10.4LGJun 14, 2022
Applications of Generative Adversarial Networks in Neuroimaging and Clinical NeuroscienceRongguang Wang, Vishnu Bashyam, Zhijian Yang et al.
Generative adversarial networks (GANs) are one powerful type of deep learning models that have been successfully utilized in numerous fields. They belong to a broader family called generative methods, which generate new data with a probabilistic model by learning sample distribution from real examples. In the clinical context, GANs have shown enhanced capabilities in capturing spatially complex, nonlinear, and potentially subtle disease effects compared to traditional generative methods. This review appraises the existing literature on the applications of GANs in imaging studies of various neurological conditions, including Alzheimer's disease, brain tumors, brain aging, and multiple sclerosis. We provide an intuitive explanation of various GAN methods for each application and further discuss the main challenges, open questions, and promising future directions of leveraging GANs in neuroimaging. We aim to bridge the gap between advanced deep learning methods and neurology research by highlighting how GANs can be leveraged to support clinical decision making and contribute to a better understanding of the structural and functional patterns of brain diseases.
4.9SDSep 28, 2024
Sustaining model performance for covid-19 detection from dynamic audio data: Development and evaluation of a comprehensive drift-adaptive frameworkTheofanis Ganitidis, Maria Athanasiou, Konstantinos Mitsis et al.
Background: The COVID-19 pandemic has highlighted the need for robust diagnostic tools capable of detecting the disease from diverse and evolving data sources. Machine learning models, especially convolutional neural networks (CNNs), have shown promise. However, the dynamic nature of real-world data can lead to model drift, where performance degrades over time as the underlying data distribution changes. Addressing this challenge is crucial to maintaining accuracy and reliability in diagnostic applications. Objective: This study aims to develop a framework that monitors model drift and employs adaptation mechanisms to mitigate performance fluctuations in COVID-19 detection models trained on dynamic audio data. Methods: Two crowd-sourced COVID-19 audio datasets, COVID-19 Sounds and COSWARA, were used. Each was divided into development and post-development periods. A baseline CNN model was trained and evaluated using cough recordings from the development period. Maximum mean discrepancy (MMD) was used to detect changes in data distributions and model performance between periods. Upon detecting drift, retraining was triggered to update the baseline model. Two adaptation approaches were compared: unsupervised domain adaptation (UDA) and active learning (AL). Results: UDA improved balanced accuracy by up to 22% and 24% for the COVID-19 Sounds and COSWARA datasets, respectively. AL yielded even greater improvements, with increases of up to 30% and 60%, respectively. Conclusions: The proposed framework addresses model drift in COVID-19 detection, enabling continuous adaptation to evolving data. This approach ensures sustained model performance, contributing to robust diagnostic tools for COVID-19 and potentially other infectious diseases.
1.2NCAug 1, 2023
Visual attention information can be traced on cortical response but not on the retina: evidence from electrophysiological mouse data using natural images as stimuliNikos Melanitis, Konstantina Nikita
Visual attention forms the basis of understanding the visual world. In this work we follow a computational approach to investigate the biological basis of visual attention. We analyze retinal and cortical electrophysiological data from mouse. Visual Stimuli are Natural Images depicting real world scenes. Our results show that in primary visual cortex (V1), a subset of around $10\%$ of the neurons responds differently to salient versus non-salient visual regions. Visual attention information was not traced in retinal response. It appears that the retina remains naive concerning visual attention; cortical response gets modulated to interpret visual attention information. Experimental animal studies may be designed to further explore the biological basis of visual attention we traced in this study. In applied and translational science, our study contributes to the design of improved visual prostheses systems -- systems that create artificial visual percepts to visually impaired individuals by electronic implants placed on either the retina or the cortex.
3.6CVOct 3, 2025Code
Multimodal Carotid Risk Stratification with Large Vision-Language Models: Benchmarking, Fine-Tuning, and Clinical InsightsDaphne Tsolissou, Theofanis Ganitidis, Konstantinos Mitsis et al.
Reliable risk assessment for carotid atheromatous disease remains a major clinical challenge, as it requires integrating diverse clinical and imaging information in a manner that is transparent and interpretable to clinicians. This study investigates the potential of state-of-the-art and recent large vision-language models (LVLMs) for multimodal carotid plaque assessment by integrating ultrasound imaging (USI) with structured clinical, demographic, laboratory, and protein biomarker data. A framework that simulates realistic diagnostic scenarios through interview-style question sequences is proposed, comparing a range of open-source LVLMs, including both general-purpose and medically tuned models. Zero-shot experiments reveal that even if they are very powerful, not all LVLMs can accurately identify imaging modality and anatomy, while all of them perform poorly in accurate risk classification. To address this limitation, LLaVa-NeXT-Vicuna is adapted to the ultrasound domain using low-rank adaptation (LoRA), resulting in substantial improvements in stroke risk stratification. The integration of multimodal tabular data in the form of text further enhances specificity and balanced accuracy, yielding competitive performance compared to prior convolutional neural network (CNN) baselines trained on the same dataset. Our findings highlight both the promise and limitations of LVLMs in ultrasound-based cardiovascular risk prediction, underscoring the importance of multimodal integration, model calibration, and domain adaptation for clinical translation.
7.9LGDec 12, 2024
A comprehensive interpretable machine learning framework for Mild Cognitive Impairment and Alzheimer's disease diagnosisMaria Eleftheria Vlontzou, Maria Athanasiou, Kalliopi Dalakleidi et al.
An interpretable machine learning (ML) framework is introduced to enhance the diagnosis of Mild Cognitive Impairment (MCI) and Alzheimer's disease (AD) by ensuring robustness of the ML models' interpretations. The dataset used comprises volumetric measurements from brain MRI and genetic data from healthy individuals and patients with MCI/AD, obtained through the Alzheimer's Disease Neuroimaging Initiative. The existing class imbalance is addressed by an ensemble learning approach, while various attribution-based and counterfactual-based interpretability methods are leveraged towards producing diverse explanations related to the pathophysiology of MCI/AD. A unification method combining SHAP with counterfactual explanations assesses the interpretability techniques' robustness. The best performing model yielded 87.5% balanced accuracy and 90.8% F1-score. The attribution-based interpretability methods highlighted significant volumetric and genetic features related to MCI/AD risk. The unification method provided useful insights regarding those features' necessity and sufficiency, further showcasing their significance in MCI/AD diagnosis.
9.6HCMay 13, 2024
AIris: An AI-powered Wearable Assistive Device for the Visually ImpairedDionysia Danai Brilli, Evangelos Georgaras, Stefania Tsilivaki et al.
Assistive technologies for the visually impaired have evolved to facilitate interaction with a complex and dynamic world. In this paper, we introduce AIris, an AI-powered wearable device that provides environmental awareness and interaction capabilities to visually impaired users. AIris combines a sophisticated camera mounted on eyewear with a natural language processing interface, enabling users to receive real-time auditory descriptions of their surroundings. We have created a functional prototype system that operates effectively in real-world conditions. AIris demonstrates the ability to accurately identify objects and interpret scenes, providing users with a sense of spatial awareness previously unattainable with traditional assistive devices. The system is designed to be cost-effective and user-friendly, supporting general and specialized tasks: face recognition, scene description, text reading, object recognition, money counting, note-taking, and barcode scanning. AIris marks a transformative step, bringing AI enhancements to assistive technology, enabling rich interactions with a human-like feel.
4.1LGMay 29, 2025
Comparative assessment of fairness definitions and bias mitigation strategies in machine learning-based diagnosis of Alzheimer's disease from MR imagesMaria Eleftheria Vlontzou, Maria Athanasiou, Christos Davatzikos et al.
The present study performs a comprehensive fairness analysis of machine learning (ML) models for the diagnosis of Mild Cognitive Impairment (MCI) and Alzheimer's disease (AD) from MRI-derived neuroimaging features. Biases associated with age, race, and gender in a multi-cohort dataset, as well as the influence of proxy features encoding these sensitive attributes, are investigated. The reliability of various fairness definitions and metrics in the identification of such biases is also assessed. Based on the most appropriate fairness measures, a comparative analysis of widely used pre-processing, in-processing, and post-processing bias mitigation strategies is performed. Moreover, a novel composite measure is introduced to quantify the trade-off between fairness and performance by considering the F1-score and the equalized odds ratio, making it appropriate for medical diagnostic applications. The obtained results reveal the existence of biases related to age and race, while no significant gender bias is observed. The deployed mitigation strategies yield varying improvements in terms of fairness across the different sensitive attributes and studied subproblems. For race and gender, Reject Option Classification improves equalized odds by 46% and 57%, respectively, and achieves harmonic mean scores of 0.75 and 0.80 in the MCI versus AD subproblem, whereas for age, in the same subproblem, adversarial debiasing yields the highest equalized odds improvement of 40% with a harmonic mean score of 0.69. Insights are provided into how variations in AD neuropathology and risk factors, associated with demographic characteristics, influence model fairness.
4.1LGMay 22, 2025
A modular framework for automated evaluation of procedural content generation in serious games with deep reinforcement learning agentsEleftherios Kalafatis, Konstantinos Mitsis, Konstantia Zarkogianni et al.
Serious Games (SGs) are nowadays shifting focus to include procedural content generation (PCG) in the development process as a means of offering personalized and enhanced player experience. However, the development of a framework to assess the impact of PCG techniques when integrated into SGs remains particularly challenging. This study proposes a methodology for automated evaluation of PCG integration in SGs, incorporating deep reinforcement learning (DRL) game testing agents. To validate the proposed framework, a previously introduced SG featuring card game mechanics and incorporating three different versions of PCG for nonplayer character (NPC) creation has been deployed. Version 1 features random NPC creation, while versions 2 and 3 utilize a genetic algorithm approach. These versions are used to test the impact of different dynamic SG environments on the proposed framework's agents. The obtained results highlight the superiority of the DRL game testing agents trained on Versions 2 and 3 over those trained on Version 1 in terms of win rate (i.e. number of wins per played games) and training time. More specifically, within the execution of a test emulating regular gameplay, both Versions 2 and 3 peaked at a 97% win rate and achieved statistically significant higher (p=0009) win rates compared to those achieved in Version 1 that peaked at 94%. Overall, results advocate towards the proposed framework's capability to produce meaningful data for the evaluation of procedurally generated content in SGs.
4.8IVFeb 5, 2022
Machine Learning Method for Functional Assessment of Retinal ModelsNikolas Papadopoulos, Nikos Melanitis, Antonio Lozano et al.
Challenges in the field of retinal prostheses motivate the development of retinal models to accurately simulate Retinal Ganglion Cells (RGCs) responses. The goal of retinal prostheses is to enable blind individuals to solve complex, reallife visual tasks. In this paper, we introduce the functional assessment (FA) of retinal models, which describes the concept of evaluating the performance of retinal models on visual understanding tasks. We present a machine learning method for FA: we feed traditional machine learning classifiers with RGC responses generated by retinal models, to solve object and digit recognition tasks (CIFAR-10, MNIST, Fashion MNIST, Imagenette). We examined critical FA aspects, including how the performance of FA depends on the task, how to optimally feed RGC responses to the classifiers and how the number of output neurons correlates with the model's accuracy. To increase the number of output neurons, we manipulated input images - by splitting and then feeding them to the retinal model and we found that image splitting does not significantly improve the model's accuracy. We also show that differences in the structure of datasets result in largely divergent performance of the retinal model (MNIST and Fashion MNIST exceeded 80% accuracy, while CIFAR-10 and Imagenette achieved ~40%). Furthermore, retinal models which perform better in standard evaluation, i.e. more accurately predict RGC response, perform better in FA as well. However, unlike standard evaluation, FA results can be straightforwardly interpreted in the context of comparing the quality of visual perception.
5.9MED-PHSep 14, 2020
An explainable XGBoost-based approach towards assessing the risk of cardiovascular disease in patients with Type 2 Diabetes MellitusMaria Athanasiou, Konstantina Sfrintzeri, Konstantia Zarkogianni et al.
Cardiovascular Disease (CVD) is an important cause of disability and death among individuals with Diabetes Mellitus (DM). International clinical guidelines for the management of Type 2 DM (T2DM) are founded on primary and secondary prevention and favor the evaluation of CVD related risk factors towards appropriate treatment initiation. CVD risk prediction models can provide valuable tools for optimizing the frequency of medical visits and performing timely preventive and therapeutic interventions against CVD events. The integration of explainability modalities in these models can enhance human understanding on the reasoning process, maximize transparency and embellish trust towards the models' adoption in clinical practice. The aim of the present study is to develop and evaluate an explainable personalized risk prediction model for the fatal or non-fatal CVD incidence in T2DM individuals. An explainable approach based on the eXtreme Gradient Boosting (XGBoost) and the Tree SHAP (SHapley Additive exPlanations) method is deployed for the calculation of the 5-year CVD risk and the generation of individual explanations on the model's decisions. Data from the 5-year follow up of 560 patients with T2DM are used for development and evaluation purposes. The obtained results (AUC = 71.13%) indicate the potential of the proposed approach to handle the unbalanced nature of the used dataset, while providing clinically meaningful insights about the ensemble model's decision process.