Bao T. Nguyen

Tien-Dat Chung, Ba-Thinh Lam, Thanh-Huy Nguyen et al.

Semi-supervised learning (SSL) has become a promising direction for medical image segmentation, enabling models to learn from limited labeled data alongside abundant unlabeled samples. However, existing SSL approaches for multi-modal medical imaging often struggle to exploit the complementary information between modalities due to semantic discrepancies and misalignment across MRI sequences. To address this, we propose a novel semi-supervised multi-modal framework that explicitly enhances modality-specific representations and facilitates adaptive cross-modal information fusion. Specifically, we introduce a Modality-specific Enhancing Module (MEM) to strengthen semantic cues unique to each modality via channel-wise attention, and a learnable Complementary Information Fusion (CIF) module to adaptively exchange complementary knowledge between modalities. The overall framework is optimized using a hybrid objective combining supervised segmentation loss and cross-modal consistency regularization on unlabeled data. Extensive experiments on the BraTS 2019 (HGG subset) demonstrate that our method consistently outperforms strong semi-supervised and multi-modal baselines under 1\%, 5\%, and 10\% labeled data settings, achieving significant improvements in both Dice and Sensitivity scores. Ablation studies further confirm the complementary effects of our proposed MEM and CIF in bridging cross-modality discrepancies and improving segmentation robustness under scarce supervision.

Bao Nguyen, Adam Feldman, Sarath Bethapudi et al.

Medical segmentation is performed to determine the bounds of regions of interest (ROI) prior to surgery. By allowing the study of growth, structure, and behaviour of the ROI in the planning phase, critical information can be obtained, increasing the likelihood of a successful operation. Usually, segmentations are performed manually or via machine learning methods trained on manual annotations. In contrast, this paper proposes a fully automatic, unsupervised inpainting-based brain tumour segmentation system for T1-weighted MRI. First, a deep convolutional neural network (DCNN) is trained to reconstruct missing healthy brain regions. Then, upon application, anomalous regions are determined by identifying areas of highest reconstruction loss. Finally, superpixel segmentation is performed to segment those regions. We show the proposed system is able to segment various sized and abstract tumours and achieves a mean and standard deviation Dice score of 0.771 and 0.176, respectively.

Thien Bao Nguyen, Emanuele Olivetti, Paolo Avesani

Diffusion magnetic resonance imaging (dMRI) and tractography provide means to study the anatomical structures within the white matter of the brain. When studying tractography data across subjects, it is usually necessary to align, i.e. to register, tractographies together. This registration step is most often performed by applying the transformation resulting from the registration of other volumetric images (T1, FA). In contrast with registration methods that "transform" tractographies, in this work, we try to find which streamline in one tractography correspond to which streamline in the other tractography, without any transformation. In other words, we try to find a "mapping" between the tractographies. We propose a graph-based solution for the tractography mapping problem and we explain similarities and differences with the related well-known graph matching problem. Specifically, we define a loss function based on the pairwise streamline distance and reformulate the mapping problem as combinatorial optimization of that loss function. We show preliminary promising results where we compare the proposed method, implemented with simulated annealing, against a standard registration techniques in a task of segmentation of the corticospinal tract.

Emanuele Olivetti, Thien Bao Nguyen, Paolo Avesani

Diffusion magnetic resonance imaging (dMRI) data allow to reconstruct the 3D pathways of axons within the white matter of the brain as a tractography. The analysis of tractographies has drawn attention from the machine learning and pattern recognition communities providing novel challenges such as finding an appropriate representation space for the data. Many of the current learning algorithms require the input to be from a vectorial space. This requirement contrasts with the intrinsic nature of the tractography because its basic elements, called streamlines or tracks, have different lengths and different number of points and for this reason they cannot be directly represented in a common vectorial space. In this work we propose the adoption of the dissimilarity representation which is an Euclidean embedding technique defined by selecting a set of streamlines called prototypes and then mapping any new streamline to the vector of distances from prototypes. We investigate the degree of approximation of this projection under different prototype selection policies and prototype set sizes in order to characterise its use on tractography data. Additionally we propose the use of a scalable approximation of the most effective prototype selection policy that provides fast and accurate dissimilarity approximations of complete tractographies.