Zhizhang Yuan

Daoze Zhang, Zhizhang Yuan, Junru Chen et al.

Physiological signals serve as indispensable clues for understanding various physiological states of human bodies. Most existing works have focused on a single type of physiological signals for a range of application scenarios. However, as the body is a holistic biological system, the inherent interconnection among various physiological data should not be neglected. In particular, given the brain's role as the control center for vital activities, electroencephalogram (EEG) exhibits significant correlations with other physiological signals. Therefore, the correlation between EEG and other physiological signals holds potential to improve performance in various scenarios. Nevertheless, achieving this goal is still constrained by several challenges: the scarcity of simultaneously collected physiological data, the differences in correlations between various signals, and the correlation differences between various tasks. To address these issues, we propose a unified physiological signal alignment framework, Brant-X, to model the correlation between EEG and other signals. Our approach (1) employs the EEG foundation model to data-efficiently transfer the rich knowledge in EEG to other physiological signals, and (2) introduces the two-level alignment to fully align the semantics of EEG and other signals from different semantic scales. In the experiments, Brant-X achieves state-of-the-art performance compared with task-agnostic and task-specific baselines on various downstream tasks in diverse scenarios, including sleep stage classification, emotion recognition, freezing of gaits detection, and eye movement communication. Moreover, the analysis on the arrhythmia detection task and the visualization in case study further illustrate the effectiveness of Brant-X in the knowledge transfer from EEG to other physiological signals. The model's homepage is at https://github.com/zjunet/Brant-X/.

Gaorui Zhang, Zhizhang Yuan, Jialan Yang et al.

Neural decoding, a critical component of Brain-Computer Interface (BCI), has recently attracted increasing research interest. Previous research has focused on leveraging signal processing and deep learning methods to enhance neural decoding performance. However, the in-depth exploration of model architectures remains underexplored, despite its proven effectiveness in other tasks such as energy forecasting and image classification. In this study, we propose NeuroSketch, an effective framework for neural decoding via systematic architecture optimization. Starting with the basic architecture study, we find that CNN-2D outperforms other architectures in neural decoding tasks and explore its effectiveness from temporal and spatial perspectives. Building on this, we optimize the architecture from macro- to micro-level, achieving improvements in performance at each step. The exploration process and model validations take over 5,000 experiments spanning three distinct modalities (visual, auditory, and speech), three types of brain signals (EEG, SEEG, and ECoG), and eight diverse decoding tasks. Experimental results indicate that NeuroSketch achieves state-of-the-art (SOTA) performance across all evaluated datasets, positioning it as a powerful tool for neural decoding. Our code and scripts are available at https://github.com/Galaxy-Dawn/NeuroSketch.

Fanqi Shen, Enhong Yang, Jiahe Li et al.

Brain Foundation Models (BFMs) are transforming neuroscience by enabling scalable and transferable learning from neural signals, advancing both clinical diagnostics and cutting-edge neuroscience exploration. Their emergence is powered by large-scale clinical recordings, particularly electroencephalography (EEG) and intracranial EEG, which provide rich temporal and spatial representations of brain dynamics. However, despite their rapid proliferation, the field lacks a unified understanding of existing methodologies and a standardized evaluation framework. To fill this gap, we map the benchmark design space along two axes: (i) from the model perspective, we organize BFMs under a self-supervised learning (SSL) taxonomy; and (ii) from the dataset perspective, we summarize common downstream tasks and curate representative public datasets across clinical and human-centric neurotechnology applications. Building on this consolidation, we introduce Brain4FMs, an open evaluation platform with plug-and-play interfaces that integrates 15 representative BFMs and 18 public datasets. It enables standardized comparisons and analysis of how pretraining data, SSL strategies, and architectures affect generalization and downstream performance, guiding more accurate and transferable BFMs. The code is available at https://anonymous.4open.science/r/Brain4FMs-85B8.

Jiahe Li, Junru Chen, Fanqi Shen et al.

Enabling natural communication through brain-computer interfaces (BCIs) remains one of the most profound challenges in neuroscience and neurotechnology. While existing frameworks offer partial solutions, they are constrained by oversimplified semantic representations and a lack of interpretability. To overcome these limitations, we introduce Semantic Intent Decoding (SID), a novel framework that translates neural activity into natural language by modeling meaning as a flexible set of compositional semantic units. SID is built on three core principles: semantic compositionality, continuity and expandability of semantic space, and fidelity in reconstruction. We present BrainMosaic, a deep learning architecture implementing SID. BrainMosaic decodes multiple semantic units from EEG/SEEG signals using set matching and then reconstructs coherent sentences through semantic-guided reconstruction. This approach moves beyond traditional pipelines that rely on fixed-class classification or unconstrained generation, enabling a more interpretable and expressive communication paradigm. Extensive experiments on multilingual EEG and clinical SEEG datasets demonstrate that SID and BrainMosaic offer substantial advantages over existing frameworks, paving the way for natural and effective BCI-mediated communication.

Zhizhang Yuan, Fanqi Shen, Meng Li et al.

Neural electrical activity is fundamental to brain function, underlying a range of cognitive and behavioral processes, including movement, perception, decision-making, and consciousness. Abnormal patterns of neural signaling often indicate the presence of underlying brain diseases. The variability among individuals, the diverse array of clinical symptoms from various brain disorders, and the limited availability of diagnostic classifications, have posed significant barriers to formulating reliable model of neural signals for diverse application contexts. Here, we present BrainWave, the first foundation model for both invasive and non-invasive neural recordings, pretrained on more than 40,000 hours of electrical brain recordings (13.79 TB of data) from approximately 16,000 individuals. Our analysis show that BrainWave outperforms all other competing models and consistently achieves state-of-the-art performance in the diagnosis and identification of neurological disorders. We also demonstrate robust capabilities of BrainWave in enabling zero-shot transfer learning across varying recording conditions and brain diseases, as well as few-shot classification without fine-tuning, suggesting that BrainWave learns highly generalizable representations of neural signals. We hence believe that open-sourcing BrainWave will facilitate a wide range of clinical applications in medicine, paving the way for AI-driven approaches to investigate brain disorders and advance neuroscience research.

Jiahe Li, Xin Chen, Fanqi Shen et al.

Neurological disorders pose major global health challenges, driving advances in brain signal analysis. Scalp electroencephalography (EEG) and intracranial EEG (iEEG) are widely used for diagnosis and monitoring. However, dataset heterogeneity and task variations hinder the development of robust deep learning solutions. This review systematically examines recent advances in deep learning approaches for EEG/iEEG-based neurological diagnostics, focusing on applications across 7 neurological conditions using 46 datasets. For each condition, we review representative methods and their quantitative results, integrating performance comparisons with analyses of data usage, model design, and task-specific adaptations, while highlighting the role of pre-trained multi-task models in achieving scalable, generalizable solutions. Finally, we propose a standardized benchmark to evaluate models across diverse datasets and improve reproducibility, emphasizing how recent innovations are transforming neurological diagnostics toward intelligent, adaptable healthcare systems.

Zhizhang Yuan, Yang Yang, Gaorui Zhang et al.

Speech production and perception are the main ways humans communicate daily. Prior brain-to-text decoding studies have largely focused on a single modality and alphabetic languages. Here, we present a unified brain-to-sentence decoding framework for both speech production and perception in Mandarin Chinese. The framework exhibits strong generalization ability, enabling sentence-level decoding when trained only on single-character data and supporting characters and syllables unseen during training. In addition, it allows direct and controlled comparison of neural dynamics across modalities. Mandarin speech is decoded by first classifying syllable components in Hanyu Pinyin, namely initials and finals, from neural signals, followed by a post-trained large language model (LLM) that maps sequences of toneless Pinyin syllables to Chinese sentences. To enhance LLM decoding, we designed a three-stage post-training and two-stage inference framework based on a 7-billion-parameter LLM, achieving overall performance that exceeds larger commercial LLMs with hundreds of billions of parameters or more. In addition, several characteristics were observed in Mandarin speech production and perception: speech production involved neural responses across broader cortical regions than auditory perception; channels responsive to both modalities exhibited similar activity patterns, with speech perception showing a temporal delay relative to production; and decoding performance was broadly comparable across hemispheres. Our work not only establishes the feasibility of a unified decoding framework but also provides insights into the neural characteristics of Mandarin speech production and perception. These advances contribute to brain-to-text decoding in logosyllabic languages and pave the way toward neural language decoding systems supporting multiple modalities.