Yi Guo

Aokun Chen, Zehao Yu, Xi Yang et al.

Objective: To develop a natural language processing (NLP) system to extract medications and contextual information that help understand drug changes. This project is part of the 2022 n2c2 challenge. Materials and methods: We developed NLP systems for medication mention extraction, event classification (indicating medication changes discussed or not), and context classification to classify medication changes context into 5 orthogonal dimensions related to drug changes. We explored 6 state-of-the-art pretrained transformer models for the three subtasks, including GatorTron, a large language model pretrained using >90 billion words of text (including >80 billion words from >290 million clinical notes identified at the University of Florida Health). We evaluated our NLP systems using annotated data and evaluation scripts provided by the 2022 n2c2 organizers. Results:Our GatorTron models achieved the best F1-scores of 0.9828 for medication extraction (ranked 3rd), 0.9379 for event classification (ranked 2nd), and the best micro-average accuracy of 0.9126 for context classification. GatorTron outperformed existing transformer models pretrained using smaller general English text and clinical text corpora, indicating the advantage of large language models. Conclusion: This study demonstrated the advantage of using large transformer models for contextual medication information extraction from clinical narratives.

Yi Guo, Che Sun, Yunde Jia et al.

Neural 3D scene reconstruction methods have achieved impressive performance when reconstructing complex geometry and low-textured regions in indoor scenes. However, these methods heavily rely on 3D data which is costly and time-consuming to obtain in real world. In this paper, we propose a novel neural reconstruction method that reconstructs scenes using sparse depth under the plane constraints without 3D supervision. We introduce a signed distance function field, a color field, and a probability field to represent a scene. We optimize these fields to reconstruct the scene by using differentiable ray marching with accessible 2D images as supervision. We improve the reconstruction quality of complex geometry scene regions with sparse depth obtained by using the geometric constraints. The geometric constraints project 3D points on the surface to similar-looking regions with similar features in different 2D images. We impose the plane constraints to make large planes parallel or vertical to the indoor floor. Both two constraints help reconstruct accurate and smooth geometry structures of the scene. Without 3D supervision, our method achieves competitive performance compared with existing methods that use 3D supervision on the ScanNet dataset.

Dai Shi, Zhiqi Shao, Yi Guo et al.

Knowledge distillation (KD) has shown great potential for transferring knowledge from a complex teacher model to a simple student model in which the heavy learning task can be accomplished efficiently and without losing too much prediction accuracy. Recently, many attempts have been made by applying the KD mechanism to the graph representation learning models such as graph neural networks (GNNs) to accelerate the model's inference speed via student models. However, many existing KD-based GNNs utilize MLP as a universal approximator in the student model to imitate the teacher model's process without considering the graph knowledge from the teacher model. In this work, we provide a KD-based framework on multi-scaled GNNs, known as graph framelet, and prove that by adequately utilizing the graph knowledge in a multi-scaled manner provided by graph framelet decomposition, the student model is capable of adapting both homophilic and heterophilic graphs and has the potential of alleviating the over-squashing issue with a simple yet effectively graph surgery. Furthermore, we show how the graph knowledge supplied by the teacher is learned and digested by the student model via both algebra and geometry. Comprehensive experiments show that our proposed model can generate learning accuracy identical to or even surpass the teacher model while maintaining the high speed of inference.

Yi Guo, Feng Li, Zhuo Wang

Cloud removal is an essential task in remote sensing data analysis. As the image sensors are distant from the earth ground, it is likely that part of the area of interests is covered by cloud. Moreover, the atmosphere in between creates a constant haze layer upon the acquired images. To recover the ground image, we propose to use scattering model for temporal sequence of images of any scene in the framework of low rank and sparse models. We further develop its variant, which is much faster and yet more accurate. To measure the performance of different methods {\em objectively}, we develop a semi-realistic simulation method to produce cloud cover so that various methods can be quantitatively analysed, which enables detailed study of many aspects of cloud removal algorithms, including verifying the effectiveness of proposed models in comparison with the state-of-the-arts, including deep learning models, and addressing the long standing problem of the determination of regularisation parameters. The latter is companioned with theoretic analysis on the range of the sparsity regularisation parameter and verified numerically.

Tao Song, Yicheng Wu, Minhao Hu et al.

Multimodal MR image synthesis aims to generate missing modality images by effectively fusing and mapping from a subset of available MRI modalities. Most existing methods adopt an image-to-image translation paradigm, treating multiple modalities as input channels. However, these approaches often yield sub-optimal results due to the inherent difficulty in achieving precise feature- or semantic-level alignment across modalities. To address these challenges, we propose an Adaptive Group-wise Interaction Network (AGI-Net) that explicitly models both inter-modality and intra-modality relationships for multimodal MR image synthesis. Specifically, feature channels are first partitioned into predefined groups, after which an adaptive rolling mechanism is applied to conventional convolutional kernels to better capture feature and semantic correspondences between different modalities. In parallel, a cross-group attention module is introduced to enable effective feature fusion across groups, thereby enhancing the network's representational capacity. We validate the proposed AGI-Net on the publicly available IXI and BraTS2023 datasets. Experimental results demonstrate that AGI-Net achieves state-of-the-art performance in multimodal MR image synthesis tasks, confirming the effectiveness of its modality-aware interaction design. We release the relevant code at: https://github.com/zunzhumu/Adaptive-Group-wise-Interaction-Network-for-Multimodal-MRI-Synthesis.git.

Yi Guo, Yihang Dong, Michael Kwok-Po Ng et al.

Brain-computer interfaces (BCIs) with speech decoding from brain recordings have broad application potential in fields such as clinical rehabilitation and cognitive neuroscience. However, current decoding methods remain limited to single-language, single-subject, and single neuroimaging modality settings, restricting their clinical applicability and generalizability. Here we propose a joint multilingual, multi-subject and multimodal decoding framework. It maps diverse brain recordings into a unified semantic space defined by a pre-trained multilingual model (PMM), enabling decoding across multiple languages, multiple subjects and multiple neuroimaging modalities. The proposed framework is validated using non-invasive brain recordings from 159 participants across four languages. Experimental results show that it exhibits strong generalization across multilingual, multi-subject, and multimodal settings. More importantly, the proposed framework can promote linguistic fairness, which is vital for underrepresented languages in BCI applications. The unified semantic space enables cross-lingual mapping enhancement, allowing the framework to boost the decoding performance of underrepresented languages, thereby promoting linguistic fairness. Overall, the proposed framework establishes a new potential paradigm for brain decoding, opening new paths for broader applications of BCI.

Dai Shi, Andi Han, Lequan Lin et al.

Physics-informed Graph Neural Networks have achieved remarkable performance in learning through graph-structured data by mitigating common GNN challenges such as over-smoothing, over-squashing, and heterophily adaption. Despite these advancements, the development of a simple yet effective paradigm that appropriately integrates previous methods for handling all these challenges is still underway. In this paper, we draw an analogy between the propagation of GNNs and particle systems in physics, proposing a model-agnostic enhancement framework. This framework enriches the graph structure by introducing additional nodes and rewiring connections with both positive and negative weights, guided by node labeling information. We theoretically verify that GNNs enhanced through our approach can effectively circumvent the over-smoothing issue and exhibit robustness against over-squashing. Moreover, we conduct a spectral analysis on the rewired graph to demonstrate that the corresponding GNNs can fit both homophilic and heterophilic graphs. Empirical validations on benchmarks for homophilic, heterophilic graphs, and long-term graph datasets show that GNNs enhanced by our method significantly outperform their original counterparts.

Dai Shi, Zhiqi Shao, Yi Guo et al.

This paper presents a comprehensive theoretical analysis of the graph p-Laplacian regularized framelet network (pL-UFG) to establish a solid understanding of its properties. We conduct a convergence analysis on pL-UFG, addressing the gap in the understanding of its asymptotic behaviors. Further by investigating the generalized Dirichlet energy of pL-UFG, we demonstrate that the Dirichlet energy remains non-zero throughout convergence, ensuring the avoidance of over-smoothing issues. Additionally, we elucidate the energy dynamic perspective, highlighting the synergistic relationship between the implicit layer in pL-UFG and graph framelets. This synergy enhances the model's adaptability to both homophilic and heterophilic data. Notably, we reveal that pL-UFG can be interpreted as a generalized non-linear diffusion process, thereby bridging the gap between pL-UFG and differential equations on the graph. Importantly, these multifaceted analyses lead to unified conclusions that offer novel insights for understanding and implementing pL-UFG, as well as other graph neural network (GNN) models. Finally, based on our dynamic analysis, we propose two novel pL-UFG models with manually controlled energy dynamics. We demonstrate empirically and theoretically that our proposed models not only inherit the advantages of pL-UFG but also significantly reduce computational costs for training on large-scale graph datasets.

Yi Guo, Danqing Shi, Mingjuan Guo et al.

Through a natural language interface (NLI) for exploratory visual analysis, users can directly "ask" analytical questions about the given tabular data. This process greatly improves user experience and lowers the technical barriers of data analysis. Existing techniques focus on generating a visualization from a concrete question. However, complex questions, requiring multiple data queries and visualizations to answer, are frequently asked in data exploration and analysis, which cannot be easily solved with the existing techniques. To address this issue, in this paper, we introduce Talk2Data, a natural language interface for exploratory visual analysis that supports answering complex questions. It leverages an advanced deep-learning model to resolve complex questions into a series of simple questions that could gradually elaborate on the users' requirements. To present answers, we design a set of annotated and captioned visualizations to represent the answers in a form that supports interpretation and narration. We conducted an ablation study and a controlled user study to evaluate Talk2Data's effectiveness and usefulness.

Benjamin Gravell, Yi Guo, Tyler Summers

We give algorithms for designing near-optimal sparse controllers using policy gradient with applications to control of systems corrupted by multiplicative noise, which is increasingly important in emerging complex dynamical networks. Various regularization schemes are examined and incorporated into the optimization by the use of gradient, subgradient, and proximal gradient methods. Numerical experiments on a large networked system show that the algorithms converge to performant sparse mean-square stabilizing controllers.

Zhuo Chen, Chao Jiang, Yi Guo

The study of human-robot interaction (HRI) has received increasing research attention for robot navigation in pedestrian crowds. In this paper, we present empirical study of pedestrian-robot interaction in an uni-directional exit corridor. We deploy a mobile robot moving in a direction perpendicular to that of the pedestrian flow, and install a pedestrian motion tracking system to record the collective motion. We analyze both individual and collective motion of pedestrians, and measure the effect of the robot motion on the overall pedestrian flow. The experimental results show the effect of passive HRI, where the pedestrians' overall speed is slowed down in the presence of the robot, and the faster the robot moves, the lower the average pedestrian velocity becomes. Experiment results show qualitative consistency of the collective HRI effect with simulation results that was previously reported. The study can be used to guide future design of robot-assisted pedestrian evacuation algorithms.

Bo Tang, Chao Jiang, Haibo He et al.

Understanding human mobility is important for the development of intelligent mobile service robots as it can provide prior knowledge and predictions of human distribution for robot-assisted activities. In this paper, we propose a probabilistic method to model human motion behaviors which is determined by both internal and external factors in an indoor environment. While the internal factors are represented by the individual preferences, aims and interests, the external factors are indicated by the stimulation of the environment. We model the randomness of human macro-level movement, e.g., the probability of visiting a specific place and staying time, under the Bayesian framework, considering the influence of both internal and external variables. We use two case studies in a shopping mall and in a college student dorm building to show the effectiveness of our proposed probabilistic human mobility model. Real surveillance camera data are used to validate the proposed model together with survey data in the case study of student dorm.