient of variation is 1.58%, and the range is 3.2874. In the diagnostic-level evaluation, the average F1-score with two generated 12-lead ECG from different single-lead ECG are 0.8233 and 0.8410.

Jiayi Zheng, Ling Yang, Heyuan Wang et al.

Graph embedding methods including traditional shallow models and deep Graph Neural Networks (GNNs) have led to promising applications in recommendation. Nevertheless, shallow models especially random-walk-based algorithms fail to adequately exploit neighbor proximity in sampled subgraphs or sequences due to their optimization paradigm. GNN-based algorithms suffer from the insufficient utilization of high-order information and easily cause over-smoothing problems when stacking too much layers, which may deteriorate the recommendations of low-degree (long-tail) items, limiting the expressiveness and scalability. In this paper, we propose a novel framework SAC, namely Spatial Autoregressive Coding, to solve the above problems in a unified way. To adequately leverage neighbor proximity and high-order information, we design a novel spatial autoregressive paradigm. Specifically, we first randomly mask multi-hop neighbors and embed the target node by integrating all other surrounding neighbors with an explicit multi-hop attention. Then we reinforce the model to learn a neighbor-predictive coding for the target node by contrasting the coding and the masked neighbors' embedding, equipped with a new hard negative sampling strategy. To learn the minimal sufficient representation for the target-to-neighbor prediction task and remove the redundancy of neighbors, we devise Neighbor Information Bottleneck by maximizing the mutual information between target predictive coding and the masked neighbors' embedding, and simultaneously constraining those between the coding and surrounding neighbors' embedding. Experimental results on both public recommendation datasets and a real scenario web-scale dataset Douyin-Friend-Recommendation demonstrate the superiority of SAC compared with state-of-the-art methods.

Jiarui Jin, Haoyu Wang, Hongyan Li et al.

Electrocardiogram (ECG) is essential for the clinical diagnosis of arrhythmias and other heart diseases, but deep learning methods based on ECG often face limitations due to the need for high-quality annotations. Although previous ECG self-supervised learning (eSSL) methods have made significant progress in representation learning from unannotated ECG data, they typically treat ECG signals as ordinary time-series data, segmenting the signals using fixed-size and fixed-step time windows, which often ignore the form and rhythm characteristics and latent semantic relationships in ECG signals. In this work, we introduce a novel perspective on ECG signals, treating heartbeats as words and rhythms as sentences. Based on this perspective, we first designed the QRS-Tokenizer, which generates semantically meaningful ECG sentences from the raw ECG signals. Building on these, we then propose HeartLang, a novel self-supervised learning framework for ECG language processing, learning general representations at form and rhythm levels. Additionally, we construct the largest heartbeat-based ECG vocabulary to date, which will further advance the development of ECG language processing. We evaluated HeartLang across six public ECG datasets, where it demonstrated robust competitiveness against other eSSL methods. Our data and code are publicly available at https://github.com/PKUDigitalHealth/HeartLang.

Jiarui Jin, Haoyu Wang, Xiang Lan et al.

Recent unified models such as GPT-5 have achieved encouraging progress on vision-language tasks. However, these unified models typically fail to correctly understand ECG signals and provide accurate medical diagnoses, nor can they correctly generate ECG signals. To address these limitations, we propose UniECG, the first unified model for ECG capable of concurrently performing evidence-based ECG interpretation and text-conditioned ECG generation tasks. Through a decoupled two-stage training approach, the model first learns evidence-based interpretation skills (ECG-to-Text), and then injects ECG generation capabilities (Text-to-ECG) via latent space alignment. UniECG can autonomously choose to interpret or generate an ECG based on user input, significantly extending the capability boundaries of current ECG models. Our code and checkpoints will be made publicly available at https://github.com/PKUDigitalHealth/UniECG upon acceptance.

Yongchao Long, Chao Yang, Gongzheng Tang et al.

Privacy-preserving medical decision support for kidney disease requires localized deployment of large language models (LLMs) while maintaining clinical reasoning capabilities. Current solutions face three challenges: 1) Cloud-based LLMs pose data security risks; 2) Local model deployment demands technical expertise; 3) General LLMs lack mechanisms to integrate medical knowledge. Retrieval-augmented systems also struggle with medical document processing and clinical usability. We developed KidneyTalk-open, a desktop system integrating three technical components: 1) No-code deployment of state-of-the-art (SOTA) open-source LLMs (such as DeepSeek-r1, Qwen2.5) via local inference engine; 2) Medical document processing pipeline combining context-aware chunking and intelligent filtering; 3) Adaptive Retrieval and Augmentation Pipeline (AddRep) employing agents collaboration for improving the recall rate of medical documents. A graphical interface was designed to enable clinicians to manage medical documents and conduct AI-powered consultations without technical expertise. Experimental validation on 1,455 challenging nephrology exam questions demonstrates AddRep's effectiveness: achieving 29.1% accuracy (+8.1% over baseline) with intelligent knowledge integration, while maintaining robustness through 4.9% rejection rate to suppress hallucinations. Comparative case studies with the mainstream products (AnythingLLM, Chatbox, GPT4ALL) demonstrate KidneyTalk-open's superior performance in real clinical query. KidneyTalk-open represents the first no-code medical LLM system enabling secure documentation-enhanced medical Q&A on desktop. Its designs establishes a new framework for privacy-sensitive clinical AI applications. The system significantly lowers technical barriers while improving evidence traceability, enabling more medical staff or patients to use SOTA open-source LLMs conveniently.

Sumei Fan, Deyun Zhang, Yue Wang et al.

Accurate, continuous out-of-hospital electrocardiogram (ECG) parameter measurement is vital for real-time cardiac health monitoring and telemedicine. On-device computation of single-lead ECG parameters enables timely assessment without reliance on centralized data processing, advancing personalized, ubiquitous cardiac care-yet comprehensive validation across heterogeneous real-world populations remains limited. This study validated the on-device algorithm FeatureDB (https://github.com/PKUDigitalHealth/FeatureDB) using two datasets: HeartVoice-ECG-lite (369 participants with single-lead ECGs annotated by two physicians) and PTB-XL/PTB-XL+ (21,354 patients with 12-lead ECGs and physicians' diagnostic annotations). FeatureDB computed PR, QT, and QTc intervals, with accuracy evaluated against physician annotations via mean absolute error (MAE), correlation analysis, and Bland-Altman analysis. Diagnostic performance for first-degree atrioventricular block (AVBI, PR-based) and long QT syndrome (LQT, QTc-based) was benchmarked against commercial 12-lead systems (12SL, Uni-G) and open-source algorithm Deli, using AUC, accuracy, sensitivity, and specificity. Results showed high concordance with expert annotations (Pearson correlations: 0.836-0.960), MAEs matching inter-observer variability, and minimal bias. AVBI AUC reached 0.787 (12SL: 0.859; Uni-G: 0.812; Deli: 0.501); LQT AUC was 0.684 (12SL: 0.716; Uni-G: 0.605; Deli: 0.569)-comparable to commercial tools and superior to open-source alternatives. FeatureDB delivers physician-level parameter accuracy and commercial-grade abnormality detection via single-lead devices, supporting scalable telemedicine, decentralized cardiac screening, and continuous monitoring in community and outpatient settings.

Yongchao Long, Xian Wu, Yingying Zhang et al.

While Retrieval-Augmented Generation (RAG) enables large language models (LLMs) to generate contextually grounded responses, contextual faithfulness remains challenging as LLMs may not consistently trust provided context, leading to hallucinations that undermine reliability. We observe an inverse correlation between response copying degree and context-unfaithful hallucinations on RAGTruth, suggesting that higher copying degrees reduce hallucinations by fostering genuine contextual belief. We propose CopyPasteLLM, obtained through two-stage high-copying response preference training. We design three prompting methods to enhance copying degree, demonstrating that high-copying responses achieve superior contextual faithfulness and hallucination control. These approaches enable a fully automated pipeline that transforms generated responses into high-copying preference data for training CopyPasteLLM. On FaithEval, ConFiQA and PubMedQA, CopyPasteLLM achieves best performance in both counterfactual and original contexts, remarkably with 12.2% to 24.5% accuracy improvements on FaithEval over the best baseline, while requiring only 365 training samples -- 1/50th of baseline data. To elucidate CopyPasteLLM's effectiveness, we propose the Context-Parameter Copying Capturing algorithm. Interestingly, this reveals that CopyPasteLLM recalibrates reliance on internal parametric knowledge rather than external knowledge during generation. All codes are available at https://github.com/longyongchao/CopyPasteLLM

Guangkun Nie, Qinghao Zhao, Gongzheng Tang et al.

Photoplethysmography (PPG) is emerging as a crucial tool for monitoring human hemodynamics, with recent studies highlighting its potential in assessing vascular aging through deep learning. However, real-world age distributions are often imbalanced, posing significant challenges for deep learning models. In this paper, we introduce a novel, simple, and effective loss function named the Dist Loss to address deep imbalanced regression tasks. We trained a one-dimensional convolutional neural network (Net1D) incorporating the Dist Loss on the extensive UK Biobank dataset (n=502,389) to estimate vascular age from PPG signals and validate its efficacy in characterizing cardiovascular health. The model's performance was validated on a 40% held-out test set, achieving state-of-the-art results, especially in regions with small sample sizes. Furthermore, we divided the population into three subgroups based on the difference between predicted vascular age and chronological age: less than -10 years, between -10 and 10 years, and greater than 10 years. We analyzed the relationship between predicted vascular age and several cardiovascular events over a follow-up period of up to 10 years, including death, coronary heart disease, and heart failure. Our results indicate that the predicted vascular age has significant potential to reflect an individual's cardiovascular health status. Our code will be available at https://github.com/Ngk03/AI-vascular-age.

Ling Yang, Jingwei Liu, Shenda Hong et al.

Diffusion models are a new class of generative models, and have dramatically promoted image generation with unprecedented quality and diversity. Existing diffusion models mainly try to reconstruct input image from a corrupted one with a pixel-wise or feature-wise constraint along spatial axes. However, such point-based reconstruction may fail to make each predicted pixel/feature fully preserve its neighborhood context, impairing diffusion-based image synthesis. As a powerful source of automatic supervisory signal, context has been well studied for learning representations. Inspired by this, we for the first time propose ConPreDiff to improve diffusion-based image synthesis with context prediction. We explicitly reinforce each point to predict its neighborhood context (i.e., multi-stride features/tokens/pixels) with a context decoder at the end of diffusion denoising blocks in training stage, and remove the decoder for inference. In this way, each point can better reconstruct itself by preserving its semantic connections with neighborhood context. This new paradigm of ConPreDiff can generalize to arbitrary discrete and continuous diffusion backbones without introducing extra parameters in sampling procedure. Extensive experiments are conducted on unconditional image generation, text-to-image generation and image inpainting tasks. Our ConPreDiff consistently outperforms previous methods and achieves a new SOTA text-to-image generation results on MS-COCO, with a zero-shot FID score of 6.21.

Jingwei Liu, Ling Yang, Hongyan Li et al.

While time series diffusion models have received considerable focus from many recent works, the performance of existing models remains highly unstable. Factors limiting time series diffusion models include insufficient time series datasets and the absence of guidance. To address these limitations, we propose a Retrieval- Augmented Time series Diffusion model (RATD). The framework of RATD consists of two parts: an embedding-based retrieval process and a reference-guided diffusion model. In the first part, RATD retrieves the time series that are most relevant to historical time series from the database as references. The references are utilized to guide the denoising process in the second part. Our approach allows leveraging meaningful samples within the database to aid in sampling, thus maximizing the utilization of datasets. Meanwhile, this reference-guided mechanism also compensates for the deficiencies of existing time series diffusion models in terms of guidance. Experiments and visualizations on multiple datasets demonstrate the effectiveness of our approach, particularly in complicated prediction tasks.

Guangkun Nie, Jiabao Zhu, Gongzheng Tang et al.

Photoplethysmography (PPG) is a highly promising device due to its advantages in portability, user-friendly operation, and non-invasive capabilities to measure a wide range of physiological information. Recent advancements in deep learning have demonstrated remarkable outcomes by leveraging PPG signals for tasks related to personal health management and other multifaceted applications. In this review, we systematically reviewed papers that applied deep learning models to process PPG data between January 1st of 2017 and July 31st of 2023 from Google Scholar, PubMed and Dimensions. Each paper is analyzed from three key perspectives: tasks, models, and data. We finally extracted 193 papers where different deep learning frameworks were used to process PPG signals. Based on the tasks addressed in these papers, we categorized them into two major groups: medical-related, and non-medical-related. The medical-related tasks were further divided into seven subgroups, including blood pressure analysis, cardiovascular monitoring and diagnosis, sleep health, mental health, respiratory monitoring and analysis, blood glucose analysis, as well as others. The non-medical-related tasks were divided into four subgroups, which encompass signal processing, biometric identification, electrocardiogram reconstruction, and human activity recognition. In conclusion, significant progress has been made in the field of using deep learning methods to process PPG data recently. This allows for a more thorough exploration and utilization of the information contained in PPG signals. However, challenges remain, such as limited quantity and quality of publicly available databases, a lack of effective validation in real-world scenarios, and concerns about the interpretability, scalability, and complexity of deep learning models. Moreover, there are still emerging research areas that require further investigation.

Yongfan Lai, Jiabo Chen, Deyun Zhang et al.

Heart disease remains a significant threat to human health. As a non-invasive diagnostic tool, the electrocardiogram (ECG) is one of the most widely used methods for cardiac screening. However, the scarcity of high-quality ECG data, driven by privacy concerns and limited medical resources, creates a pressing need for effective ECG signal generation. Existing approaches for generating ECG signals typically rely on small training datasets, lack comprehensive evaluation frameworks, and overlook potential applications beyond data augmentation. To address these challenges, we propose DiffuSETS, a novel framework capable of generating ECG signals with high semantic alignment and fidelity. DiffuSETS accepts various modalities of clinical text reports and patient-specific information as inputs, enabling the creation of clinically meaningful ECG signals. Additionally, to address the lack of standardized evaluation in ECG generation, we introduce a comprehensive benchmarking methodology to assess the effectiveness of generative models in this domain. Our model achieve excellent results in tests, proving its superiority in the task of ECG generation. Furthermore, we showcase its potential to mitigate data scarcity while exploring novel applications in cardiology education and medical knowledge discovery, highlighting the broader impact of our work.

Zenghui Lin, Xintong Liu, Nan Wang et al.

Long-term fetal heart rate (FHR) monitoring during the antepartum period, increasingly popularized by electronic FHR monitoring, represents a growing approach in FHR monitoring. This kind of continuous monitoring, in contrast to the short-term one, collects an extended period of fetal heart data. This offers a more comprehensive understanding of fetus's conditions. However, the interpretation of long-term antenatal fetal heart monitoring is still in its early stages, lacking corresponding clinical standards. Furthermore, the substantial amount of data generated by continuous monitoring imposes a significant burden on clinical work when analyzed manually. To address above challenges, this study develops an automatic analysis system named LARA (Long-term Antepartum Risk Analysis system) for continuous FHR monitoring, combining deep learning and information fusion methods. LARA's core is a well-established convolutional neural network (CNN) model. It processes long-term FHR data as input and generates a Risk Distribution Map (RDM) and Risk Index (RI) as the analysis results. We evaluate LARA on inner test dataset, the performance metrics are as follows: AUC 0.872, accuracy 0.816, specificity 0.811, sensitivity 0.806, precision 0.271, and F1 score 0.415. In our study, we observe that long-term FHR monitoring data with higher RI is more likely to result in adverse outcomes (p=0.0021). In conclusion, this study introduces LARA, the first automated analysis system for long-term FHR monitoring, initiating the further explorations into its clinical value in the future.

Shun Huang, Wenlu Xing, Shijia Geng et al.

Malignant ventricular arrhythmias (VT/VF) following acute myocardial infarction (AMI) are a major cause of in-hospital death, yet early identification remains a clinical challenge. While traditional risk scores have limited performance, end-to-end deep learning models often lack the interpretability needed for clinical trust. This study aimed to develop a hybrid predictive framework that integrates a large-scale electrocardiogram (ECG) foundation model (ECGFounder) with an interpretable XGBoost classifier to improve both accuracy and interpretability. We analyzed 6,634 ECG recordings from AMI patients, among whom 175 experienced in-hospital VT/VF. The ECGFounder model was used to extract 150-dimensional diagnostic probability features , which were then refined through feature selection to train the XGBoost classifier. Model performance was evaluated using AUC and F1-score , and the SHAP method was used for interpretability. The ECGFounder + XGBoost hybrid model achieved an AUC of 0.801 , outperforming KNN (AUC 0.677), RNN (AUC 0.676), and an end-to-end 1D-CNN (AUC 0.720). SHAP analysis revealed that model-identified key features, such as "premature ventricular complexes" (risk predictor) and "normal sinus rhythm" (protective factor), were highly consistent with clinical knowledge. We conclude that this hybrid framework provides a novel paradigm for VT/VF risk prediction by validating the use of foundation model outputs as effective, automated feature engineering for building trustworthy, explainable AI-based clinical decision support systems.

Guangkun Nie, Gongzheng Tang, Shenda Hong

Imbalanced data distributions are prevalent in real-world scenarios, posing significant challenges in both imbalanced classification and imbalanced regression tasks. They often cause deep learning models to overfit in areas of high sample density (many-shot regions) while underperforming in areas of low sample density (few-shot regions). This characteristic restricts the utility of deep learning models in various sectors, notably healthcare, where areas with few-shot data hold greater clinical relevance. While recent studies have shown the benefits of incorporating distribution information in imbalanced classification tasks, such strategies are rarely explored in imbalanced regression. In this paper, we address this issue by introducing a novel loss function, termed Dist Loss, designed to minimize the distribution distance between the model's predictions and the target labels in a differentiable manner, effectively integrating distribution information into model training. Dist Loss enables deep learning models to regularize their output distribution during training, effectively enhancing their focus on few-shot regions. We have conducted extensive experiments across three datasets spanning computer vision and healthcare: IMDB-WIKI-DIR, AgeDB-DIR, and ECG-Ka-DIR. The results demonstrate that Dist Loss effectively mitigates the negative impact of imbalanced data distribution on model performance, achieving state-of-the-art results in sparse data regions. Furthermore, Dist Loss is easy to integrate, complementing existing methods.

Chenxi Sun, Hongyan Li, Moxian Song et al.

Time series widely exists in real-world applications and many deep learning models have performed well on it. Current research has shown the importance of learning strategy for models, suggesting that the benefit is the order and size of learning samples. However, no effective strategy has been proposed for time series due to its abstract and dynamic construction. Meanwhile, the existing one-shot tasks and continuous tasks for time series necessitate distinct learning processes and mechanisms. No all-purpose approach has been suggested. In this work, we propose a novel Curricular and CyclicaL loss (CRUCIAL) to learn time series for the first time. It is model- and task-agnostic and can be plugged on top of the original loss with no extra procedure. CRUCIAL has two characteristics: It can arrange an easy-to-hard learning order by dynamically determining the sample contribution and modulating the loss amplitude; It can manage a cyclically changed dataset and achieve an adaptive cycle by correlating the loss distribution and the selection probability. We prove that compared with monotonous size, cyclical size can reduce expected error. Experiments on 3 kinds of tasks and 5 real-world datasets show the benefits of CRUCIAL for most deep learning models when learning time series.

Bin Liu, Qinghao Zhao, Yuxi Zhou et al.

Right heart failure (RHF) is a disease characterized by abnormalities in the structure or function of the right ventricle (RV), which is associated with high morbidity and mortality. Lung disease often causes increased right ventricular load, leading to RHF. Therefore, it is very important to screen out patients with cor pulmonale who develop RHF from people with underlying lung diseases. In this work, we propose a self-supervised representation learning method to early detecting RHF from patients with cor pulmonale, which uses spirogram time series to predict patients with RHF at an early stage. The proposed model is divided into two stages. The first stage is the self-supervised representation learning-based spirogram embedding (SLSE) network training process, where the encoder of the Variational autoencoder (VAE-encoder) learns a robust low-dimensional representation of the spirogram time series from the data-augmented unlabeled data. Second, this low-dimensional representation is fused with demographic information and fed into a CatBoost classifier for the downstream RHF prediction task. Trained and tested on a carefully selected subset of 26,617 individuals from the UK Biobank, our model achieved an AUROC of 0.7501 in detecting RHF, demonstrating strong population-level distinction ability. We further evaluated the model on high-risk clinical subgroups, achieving AUROC values of 0.8194 on a test set of 74 patients with chronic kidney disease (CKD) and 0.8413 on a set of 64 patients with valvular heart disease (VHD). These results highlight the model's potential utility in predicting RHF among clinically elevated-risk populations. In conclusion, this study presents a self-supervised representation learning approach combining spirogram time series and demographic data, demonstrating promising potential for early RHF detection in clinical practice.

Jinshuai Gu, Zenghui Lin, Jingying Ma et al.

Cardiotocography (CTG) is a low-cost, non-invasive fetal health assessment technique used globally, especially in underdeveloped countries. However, it is currently mainly used to identify the fetus's current status (e.g., fetal acidosis or hypoxia), and the potential of CTG in predicting future adverse pregnancy outcomes has not been fully explored. We aim to develop an AI-based model that predicts biological age from CTG time series (named CTGage), then calculate the age gap between CTGage and actual age (named CTGage-gap), and use this gap as a new digital biomarker for future adverse pregnancy outcomes. The CTGage model is developed using 61,140 records from 11,385 pregnant women, collected at Peking University People's Hospital between 2018 and 2022. For model training, a structurally designed 1D convolutional neural network is used, incorporating distribution-aligned augmented regression technology. The CTGage-gap is categorized into five groups: < -21 days (underestimation group), -21 to -7 days, -7 to 7 days (normal group), 7 to 21 days, and > 21 days (overestimation group). We further defined the underestimation group and overestimation group together as the high-risk group. We then compare the incidence of adverse outcomes and maternal diseases across these groups. The average absolute error of the CTGage model is 10.91 days. When comparing the overestimation group with the normal group, premature infants incidence is 5.33% vs. 1.42% (p < 0.05) and gestational diabetes mellitus (GDM) incidence is 31.93% vs. 20.86% (p < 0.05). When comparing the underestimation group with the normal group, low birth weight incidence is 0.17% vs. 0.15% (p < 0.05) and anaemia incidence is 37.51% vs. 34.74% (p < 0.05). Artificial intelligence-derived CTGage can predict the future risk of adverse pregnancy outcomes and hold potential as a novel, non-invasive, and easily accessible digital biomarker.

Shuhao Mei, Yongchao Long, Shan Cao et al.

Chronic Obstructive Pulmonary Disease (COPD), a major chronic respiratory disease with persistent airflow limitation, is a leading global cause of disability and mortality. Respiratory spirogram time series, routinely collected during pulmonary function tests (PFTs), play a critical role in the early detection of repsiratory diseases and in monitoring lung function over time. However, most current AI models for COPD diagnosis are limited to outputting classification results without providing a rationale for their diagnostic process, while current Large Language Models (LLMs) cannot understand spirograms yet, which severely limits their clinical trust and adoption. To tackle this challenge, we leverage a cohort of 234,028 individuals from the UK Biobank (UKB) to propose SpiroLLM, the first multimodal large language model that can understand spirogram. The model extracts morphological features from respiratory curves via a SpiroEncoder and aligns them with PFT numerical values in a unified latent space using a SpiroProjector, ultimately empowering a large language model to generate a comprehensive diagnostic report. Experimental results confirm that SpiroLLM achieved a diagnostic AUROC of 0.8980 (95% CI: 0.8820-0.9132). In a robustness test with missing core data, it maintained a 100% valid response rate, far surpassing the 13.4% of a text-only model and showcasing the superiority of its multimodal design. This work demonstrates the substantial potential of deeply fusing physiological signals with large language models, establishing a new paradigm for the next generation of interpretable and reliable clinical decision support tools.

Deyun Zhang, Xiang Lan, Shijia Geng et al.

Electrocardiogram (ECG) plays a foundational role in modern cardiovascular care, enabling non-invasive diagnosis of arrhythmias, myocardial ischemia, and conduction disorders. While machine learning has achieved expert-level performance in ECG interpretation, the development of clinically deployable multimodal AI systems remains constrained, primarily due to the lack of publicly available datasets that simultaneously incorporate raw signals, diagnostic images, and interpretation text. Most existing ECG datasets provide only single-modality data or, at most, dual modalities, making it difficult to build models that can understand and integrate diverse ECG information in real-world settings. To address this gap, we introduce MEETI (MIMIC-IV-Ext ECG-Text-Image), the first large-scale ECG dataset that synchronizes raw waveform data, high-resolution plotted images, and detailed textual interpretations generated by large language models. In addition, MEETI includes beat-level quantitative ECG parameters extracted from each lead, offering structured parameters that support fine-grained analysis and model interpretability. Each MEETI record is aligned across four components: (1) the raw ECG waveform, (2) the corresponding plotted image, (3) extracted feature parameters, and (4) detailed interpretation text. This alignment is achieved using consistent, unique identifiers. This unified structure supports transformer-based multimodal learning and supports fine-grained, interpretable reasoning about cardiac health. By bridging the gap between traditional signal analysis, image-based interpretation, and language-driven understanding, MEETI established a robust foundation for the next generation of explainable, multimodal cardiovascular AI. It offers the research community a comprehensive benchmark for developing and evaluating ECG-based AI systems.

Jingying Ma, Jinwei Wang, Lanlan Lu et al.

Background: Chronic kidney disease (CKD), a progressive disease with high morbidity and mortality, has become a significant global public health problem. Most existing models are static and fail to capture temporal trends in disease progression, limiting their ability to inform timely interventions. We address this gap by developing a dynamic model that leverages common longitudinal clinical indicators from real-world Electronic Health Records (EHRs) for real-time kidney failure prediction. Findings: A retrospective cohort of 4,587 patients from Yinzhou, China, was used for model development (2,752 patients for training, 917 patients for validation) and internal validation (918 patients), while external validation was conducted on a prospective PKUFH cohort (934 patients). The model demonstrated competitive performance across datasets, with an AUROC of 0.9311 (95%CI, 0.8873-0.9749) in the internal validation cohort and 0.8141 (95%CI, 0.7728-0.8554) in the external validation cohort, alongside progressively improving dynamic predictions, good calibration, and clinically consistent interpretability. KFDeep has been deployed on an open-access website and in primary care settings. Interpretation: The KFDeep model enables dynamic prediction of kidney failure without increasing clinical examination costs. It has been integrated into existing hospital systems, providing physicians with a continuously updated decision-support tool in routine care.

Shuhao Mei, Xin Li, Yuxi Zhou et al.

Chronic Obstructive Pulmonary Disease (COPD) is a chronic lung condition characterized by airflow obstruction. Current diagnostic methods primarily rely on identifying prominent features in spirometry (Volume-Flow time series) to detect COPD, but they are not adept at predicting future COPD risk based on subtle data patterns. In this study, we introduce a novel deep learning-based approach, DeepSpiro, aimed at the early prediction of future COPD risk. DeepSpiro consists of four key components: SpiroSmoother for stabilizing the Volume-Flow curve, SpiroEncoder for capturing volume variability-pattern through key patches of varying lengths, SpiroExplainer for integrating heterogeneous data and explaining predictions through volume attention, and SpiroPredictor for predicting the disease risk of undiagnosed high-risk patients based on key patch concavity, with prediction horizons of 1, 2, 3, 4, 5 years, or even longer. Evaluated on the UK Biobank dataset, DeepSpiro achieved an AUC of 0.8328 for COPD detection and demonstrated strong predictive performance for future COPD risk (p-value < 0.001). In summary, DeepSpiro can effectively predicts the long-term progression of the COPD disease.

Chenxi Sun, Hongyan Li, Yaliang Li et al.

Data is essential to performing time series analysis utilizing machine learning approaches, whether for classic models or today's large language models. A good time-series dataset is advantageous for the model's accuracy, robustness, and convergence, as well as task outcomes and costs. The emergence of data-centric AI represents a shift in the landscape from model refinement to prioritizing data quality. Even though time-series data processing methods frequently come up in a wide range of research fields, it hasn't been well investigated as a specific topic. To fill the gap, in this paper, we systematically review different data-centric methods in time series analysis, covering a wide range of research topics. Based on the time-series data characteristics at sample, feature, and period, we propose a taxonomy for the reviewed data selection methods. In addition to discussing and summarizing their characteristics, benefits, and drawbacks targeting time-series data, we also introduce the challenges and opportunities by proposing recommendations, open problems, and possible research topics.

Bin Huang, Changchen Zhao, Zimeng Liu et al.

Good health and well-being is among key issues in the United Nations 2030 Sustainable Development Goals. The rising prevalence of large-scale infectious diseases and the accelerated aging of the global population are driving the transformation of healthcare technologies. In this context, establishing large-scale public health datasets, developing medical models, and creating decision-making systems with a human-centric approach are of strategic significance. Recently, by leveraging the extraordinary number of accessible cameras, groundbreaking advancements have emerged in AI methods for physiological signal monitoring and disease diagnosis using camera sensors. These approaches, requiring no specialized medical equipment, offer convenient manners of collecting large-scale medical data in response to public health events. Therefore, we outline a prospective framework and heuristic vision for a camera-based public health (CBPH) framework utilizing visual physiological monitoring technology. The CBPH can be considered as a convenient and universal framework for public health, advancing the United Nations Sustainable Development Goals, particularly in promoting the universality, sustainability, and equity of healthcare in low- and middle-income countries or regions. Furthermore, CBPH provides a comprehensive solution for building a large-scale and human-centric medical database, and a multi-task large medical model for public health and medical scientific discoveries. It has a significant potential to revolutionize personal monitoring technologies, digital medicine, telemedicine, and primary health care in public health. Therefore, it can be deemed that the outcomes of this paper will contribute to the establishment of a sustainable and fair framework for public health, which serves as a crucial bridge for advancing scientific discoveries in the realm of AI for medicine (AI4Medicine).

Chenxi Sun, Hongyan Li, Moxian Song et al.

Spiking Neural Networks (SNNs) have a greater potential for modeling time series data than Artificial Neural Networks (ANNs), due to their inherent neuron dynamics and low energy consumption. However, it is difficult to demonstrate their superiority in classification accuracy, because current efforts mainly focus on designing better network structures. In this work, enlighten by brain-inspired science, we find that, not only the structure but also the learning process should be human-like. To achieve this, we investigate the power of Curriculum Learning (CL) on SNNs by designing a novel method named CSNN with two theoretically guaranteed mechanisms: The active-to-dormant training order makes the curriculum similar to that of human learning and suitable for spiking neurons; The value-based regional encoding makes the neuron activity to mimic the brain memory when learning sequential data. Experiments on multiple time series sources including simulated, sensor, motion, and healthcare demonstrate that CL has a more positive effect on SNNs than ANNs with about twice the accuracy change, and CSNN can increase about 3% SNNs' accuracy by improving network sparsity, neuron firing status, anti-noise ability, and convergence speed.

Wenrui Zhang, Xinxin Di, Guodong Wei et al.

With the development of deep learning-based methods, automated classification of electrocardiograms (ECGs) has recently gained much attention. Although the effectiveness of deep neural networks has been encouraging, the lack of information given by the outputs restricts clinicians' reexamination. If the uncertainty estimation comes along with the classification results, cardiologists can pay more attention to "uncertain" cases. Our study aims to classify ECGs with rejection based on data uncertainty and model uncertainty. We perform experiments on a real-world 12-lead ECG dataset. First, we estimate uncertainties using the Monte Carlo dropout for each classification prediction, based on our Bayesian neural network. Then, we accept predictions with uncertainty under a given threshold and provide "uncertain" cases for clinicians. Furthermore, we perform a simulation experiment using varying thresholds. Finally, with the help of a clinician, we conduct case studies to explain the results of large uncertainties and incorrect predictions with small uncertainties. The results show that correct predictions are more likely to have smaller uncertainties, and the performance on accepted predictions improves as the accepting ratio decreases (i.e. more rejections). Case studies also help explain why rejection can improve the performance. Our study helps neural networks produce more accurate results and provide information on uncertainties to better assist clinicians in the diagnosis process. It can also enable deep-learning-based ECG interpretation in clinical implementation.

Wenrui Zhang, Shijia Geng, Shenda Hong

Learning representations from electrocardiogram (ECG) signals can serve as a fundamental step for different machine learning-based ECG tasks. In order to extract general ECG representations that can be adapted to various downstream tasks, the learning process needs to be based on a general ECG-related task which can be achieved through self-supervised learning (SSL). However, existing SSL approaches either fail to provide satisfactory ECG representations or require too much effort to construct the learning data. In this paper, we propose the T-S reverse detection, a simple yet effective self-supervised approach to learn ECG representations. Inspired by the temporal and spatial characteristics of ECG signals, we flip the original signals horizontally (temporal reverse), vertically (spatial reverse), and both horizontally and vertically (temporal-spatial reverse). Learning is then done by classifying four types of signals including the original one. To verify the effectiveness of the proposed method, we perform a downstream task to detect atrial fibrillation (AF) which is one of the most common ECG tasks. The results show that the ECG representations learned with our method achieve remarkable performance. Furthermore, after exploring the representation feature space and investigating salient ECG locations, we conclude that the temporal reverse is more effective for learning ECG representations than the spatial reverse.

Wenrui Zhang, Shijia Geng, Zhaoji Fu et al.

Ventricular arrhythmias (VA) are the main causes of sudden cardiac death. Developing machine learning methods for detecting VA based on electrocardiograms (ECGs) can help save people's lives. However, developing such machine learning models for ECGs is challenging because of the following: 1) group-level diversity from different subjects and 2) individual-level diversity from different moments of a single subject. In this study, we aim to solve these problems in the pre-training and fine-tuning stages. For the pre-training stage, we propose a novel model agnostic meta-learning (MAML) with curriculum learning (CL) method to solve group-level diversity. MAML is expected to better transfer the knowledge from a large dataset and use only a few recordings to quickly adapt the model to a new person. CL is supposed to further improve MAML by meta-learning from easy to difficult tasks. For the fine-tuning stage, we propose improved pre-fine-tuning to solve individual-level diversity. We conduct experiments using a combination of three publicly available ECG datasets. The results show that our method outperforms the compared methods in terms of all evaluation metrics. Ablation studies show that MAML and CL could help perform more evenly, and pre-fine-tuning could better fit the model to training data.

Ling Yang, Shenda Hong

Unsupervised/self-supervised time series representation learning is a challenging problem because of its complex dynamics and sparse annotations. Existing works mainly adopt the framework of contrastive learning with the time-based augmentation techniques to sample positives and negatives for contrastive training. Nevertheless, they mostly use segment-level augmentation derived from time slicing, which may bring about sampling bias and incorrect optimization with false negatives due to the loss of global context. Besides, they all pay no attention to incorporate the spectral information in feature representation. In this paper, we propose a unified framework, namely Bilinear Temporal-Spectral Fusion (BTSF). Specifically, we firstly utilize the instance-level augmentation with a simple dropout on the entire time series for maximally capturing long-term dependencies. We devise a novel iterative bilinear temporal-spectral fusion to explicitly encode the affinities of abundant time-frequency pairs, and iteratively refines representations in a fusion-and-squeeze manner with Spectrum-to-Time (S2T) and Time-to-Spectrum (T2S) Aggregation modules. We firstly conducts downstream evaluations on three major tasks for time series including classification, forecasting and anomaly detection. Experimental results shows that our BTSF consistently significantly outperforms the state-of-the-art methods.

Ling Yang, Shenda Hong, Luxia Zhang

Few-shot Time Series Classification (few-shot TSC) is a challenging problem in time series analysis. It is more difficult to classify when time series of the same class are not completely consistent in spectral domain or time series of different classes are partly consistent in spectral domain. To address this problem, we propose a novel method named Spectral Propagation Graph Network (SPGN) to explicitly model and propagate the spectrum-wise relations between different time series with graph network. To the best of our knowledge, SPGN is the first to utilize spectral comparisons in different intervals and involve spectral propagation across all time series with graph networks for few-shot TSC. SPGN first uses bandpass filter to expand time series in spectral domain for calculating spectrum-wise relations between time series. Equipped with graph networks, SPGN then integrates spectral relations with label information to make spectral propagation. The further study conveys the bi-directional effect between spectral relations acquisition and spectral propagation. We conduct extensive experiments on few-shot TSC benchmarks. SPGN outperforms state-of-the-art results by a large margin in $4\% \sim 13\%$. Moreover, SPGN surpasses them by around $12\%$ and $9\%$ under cross-domain and cross-way settings respectively.

Xiang Lan, Dianwen Ng, Shenda Hong et al.

Learning information-rich and generalizable representations effectively from unlabeled multivariate cardiac signals to identify abnormal heart rhythms (cardiac arrhythmias) is valuable in real-world clinical settings but often challenging due to its complex temporal dynamics. Cardiac arrhythmias can vary significantly in temporal patterns even for the same patient ($i.e.$, intra subject difference). Meanwhile, the same type of cardiac arrhythmia can show different temporal patterns among different patients due to different cardiac structures ($i.e.$, inter subject difference). In this paper, we address the challenges by proposing an Intra-inter Subject self-supervised Learning (ISL) model that is customized for multivariate cardiac signals. Our proposed ISL model integrates medical knowledge into self-supervision to effectively learn from intra-inter subject differences. In intra subject self-supervision, ISL model first extracts heartbeat-level features from each subject using a channel-wise attentional CNN-RNN encoder. Then a stationarity test module is employed to capture the temporal dependencies between heartbeats. In inter subject self-supervision, we design a set of data augmentations according to the clinical characteristics of cardiac signals and perform contrastive learning among subjects to learn distinctive representations for various types of patients. Extensive experiments on three real-world datasets were conducted. In a semi-supervised transfer learning scenario, our pre-trained ISL model leads about 10% improvement over supervised training when only 1% labeled data is available, suggesting strong generalizability and robustness of the model.

Yen-Hsiu Chou, Shenda Hong, Chenxi Sun et al.

Since data is presented long-tailed in reality, it is challenging for Federated Learning (FL) to train across decentralized clients as practical applications. We present Global-Regularized Personalization (GRP-FED) to tackle the data imbalanced issue by considering a single global model and multiple local models for each client. With adaptive aggregation, the global model treats multiple clients fairly and mitigates the global long-tailed issue. Each local model is learned from the local data and aligns with its distribution for customization. To prevent the local model from just overfitting, GRP-FED applies an adversarial discriminator to regularize between the learned global-local features. Extensive results show that our GRP-FED improves under both global and local scenarios on real-world MIT-BIH and synthesis CIFAR-10 datasets, achieving comparable performance and addressing client imbalance.

Chenxi Sun, Shenda Hong, Moxian Song et al.

Prediction based on Irregularly Sampled Time Series (ISTS) is of wide concern in the real-world applications. For more accurate prediction, the methods had better grasp more data characteristics. Different from ordinary time series, ISTS is characterised with irregular time intervals of intra-series and different sampling rates of inter-series. However, existing methods have suboptimal predictions due to artificially introducing new dependencies in a time series and biasedly learning relations among time series when modeling these two characteristics. In this work, we propose a novel Time Encoding (TE) mechanism. TE can embed the time information as time vectors in the complex domain. It has the the properties of absolute distance and relative distance under different sampling rates, which helps to represent both two irregularities of ISTS. Meanwhile, we create a new model structure named Time Encoding Echo State Network (TE-ESN). It is the first ESNs-based model that can process ISTS data. Besides, TE-ESN can incorporate long short-term memories and series fusion to grasp horizontal and vertical relations. Experiments on one chaos system and three real-world datasets show that TE-ESN performs better than all baselines and has better reservoir property.

Chenxi Sun, Moxian Song, Shenda Hong et al.

Recurrent Neural Networks (RNNs) have demonstrated their outstanding ability in sequence tasks and have achieved state-of-the-art in wide range of applications, such as industrial, medical, economic and linguistic. Echo State Network (ESN) is simple type of RNNs and has emerged in the last decade as an alternative to gradient descent training based RNNs. ESN, with a strong theoretical ground, is practical, conceptually simple, easy to implement. It avoids non-converging and computationally expensive in the gradient descent methods. Since ESN was put forward in 2002, abundant existing works have promoted the progress of ESN, and the recently introduced Deep ESN model opened the way to uniting the merits of deep learning and ESNs. Besides, the combinations of ESNs with other machine learning models have also overperformed baselines in some applications. However, the apparent simplicity of ESNs can sometimes be deceptive and successfully applying ESNs needs some experience. Thus, in this paper, we categorize the ESN-based methods to basic ESNs, DeepESNs and combinations, then analyze them from the perspective of theoretical studies, network designs and specific applications. Finally, we discuss the challenges and opportunities of ESNs by summarizing the open questions and proposing possible future works.

Chenxi Sun, Shenda Hong, Moxian Song et al.

Irregularly sampled time series (ISTS) data has irregular temporal intervals between observations and different sampling rates between sequences. ISTS commonly appears in healthcare, economics, and geoscience. Especially in the medical environment, the widely used Electronic Health Records (EHRs) have abundant typical irregularly sampled medical time series (ISMTS) data. Developing deep learning methods on EHRs data is critical for personalized treatment, precise diagnosis and medical management. However, it is challenging to directly use deep learning models for ISMTS data. On the one hand, ISMTS data has the intra-series and inter-series relations. Both the local and global structures should be considered. On the other hand, methods should consider the trade-off between task accuracy and model complexity and remain generality and interpretability. So far, many existing works have tried to solve the above problems and have achieved good results. In this paper, we review these deep learning methods from the perspectives of technology and task. Under the technology-driven perspective, we summarize them into two categories - missing data-based methods and raw data-based methods. Under the task-driven perspective, we also summarize them into two categories - data imputation-oriented and downstream task-oriented. For each of them, we point out their advantages and disadvantages. Moreover, we implement some representative methods and compare them on four medical datasets with two tasks. Finally, we discuss the challenges and opportunities in this area.

Gabriel Spadon, Shenda Hong, Bruno Brandoli et al.

Time-series forecasting is one of the most active research topics in artificial intelligence. Applications in real-world time series should consider two factors for achieving reliable predictions: modeling dynamic dependencies among multiple variables and adjusting the model's intrinsic hyperparameters. A still open gap in that literature is that statistical and ensemble learning approaches systematically present lower predictive performance than deep learning methods. They generally disregard the data sequence aspect entangled with multivariate data represented in more than one time series. Conversely, this work presents a novel neural network architecture for time-series forecasting that combines the power of graph evolution with deep recurrent learning on distinct data distributions; we named our method Recurrent Graph Evolution Neural Network (ReGENN). The idea is to infer multiple multivariate relationships between co-occurring time-series by assuming that the temporal data depends not only on inner variables and intra-temporal relationships (i.e., observations from itself) but also on outer variables and inter-temporal relationships (i.e., observations from other-selves). An extensive set of experiments was conducted comparing ReGENN with dozens of ensemble methods and classical statistical ones, showing sound improvement of up to 64.87% over the competing algorithms. Furthermore, we present an analysis of the intermediate weights arising from ReGENN, showing that by looking at inter and intra-temporal relationships simultaneously, time-series forecasting is majorly improved if paying attention to how multiple multivariate data synchronously evolve.