Quanying Liu

Ziling Lu, Zongsheng Li, Xinke Shen et al.

Electroencephalography (EEG) supports a variety of brain-computer interface (BCI) tasks ranging from brain-state monitoring to human-LLM interactions. EEG foundation models are emerging, but evaluation remains fragmented due to heterogeneous datasets and nconsistent task protocols. Here, we introduce OmniEEG-Bench, a unified benchmark and downstream task roadmap for EEG foundation models (FMs). It organizes evaluation of EEG FMs into six task families spanning (i) signal reliability, (ii) biometrics and disease, (iii) consciousness and state, (iv) cognition and emotion, (v) naturalistic stimulus decoding, and (vi) motor and interaction, introducing a new generation of tasks not systematically benchmarked in prior EEG FM work. OmniEEG-Bench standardizes model deployment, task definitions, and metrics through a task-card specification, and unifies 54 EEG datasets with consistent evaluation protocols. We benchmark 10 representative EEG foundation models and report a leaderboard that covers diverse evaluation settings. Both pretraining dataset diversity and model size are significantly associated with better average ranks across datasets, revealing scaling-law behavior in EEG foundation models (Figure 1). These results suggest that scaling EEG foundation models requires not only larger architectures but also broader and more diverse pretraining data. The benchmark code is available at https://github.com/ncclab-sustech/omni-eegbench.git.

Fuyuan Qian, Menglong Zhang, Song Wang et al.

Offline meta-reinforcement learning leverages static datasets to enable agents to generalize to unseen environments by combining offline efficiency with meta-learning adaptability, yet it faces key challenges from context and policy distribution shifts. These issues hinder agents from adapting to online environments, and are further exacerbated under sparse-reward settings. As a result, agents often become trapped in an inherent pattern dilemma, failing to achieve robust generalization. In this work, we propose a novel framework that integrates information-theoretic task representation learning with a Transformer-based stochastic world model. Our approach extracts task-defining latent variables that are invariant to behavior policy, thereby effectively mitigating the context distribution shift. To further handle policy shift and model exploitation, we apply a conservative value penalty to imagination-based rollouts, preventing the policy from exploiting model inaccuracies while maintaining robust adaptation. Extensive evaluations demonstrate that our method outperforms state-of-the-art approaches, with superior stability and generalization under out-of-distribution and sparse-reward settings.

Runpeng Hou, Ziyuan Ye, Chengyu Yang et al.

Nonunion is one of the challenges faced by orthopedics clinics for the technical difficulties and high costs in photographing interosseous capillaries. Segmenting vessels and filling capillaries are critical in understanding the obstacles encountered in capillary growth. However, existing datasets for blood vessel segmentation mainly focus on the large blood vessels of the body, and the lack of labeled capillary image datasets greatly limits the methodological development and applications of vessel segmentation and capillary filling. Here, we present a benchmark dataset, named IFCIS-155, consisting of 155 2D capillary images with segmentation boundaries and vessel fillings annotated by biomedical experts, and 19 large-scale, high-resolution 3D capillary images. To obtain better images of interosseous capillaries, we leverage state-of-the-art immunofluorescence imaging techniques to highlight the rich vascular morphology of interosseous capillaries. We conduct comprehensive experiments to verify the effectiveness of the dataset and the benchmarking deep learning models (\eg UNet/UNet++ and the modified UNet/UNet++). Our work offers a benchmark dataset for training deep learning models for capillary image segmentation and provides a potential tool for future capillary research. The IFCIS-155 dataset and code are all publicly available at \url{https://github.com/ncclabsustech/IFCIS-55}.

Chen Wei, Jiachen Zou, Dietmar Heinke et al.

Humans interpret complex visual stimuli using abstract concepts that facilitate decision-making tasks such as food selection and risk avoidance. Similarity judgment tasks are effective for exploring these concepts. However, methods for controllable image generation in concept space are underdeveloped. In this study, we present a novel framework called CoCoG-2, which integrates generated visual stimuli into similarity judgment tasks. CoCoG-2 utilizes a training-free guidance algorithm to enhance generation flexibility. CoCoG-2 framework is versatile for creating experimental stimuli based on human concepts, supporting various strategies for guiding visual stimuli generation, and demonstrating how these stimuli can validate various experimental hypotheses. CoCoG-2 will advance our understanding of the causal relationship between concept representations and behaviors by generating visual stimuli. The code is available at \url{https://github.com/ncclab-sustech/CoCoG-2}.

Youzhi Qu, Xinyao Jian, Wenxin Che et al.

Transfer learning improves the performance of the target task by leveraging the data of a specific source task: the closer the relationship between the source and the target tasks, the greater the performance improvement by transfer learning. In neuroscience, the relationship between cognitive tasks is usually represented by similarity of activated brain regions or neural representation. However, no study has linked transfer learning and neuroscience to reveal the relationship between cognitive tasks. In this study, we propose a transfer learning framework to reflect the relationship between cognitive tasks, and compare the task relations reflected by transfer learning and by the overlaps of brain regions (e.g., neurosynth). Our results of transfer learning create cognitive taskonomy to reflect the relationship between cognitive tasks which is well in line with the task relations derived from neurosynth. Transfer learning performs better in task decoding with fMRI data if the source and target cognitive tasks activate similar brain regions. Our study uncovers the relationship of multiple cognitive tasks and provides guidance for source task selection in transfer learning for neural decoding based on small-sample data.

Wenwei Luo, Wanguang Yin, Quanying Liu et al.

The key to electroencephalography (EEG)-based brain-computer interface (BCI) lies in neural decoding, and its accuracy can be improved by using hybrid BCI paradigms, that is, fusing multiple paradigms. However, hybrid BCIs usually require separate processing processes for EEG signals in each paradigm, which greatly reduces the efficiency of EEG feature extraction and the generalizability of the model. Here, we propose a two-stream convolutional neural network (TSCNN) based hybrid brain-computer interface. It combines steady-state visual evoked potential (SSVEP) and motor imagery (MI) paradigms. TSCNN automatically learns to extract EEG features in the two paradigms in the training process, and improves the decoding accuracy by 25.4% compared with the MI mode, and 2.6% compared with SSVEP mode in the test data. Moreover, the versatility of TSCNN is verified as it provides considerable performance in both single-mode (70.2% for MI, 93.0% for SSVEP) and hybrid-mode scenarios (95.6% for MI-SSVEP hybrid). Our work will facilitate the real-world applications of EEG-based BCI systems.

Junfeng Xia, Wenhao Ye, Xuanye Pan et al.

Current fMRI foundation models primarily rely on a limited range of brain states and mismatched pretraining tasks, restricting their ability to learn generalized representations across diverse brain states. We present \textit{Brain-DiT}, a universal multi-state fMRI foundation model pretrained on 349,898 sessions from 24 datasets spanning resting, task, naturalistic, disease, and sleep states. Unlike prior fMRI foundation models that rely on masked reconstruction in the raw-signal space or a latent space, \textit{Brain-DiT} adopts metadata-conditioned diffusion pretraining with a Diffusion Transformer (DiT), enabling the model to learn multi-scale representations that capture both fine-grained functional structure and global semantics. Across extensive evaluations and ablations on 7 downstream tasks, we find consistent evidence that diffusion-based generative pretraining is a stronger proxy than reconstruction or alignment, with metadata-conditioned pretraining further improving downstream performance by disentangling intrinsic neural dynamics from population-level variability. We also observe that downstream tasks exhibit distinct preferences for representational scale: ADNI classification benefits more from global semantic representations, whereas age/sex prediction comparatively relies more on fine-grained local structure. Code and parameters of Brain-DiT are available at \href{https://github.com/REDMAO4869/Brain-DiT}{Link}.

Wanguang Yin, Zhichao Liang, Jianguo Zhang et al.

Partial least square regression (PLSR) is a widely-used statistical model to reveal the linear relationships of latent factors that comes from the independent variables and dependent variables. However, traditional methods to solve PLSR models are usually based on the Euclidean space, and easily getting stuck into a local minimum. To this end, we propose a new method to solve the partial least square regression, named PLSR via optimization on bi-Grassmann manifold (PLSRbiGr). Specifically, we first leverage the three-factor SVD-type decomposition of the cross-covariance matrix defined on the bi-Grassmann manifold, converting the orthogonal constrained optimization problem into an unconstrained optimization problem on bi-Grassmann manifold, and then incorporate the Riemannian preconditioning of matrix scaling to regulate the Riemannian metric in each iteration. PLSRbiGr is validated with a variety of experiments for decoding EEG signals at motor imagery (MI) and steady-state visual evoked potential (SSVEP) task. Experimental results demonstrate that PLSRbiGr outperforms competing algorithms in multiple EEG decoding tasks, which will greatly facilitate small sample data learning.

Peizhen Yang, Xinke Shen, Zongsheng Li et al.

Identifying causal relationships among distinct brain areas, known as effective connectivity, holds key insights into the brain's information processing and cognitive functions. Electroencephalogram (EEG) signals exhibit intricate dynamics and inter-areal interactions within the brain. However, methods for characterizing nonlinear causal interactions among multiple brain regions remain relatively underdeveloped. In this study, we proposed a data-driven framework to infer effective connectivity by perturbing the trained neural networks. Specifically, we trained neural networks (i.e., CNN, vanilla RNN, GRU, LSTM, and Transformer) to predict future EEG signals according to historical data and perturbed the networks' input to obtain effective connectivity (EC) between the perturbed EEG channel and the rest of the channels. The EC reflects the causal impact of perturbing one node on others. The performance was tested on the synthetic EEG generated by a biological-plausible Jansen-Rit model. CNN and Transformer obtained the best performance on both 3-channel and 90-channel synthetic EEG data, outperforming the classical Granger causality method. Our work demonstrated the potential of perturbing an artificial neural network, learned to predict future system dynamics, to uncover the underlying causal structure.

Mo Wang, Junfeng Xia, Wenhao Ye et al.

Foundation models are emerging as a powerful paradigm for fMRI analysis, but current approaches face a dual bottleneck of data- and training-efficiency. Atlas-based methods aggregate voxel signals into fixed regions of interest, reducing data dimensionality but discarding fine-grained spatial details, and requiring extremely large cohorts to train effectively as general-purpose foundation models. Atlas-free methods, on the other hand, operate directly on voxel-level information - preserving spatial fidelity but are prohibitively memory- and compute-intensive, making large-scale pre-training infeasible. We introduce SLIM-Brain (Sample-efficient, Low-memory fMRI Foundation Model for Human Brain), a new atlas-free foundation model that simultaneously improves both data- and training-efficiency. SLIM-Brain adopts a two-stage adaptive design: (i) a lightweight temporal extractor captures global context across full sequences and ranks data windows by saliency, and (ii) a 4D hierarchical encoder (Hiera-JEPA) learns fine-grained voxel-level representations only from the top-$k$ selected windows, while deleting about 70% masked patches. Extensive experiments across seven public benchmarks show that SLIM-Brain establishes new state-of-the-art performance on diverse tasks, while requiring only 4 thousand pre-training sessions and approximately 30% of GPU memory comparing to traditional voxel-level methods.

Chen Wei, Jiachen Zou, Dietmar Heinke et al.

A central question for cognitive science is to understand how humans process visual objects, i.e, to uncover human low-dimensional concept representation space from high-dimensional visual stimuli. Generating visual stimuli with controlling concepts is the key. However, there are currently no generative models in AI to solve this problem. Here, we present the Concept based Controllable Generation (CoCoG) framework. CoCoG consists of two components, a simple yet efficient AI agent for extracting interpretable concept and predicting human decision-making in visual similarity judgment tasks, and a conditional generation model for generating visual stimuli given the concepts. We quantify the performance of CoCoG from two aspects, the human behavior prediction accuracy and the controllable generation ability. The experiments with CoCoG indicate that 1) the reliable concept embeddings in CoCoG allows to predict human behavior with 64.07\% accuracy in the THINGS-similarity dataset; 2) CoCoG can generate diverse objects through the control of concepts; 3) CoCoG can manipulate human similarity judgment behavior by intervening key concepts. CoCoG offers visual objects with controlling concepts to advance our understanding of causality in human cognition. The code of CoCoG is available at \url{https://github.com/ncclab-sustech/CoCoG}.

Junjie Yu, Zhuoli Ouyang, Haotian Deng et al.

Deep neural networks often generalize well despite heavy over-parameterization, challenging classical parameter-based analyses. We study generalization from a representation-centric perspective and analyze how the geometry of learned embeddings controls predictive performance for a fixed trained model. We show that population risk can be bounded by two factors: (i) the intrinsic dimension of the embedding distribution, which determines the convergence rate of empirical embedding distribution to the population distribution in Wasserstein distance, and (ii) the sensitivity of the downstream mapping from embeddings to predictions, characterized by Lipschitz constants. Together, these yield an embedding-dependent error bound that does not rely on parameter counts or hypothesis class complexity. At the final embedding layer, architectural sensitivity vanishes and the bound is dominated by embedding dimension, explaining its strong empirical correlation with generalization performance. Experiments across architectures and datasets validate the theory and demonstrate the utility of embedding-based diagnostics.

Junjie Yu, Wenxiao Ma, Chen Wei et al.

Recent work has found that neural networks with stronger generalization tend to exhibit higher representational alignment with one another across architectures and training paradigms. In this work, we show that models with stronger generalization also align more strongly with human neural activity. Moreover, generalization performance, model--model alignment, and model--brain alignment are all significantly correlated with each other. We further show that these relationships can be explained by a single geometric property of learned representations: the local intrinsic dimension of embeddings. Lower local dimension is consistently associated with stronger model--model alignment, stronger model--brain alignment, and better generalization, whereas global dimension measures fail to capture these effects. Finally, we find that increasing model capacity and training data scale systematically reduces local intrinsic dimension, providing a geometric account of the benefits of scaling. Together, our results identify local intrinsic dimension as a unifying descriptor of representational convergence in artificial and biological systems.

Qingzhu Zhang, Jiani Zhong, Zongsheng Li et al.

Task-specific pre-training is essential when task representations diverge from generic pre-training features. Existing task-general pre-training EEG models struggle with complex tasks like emotion recognition due to mismatches between task-specific features and broad pre-training approaches. This work aims to develop a task-specific multi-dataset joint pre-training framework for cross-dataset emotion recognition, tackling problems of large inter-dataset distribution shifts, inconsistent emotion category definitions, and substantial inter-subject variability. We introduce a cross-dataset covariance alignment loss to align second-order statistical properties across datasets, enabling robust generalization without the need for extensive labels or per-subject calibration. To capture the long-term dependency and complex dynamics of EEG, we propose a hybrid encoder combining a Mamba-like linear attention channel encoder and a spatiotemporal dynamics model. Our method outperforms state-of-the-art large-scale EEG models by an average of 4.57% in AUROC for few-shot emotion recognition and 11.92% in accuracy for zero-shot generalization to a new dataset. Performance scales with the increase of datasets used in pre-training. Multi-dataset joint pre-training achieves a performance gain of 8.55% over single-dataset training. This work provides a scalable framework for task-specific pre-training and highlights its benefit in generalizable affective computing. Our code is available at https://github.com/ncclab-sustech/mdJPT_nips2025.

Mo Wang, Kaining Peng, Jingsheng Tang et al.

Brain atlases are essential for reducing the dimensionality of neuroimaging data and enabling interpretable analysis. However, most existing atlases are predefined, group-level templates with limited flexibility and resolution. We present Deep Cluster Atlas (DCA), a graph-guided deep embedding clustering framework for generating individualized, voxel-wise brain parcellations. DCA combines a pretrained autoencoder with spatially regularized deep clustering to produce functionally coherent and spatially contiguous regions. Our method supports flexible control over resolution and anatomical scope, and generalizes to arbitrary brain structures. We further introduce a standardized benchmarking platform for atlas evaluation, using multiple large-scale fMRI datasets. Across multiple datasets and scales, DCA outperforms state-of-the-art atlases, improving functional homogeneity by 98.8% and silhouette coefficient by 29%, and achieves superior performance in downstream tasks such as autism diagnosis and cognitive decoding. We also observe that a fine-tuned pretrained model achieves superior results on the corresponding task. Codes and models are available at https://github.com/ncclab-sustech/DCA .

Junjie Yu, Chenyi Li, Kexin Lou et al.

Electroencephalogram (EEG) recordings are often contaminated with artifacts. Various methods have been developed to eliminate or weaken the influence of artifacts. However, most of them rely on prior experience for analysis. Here, we propose an deep learning framework to separate neural signal and artifacts in the embedding space and reconstruct the denoised signal, which is called DeepSeparator. DeepSeparator employs an encoder to extract and amplify the features in the raw EEG, a module called decomposer to extract the trend, detect and suppress artifact and a decoder to reconstruct the denoised signal. Besides, DeepSeparator can extract the artifact, which largely increases the model interpretability. The proposed method is tested with a semi-synthetic EEG dataset and a real task-related EEG dataset, suggesting that DeepSeparator outperforms the conventional models in both EOG and EMG artifact removal. DeepSeparator can be extended to multi-channel EEG and data of any length. It may motivate future developments and application of deep learning-based EEG denoising. The code for DeepSeparator is available at https://github.com/ncclabsustech/DeepSeparator.

Junjie Yu, Yue Wang, Zihan Deng et al.

Finetuning pretrained models occurs in a low-dimensional subspace of the full parameter space. Prior work has focused on characterizing this optimization subspace, but largely ignored the complementary question: why do certain directions remain unexplored during finetuning? Are these stable directions irrelevant to downstream tasks, or do they already encode task-relevant structure that requires no further adjustment? Answering this question is central to understanding how pretrained knowledge transfers. Through systematic spectral analysis across vision and language models, we show that the leading singular vectors of pretrained weight matrices remain highly stable under finetuning and are shared across unrelated downstream tasks, revealing that pretraining establishes a reusable spectral coordinate system. Models pretrained on larger datasets exhibit greater spectral stability under distribution shift or task change, directly linking pretraining scale to geometric transferability. Motivated by these findings, we propose a parameter-efficient method that freezes pretrained singular vectors and optimizes only leading spectral coefficients, achieving competitive performance on GLUE with 0.2% trainable parameters. Our results reveal that the stable directions encode transferable structure rather than irrelevant noise: successful pretraining discovers spectral bases that downstream tasks inherit and operate within.

Youzhi Qu, Chen Wei, Penghui Du et al.

During the evolution of large models, performance evaluation is necessarily performed to assess their capabilities and ensure safety before practical application. However, current model evaluations mainly rely on specific tasks and datasets, lacking a united framework for assessing the multidimensional intelligence of large models. In this perspective, we advocate for a comprehensive framework of cognitive science-inspired artificial general intelligence (AGI) tests, aimed at fulfilling the testing needs of large models with enhanced capabilities. The cognitive science-inspired AGI tests encompass the full spectrum of intelligence facets, including crystallized intelligence, fluid intelligence, social intelligence, and embodied intelligence. To assess the multidimensional intelligence of large models, the AGI tests consist of a battery of well-designed cognitive tests adopted from human intelligence tests, and then naturally encapsulates into an immersive virtual community. We propose increasing the complexity of AGI testing tasks commensurate with advancements in large models and emphasizing the necessity for the interpretation of test results to avoid false negatives and false positives. We believe that cognitive science-inspired AGI tests will effectively guide the targeted improvement of large models in specific dimensions of intelligence and accelerate the integration of large models into human society.

Xinke Shen, Lingyi Tao, Xuyang Chen et al.

Neural representations induced by naturalistic stimuli offer insights into how humans respond to stimuli in daily life. Understanding neural mechanisms underlying naturalistic stimuli processing hinges on the precise identification and extraction of the shared neural patterns that are consistently present across individuals. Targeting the Electroencephalogram (EEG) technique, known for its rich spatial and temporal information, this study presents a framework for Contrastive Learning of Shared SpatioTemporal EEG Representations across individuals (CL-SSTER). CL-SSTER utilizes contrastive learning to maximize the similarity of EEG representations across individuals for identical stimuli, contrasting with those for varied stimuli. The network employed spatial and temporal convolutions to simultaneously learn the spatial and temporal patterns inherent in EEG. The versatility of CL-SSTER was demonstrated on three EEG datasets, including a synthetic dataset, a natural speech comprehension EEG dataset, and an emotional video watching EEG dataset. CL-SSTER attained the highest inter-subject correlation (ISC) values compared to the state-of-the-art ISC methods. The latent representations generated by CL-SSTER exhibited reliable spatiotemporal EEG patterns, which can be explained by properties of the naturalistic stimuli. CL-SSTER serves as an interpretable and scalable framework for the identification of inter-subject shared neural representations in naturalistic neuroscience.

Chen Wei, Chi Zhang, Jiachen Zou et al.

Human decision-making in cognitive tasks and daily life exhibits considerable variability, shaped by factors such as task difficulty, individual preferences, and personal experiences. Understanding this variability across individuals is essential for uncovering the perceptual and decision-making mechanisms that humans rely on when faced with uncertainty and ambiguity. We present a computational framework BAM (Boundary Alignment & Manipulation framework) that combines perceptual boundary sampling in ANNs and human behavioral experiments to systematically investigate this phenomenon. Our perceptual boundary sampling algorithm generates stimuli along ANN decision boundaries that intrinsically induce significant perceptual variability. The efficacy of these stimuli is empirically validated through large-scale behavioral experiments involving 246 participants across 116,715 trials, culminating in the variMNIST dataset containing 19,943 systematically annotated images. Through personalized model alignment and adversarial generation, we establish a reliable method for simultaneously predicting and manipulating the divergent perceptual decisions of pairs of participants. This work bridges the gap between computational models and human individual difference research, providing new tools for personalized perception analysis.

Mingkai Zhai, Wei Wang, Zongsheng Li et al.

Epileptic seizure forecasting is a clinically important yet challenging problem in epilepsy research. Existing approaches predominantly rely on neural signals such as electroencephalography (EEG), which require specialized equipment and limit long-term deployment in real-world settings. In contrast, video data provide a non-invasive and accessible alternative, yet existing video-based studies mainly focus on post-onset seizure detection, leaving seizure forecasting largely unexplored. In this work, we formulate a novel task of video-based epileptic seizure forecasting, where short pre-ictal video segments (3-10 seconds) are used to predict whether a seizure will occur within the subsequent 5 seconds. To address the scarcity of annotated human epilepsy videos, we propose a cross-species transfer learning framework that leverages large-scale rodent video data for auxiliary pretraining. This enables the model to capture seizure-related behavioral dynamics that generalize across species. Experimental results demonstrate that our approach achieves over 70% prediction accuracy under a strictly video-only setting and outperforms existing baselines. These findings highlight the potential of cross-species learning for building non-invasive, scalable early-warning systems for epilepsy.

Weibin Li, Wendu Li, Quanying Liu

Higher-order brain connectivity (HOBC), which captures interactions among three or more brain regions, provides richer organizational information than traditional pairwise functional connectivity (FC). Recent studies have begun to infer latent HOBC from noninvasive imaging data, but they mainly focus on static analyses, limiting their applicability in dynamic prediction tasks. To address this gap, we propose DCHO, a unified approach for modeling and forecasting the temporal evolution of HOBC based on a Decomposition-Composition framework, which is applicable to both non-predictive tasks (state classification) and predictive tasks (brain dynamics forecasting). DCHO adopts a decomposition-composition strategy that reformulates the prediction task into two manageable subproblems: HOBC inference and latent trajectory prediction. In the inference stage, we propose a dual-view encoder to extract multiscale topological features and a latent combinatorial learner to capture high-level HOBC information. In the forecasting stage, we introduce a latent-space prediction loss to enhance the modeling of temporal trajectories. Extensive experiments on multiple neuroimaging datasets demonstrate that DCHO achieves superior performance in both non-predictive tasks (state classification) and predictive tasks (brain dynamics forecasting), significantly outperforming existing methods.

Haotian Deng, Chi Zhang, Chen Wei et al.

A fundamental challenge in affective cognitive science is to develop models that accurately capture the relationship between external emotional stimuli and human internal experiences. While ANNs have demonstrated remarkable accuracy in facial expression recognition, their ability to model inter-individual differences in human perception remains underexplored. This study investigates the phenomenon of high perceptual variability-where individuals exhibit significant differences in emotion categorization even when viewing the same stimulus. Inspired by the similarity between ANNs and human perception, we hypothesize that facial expression samples that are ambiguous for ANN classifiers also elicit divergent perceptual judgments among human observers. To examine this hypothesis, we introduce a novel perceptual boundary sampling method to generate facial expression stimuli that lie along ANN decision boundaries. These ambiguous samples form the basis of the varEmotion dataset, constructed through large-scale human behavioral experiments. Our analysis reveals that these ANN-confusing stimuli also provoke heightened perceptual uncertainty in human participants, highlighting shared computational principles in emotion perception. Finally, by fine-tuning ANN representations using behavioral data, we achieve alignment between ANN predictions and both group-level and individual-level human perceptual patterns. Our findings establish a systematic link between ANN decision boundaries and human perceptual variability, offering new insights into personalized modeling of emotional interpretation.

Yuang Cao, Jiachen Zou, Chen Wei et al.

Human memory exhibits significant vulnerability in cognitive tasks and daily life. Comparisons between visual working memory and new perceptual input (e.g., during cognitive tasks) can lead to unintended memory distortions. Previous studies have reported systematic memory distortions after perceptual comparison, but understanding how perceptual comparison affects memory distortions in real-world objects remains a challenge. Furthermore, identifying what visual features contribute to memory vulnerability presents a novel research question. Here, we propose a novel AI-driven framework that generates naturalistic visual stimuli grounded in behaviorally relevant object dimensions to elicit similarity-induced memory biases. We use two types of stimuli -- image wheels created through dimension editing and dimension wheels generated by dimension activation values -- in three visual working memory (VWM) experiments. These experiments assess memory distortions under three conditions: no perceptual comparison, perceptual comparison with image wheels, and perceptual comparison with dimension wheels. The results show that similar dimensions, like similar images, can also induce memory distortions. Specifically, visual dimensions are more prone to distortion than semantic dimensions, indicating that the object dimensions of naturalistic visual stimuli play a significant role in the vulnerability of memory.

Junjie Yu, Wenxiao Ma, Jianyu Zhang et al.

Despite variations in architecture and pretraining strategies, recent studies indicate that large-scale AI models often converge toward similar internal representations that also align with neural activity. We propose that scale-invariance, a fundamental structural principle in natural systems, is a key driver of this convergence. In this work, we propose a multi-scale analytical framework to quantify two core aspects of scale-invariance in AI representations: dimensional stability and structural similarity across scales. We further investigate whether these properties can predict alignment performance with functional Magnetic Resonance Imaging (fMRI) responses in the visual cortex. Our analysis reveals that embeddings with more consistent dimension and higher structural similarity across scales align better with fMRI data. Furthermore, we find that the manifold structure of fMRI data is more concentrated, with most features dissipating at smaller scales. Embeddings with similar scale patterns align more closely with fMRI data. We also show that larger pretraining datasets and the inclusion of language modalities enhance the scale-invariance properties of embeddings, further improving neural alignment. Our findings indicate that scale-invariance is a fundamental structural principle that bridges artificial and biological representations, providing a new framework for evaluating the structural quality of human-like AI systems.

Menglong Zhang, Fuyuan Qian, Quanying Liu

Fast adaptation to new tasks is extremely important for embodied agents in the real world. Meta-reinforcement learning (meta-RL) has emerged as an effective method to enable fast adaptation in unknown environments. Compared to on-policy meta-RL algorithms, off-policy algorithms rely heavily on efficient data sampling strategies to extract and represent the historical trajectories. However, little is known about how different data sampling methods impact the ability of meta-RL agents to represent unknown environments. Here, we investigate the impact of data sampling strategies on the exploration and adaptability of meta-RL agents. Specifically, we conducted experiments with two types of off-policy meta-RL algorithms based on Thompson sampling and Bayes-optimality theories in continuous control tasks within the MuJoCo environment and sparse reward navigation tasks. Our analysis revealed the long-memory and short-memory sequence sampling strategies affect the representation and adaptive capabilities of meta-RL agents. We found that the algorithm based on Bayes-optimality theory exhibited more robust and better adaptability than the algorithm based on Thompson sampling, highlighting the importance of appropriate data sampling strategies for the agent's representation of an unknown environment, especially in the case of sparse rewards.

Youzhi Qu, Junfeng Xia, Xinyao Jian et al.

Data reconstruction is a widely used pre-training task to learn the generalized features for many downstream tasks. Although reconstruction tasks have been applied to neural signal completion and denoising, neural signal reconstruction is less studied. Here, we employ the masked autoencoder (MAE) model to reconstruct functional magnetic resonance imaging (fMRI) data, and utilize a transfer learning framework to obtain the cognitive taskonomy, a matrix to quantify the similarity between cognitive tasks. Our experimental results demonstrate that the MAE model effectively captures the temporal dynamics patterns and interactions within the brain regions, enabling robust cross-subject fMRI signal reconstruction. The cognitive taskonomy derived from the transfer learning framework reveals the relationships among cognitive tasks, highlighting subtask correlations within motor tasks and similarities between emotion, social, and gambling tasks. Our study suggests that the fMRI reconstruction with MAE model can uncover the latent representation and the obtained taskonomy offers guidance for selecting source tasks in neural decoding tasks for improving the decoding performance on target tasks.

Xuming Ran, Jie Zhang, Ziyuan Ye et al.

Artificial neural network (ANN) is a versatile tool to study the neural representation in the ventral visual stream, and the knowledge in neuroscience in return inspires ANN models to improve performance in the task. However, it is still unclear how to merge these two directions into a unified framework. In this study, we propose an integrated framework called Deep Autoencoder with Neural Response (DAE-NR), which incorporates information from ANN and the visual cortex to achieve better image reconstruction performance and higher neural representation similarity between biological and artificial neurons. The same visual stimuli (i.e., natural images) are input to both the mice brain and DAE-NR. The encoder of DAE-NR jointly learns the dependencies from neural spike encoding and image reconstruction. For the neural spike encoding task, the features derived from a specific hidden layer of the encoder are transformed by a mapping function to predict the ground-truth neural response under the constraint of image reconstruction. Simultaneously, for the image reconstruction task, the latent representation obtained by the encoder is assigned to a decoder to restore the original image under the guidance of neural information. In DAE-NR, the learning process of encoder, mapping function and decoder are all implicitly constrained by these two tasks. Our experiments demonstrate that if and only if with the joint learning, DAE-NRs can improve the performance of visual image reconstruction and increase the representation similarity between biological neurons and artificial neurons. The DAE-NR offers a new perspective on the integration of computer vision and neuroscience.

Chen Wei, Kexin Lou, Zhengyang Wang et al.

EEG source localization is an important technical issue in EEG analysis. Despite many numerical methods existed for EEG source localization, they all rely on strong priors and the deep sources are intractable. Here we propose a deep learning framework using spatial basis function decomposition for EEG source localization. This framework combines the edge sparsity prior and Gaussian source basis, called Edge Sparse Basis Network (ESBN). The performance of ESBN is validated by both synthetic data and real EEG data during motor tasks. The results suggest that the supervised ESBN outperforms the traditional numerical methods in synthetic data and the unsupervised fine-tuning provides more focal and accurate localizations in real data. Our proposed deep learning framework can be extended to account for other source priors, and the real-time property of ESBN can facilitate the applications of EEG in brain-computer interfaces and clinics.

Jie Yuan, Xuming Ran, Keyin Liu et al.

Machine learning is playing an increasingly important role in medical image analysis, spawning new advances in the clinical application of neuroimaging. There have been some reviews on machine learning and epilepsy before, and they mainly focused on electrophysiological signals such as electroencephalography (EEG) and stereo electroencephalography (SEEG), while neglecting the potential of neuroimaging in epilepsy research. Neuroimaging has its important advantages in confirming the range of the epileptic region, which is essential in presurgical evaluation and assessment after surgery. However, it is difficult for EEG to locate the accurate epilepsy lesion region in the brain. In this review, we emphasize the interaction between neuroimaging and machine learning in the context of epilepsy diagnosis and prognosis. We start with an overview of epilepsy and typical neuroimaging modalities used in epilepsy clinics, MRI, DWI, fMRI, and PET. Then, we elaborate two approaches in applying machine learning methods to neuroimaging data: i) the conventional machine learning approach combining manual feature engineering and classifiers, ii) the deep learning approach, such as the convolutional neural networks and autoencoders. Subsequently, the application of machine learning on epilepsy neuroimaging, such as segmentation, localization, and lateralization tasks, as well as tasks directly related to diagnosis and prognosis are looked into in detail. Finally, we discuss the current achievements, challenges, and potential future directions in this field, hoping to pave the way for computer-aided diagnosis and prognosis of epilepsy.

Wanguang Yin, Zhengming Ma, Quanying Liu

Linear discriminant analysis (LDA) is a widely used algorithm in machine learning to extract a low-dimensional representation of high-dimensional data, it features to find the orthogonal discriminant projection subspace by using the Fisher discriminant criterion. However, the traditional Euclidean-based methods for solving LDA are easily convergent to spurious local minima and hardly obtain an optimal solution. To address such a problem, in this paper, we propose a novel algorithm namely Riemannian-based discriminant analysis (RDA) for subspace learning. In order to obtain an explicit solution, we transform the traditional Euclidean-based methods to the Riemannian manifold space and use the trust-region method to learn the discriminant projection subspace. We compare the proposed algorithm to existing variants of LDA, as well as the unsupervised tensor decomposition methods on image classification tasks. The numerical results suggest that RDA achieves state-of-the-art performance in classification accuracy.

Wanguang Yin, Youzhi Qu, Zhengming Ma et al.

Tensor decomposition is an effective tool for learning multi-way structures and heterogeneous features from high-dimensional data, such as the multi-view images and multichannel electroencephalography (EEG) signals, are often represented by tensors. However, most of tensor decomposition methods are the linear feature extraction techniques, which are unable to reveal the nonlinear structure within high-dimensional data. To address such problem, a lot of algorithms have been proposed for simultaneously performs linear and non-linear feature extraction. A representative algorithm is the Graph Regularized Non-negative Matrix Factorization (GNMF) for image clustering. However, the normal 2-order graph can only models the pairwise similarity of objects, which cannot sufficiently exploit the complex structures of samples. Thus, we propose a novel method, named Hypergraph Regularized Non-negative Tensor Factorization (HyperNTF), which utilizes hypergraph to encode the complex connections among samples and employs the factor matrix corresponding with last mode of Canonical Polyadic (CP) decomposition as low-dimensional representation. Extensive experiments on synthetic manifolds, real-world image datasets, and EEG signals, demonstrating that HyperNTF outperforms the state-of-the-art methods in terms of dimensionality reduction, clustering, and classification.

Xuming Ran, Mingkun Xu, Qi Xu et al.

Variational auto-encoders (VAEs) are an influential and generally-used class of likelihood-based generative models in unsupervised learning. The likelihood-based generative models have been reported to be highly robust to the out-of-distribution (OOD) inputs and can be a detector by assuming that the model assigns higher likelihoods to the samples from the in-distribution (ID) dataset than an OOD dataset. However, recent works reported a phenomenon that VAE recognizes some OOD samples as ID by assigning a higher likelihood to the OOD inputs compared to the one from ID. In this work, we introduce a new model, namely Bigeminal Priors Variational auto-encoder (BPVAE), to address this phenomenon. The BPVAE aims to enhance the robustness of the VAEs by combing the power of VAE with the two independent priors that belong to the training dataset and simple dataset, which complexity is lower than the training dataset, respectively. BPVAE learns two datasets'features, assigning a higher likelihood for the training dataset than the simple dataset. In this way, we can use BPVAE's density estimate for detecting the OOD samples. Quantitative experimental results suggest that our model has better generalization capability and stronger robustness than the standard VAEs, proving the effectiveness of the proposed approach of hybrid learning by collaborative priors. Overall, this work paves a new avenue to potentially overcome the OOD problem via multiple latent priors modeling.

Xuming Ran, Mingkun Xu, Lingrui Mei et al.

Variational autoencoders (VAEs) are influential generative models with rich representation capabilities from the deep neural network architecture and Bayesian method. However, VAE models have a weakness that assign a higher likelihood to out-of-distribution (OOD) inputs than in-distribution (ID) inputs. To address this problem, a reliable uncertainty estimation is considered to be critical for in-depth understanding of OOD inputs. In this study, we propose an improved noise contrastive prior (INCP) to be able to integrate into the encoder of VAEs, called INCPVAE. INCP is scalable, trainable and compatible with VAEs, and it also adopts the merits from the INCP for uncertainty estimation. Experiments on various datasets demonstrate that compared to the standard VAEs, our model is superior in uncertainty estimation for the OOD data and is robust in anomaly detection tasks. The INCPVAE model obtains reliable uncertainty estimation for OOD inputs and solves the OOD problem in VAE models.

Quanying Liu, Haiyan Wu, Anqi Liu

We model human decision-making behaviors in a risk-taking task using inverse reinforcement learning (IRL) for the purposes of understanding real human decision making under risk. To the best of our knowledge, this is the first work applying IRL to reveal the implicit reward function in human risk-taking decision making and to interpret risk-prone and risk-averse decision-making policies. We hypothesize that the state history (e.g. rewards and decisions in previous trials) are related to the human reward function, which leads to risk-averse and risk-prone decisions. We design features that reflect these factors in the reward function of IRL and learn the corresponding weight that is interpretable as the importance of features. The results confirm the sub-optimal risk-related decisions of human-driven by the personalized reward function. In particular, the risk-prone person tends to decide based on the current pump number, while the risk-averse person relies on burst information from the previous trial and the average end status. Our results demonstrate that IRL is an effective tool to model human decision-making behavior, as well as to help interpret the human psychological process in risk decision-making.