Shang Gao

Jinyu Yang, Mingqi Gao, Zhe Li et al.

Recently, the Segment Anything Model (SAM) gains lots of attention rapidly due to its impressive segmentation performance on images. Regarding its strong ability on image segmentation and high interactivity with different prompts, we found that it performs poorly on consistent segmentation in videos. Therefore, in this report, we propose Track Anything Model (TAM), which achieves high-performance interactive tracking and segmentation in videos. To be detailed, given a video sequence, only with very little human participation, i.e., several clicks, people can track anything they are interested in, and get satisfactory results in one-pass inference. Without additional training, such an interactive design performs impressively on video object tracking and segmentation. All resources are available on {https://github.com/gaomingqi/Track-Anything}. We hope this work can facilitate related research.

Neel Guha, Julian Nyarko, Daniel E. Ho et al.

The advent of large language models (LLMs) and their adoption by the legal community has given rise to the question: what types of legal reasoning can LLMs perform? To enable greater study of this question, we present LegalBench: a collaboratively constructed legal reasoning benchmark consisting of 162 tasks covering six different types of legal reasoning. LegalBench was built through an interdisciplinary process, in which we collected tasks designed and hand-crafted by legal professionals. Because these subject matter experts took a leading role in construction, tasks either measure legal reasoning capabilities that are practically useful, or measure reasoning skills that lawyers find interesting. To enable cross-disciplinary conversations about LLMs in the law, we additionally show how popular legal frameworks for describing legal reasoning -- which distinguish between its many forms -- correspond to LegalBench tasks, thus giving lawyers and LLM developers a common vocabulary. This paper describes LegalBench, presents an empirical evaluation of 20 open-source and commercial LLMs, and illustrates the types of research explorations LegalBench enables.

Jilan Xu, Junlin Hou, Yuejie Zhang et al.

Weakly Supervised Object Localization (WSOL) aims to localize objects with image-level supervision. Existing works mainly rely on Class Activation Mapping (CAM) derived from a classification model. However, CAM-based methods usually focus on the most discriminative parts of an object (i.e., incomplete localization problem). In this paper, we empirically prove that this problem is associated with the mixup of the activation values between less discriminative foreground regions and the background. To address it, we propose Class RE-Activation Mapping (CREAM), a novel clustering-based approach to boost the activation values of the integral object regions. To this end, we introduce class-specific foreground and background context embeddings as cluster centroids. A CAM-guided momentum preservation strategy is developed to learn the context embeddings during training. At the inference stage, the re-activation mapping is formulated as a parameter estimation problem under Gaussian Mixture Model, which can be solved by deriving an unsupervised Expectation-Maximization based soft-clustering algorithm. By simply integrating CREAM into various WSOL approaches, our method significantly improves their performance. CREAM achieves the state-of-the-art performance on CUB, ILSVRC and OpenImages benchmark datasets. Code will be available at https://github.com/Jazzcharles/CREAM.

I Putu Adi Pratama, Bahadorreza Ofoghi, Atul Sajjanhar et al.

Medical visual question answering (Med-VQA) has strong potential for clinical decision support by enabling AI models to interpret medical images and answer clinically relevant queries. Recent approaches typically connect off-the-shelf vision encoders with large language models (LLMs) through lightweight mapping networks to reduce computational cost. However, these methods often overlook the importance of handling noise and small irrelevant changes in visual representations. To address these challenges, we propose a noise-aware Med-VQA framework that incorporates a denoising autoencoder before visual embeddings are mapped into the input space of an LLM. The denoising autoencoder is pretrained to reconstruct clean visual embeddings from corrupted inputs, encouraging the model to learn robust visual representations that are less sensitive to noise. The resulting embeddings are then projected into the language model embedding space using a multi-layer perceptron (MLP), forming visual prefix tokens that provide image information to the LLM. To enable efficient adaptation without full retraining, we employ parameter-efficient fine-tuning using low-rank adaptation (LoRA). The proposed method is evaluated on the SLAKE and PathVQA benchmarks. Experimental results show improved robustness to noisy input embeddings while maintaining competitive clean performance across multiple evaluation criteria. These findings suggest that learning more robust visual representations can enhance Med-VQA performance and robustness.

Xinzhe Li, Ming Liu, Shang Gao

This paper addresses the ethical concerns arising from the use of unauthorized public data in deep learning models and proposes a novel solution. Specifically, building on the work of Huang et al. (2021), we extend their bi-level optimization approach to generate unlearnable text using a gradient-based search technique. However, although effective, this approach faces practical limitations, including the requirement of batches of instances and model architecture knowledge that is not readily accessible to ordinary users with limited access to their own data. Furthermore, even with semantic-preserving constraints, unlearnable noise can alter the text's semantics. To address these challenges, we extract simple patterns from unlearnable text produced by bi-level optimization and demonstrate that the data remains unlearnable for unknown models. Additionally, these patterns are not instance- or dataset-specific, allowing users to readily apply them to text classification and question-answering tasks, even if only a small proportion of users implement them on their public content. We also open-source codes to generate unlearnable text and assess unlearnable noise to benefit the public and future studies.

Shang Gao, Jinyu Yang, Zhe Li et al.

With the development of depth sensors in recent years, RGBD object tracking has received significant attention. Compared with the traditional RGB object tracking, the addition of the depth modality can effectively solve the target and background interference. However, some existing RGBD trackers use the two modalities separately and thus some particularly useful shared information between them is ignored. On the other hand, some methods attempt to fuse the two modalities by treating them equally, resulting in the missing of modality-specific features. To tackle these limitations, we propose a novel Dual-fused Modality-aware Tracker (termed DMTracker) which aims to learn informative and discriminative representations of the target objects for robust RGBD tracking. The first fusion module focuses on extracting the shared information between modalities based on cross-modal attention. The second aims at integrating the RGB-specific and depth-specific information to enhance the fused features. By fusing both the modality-shared and modality-specific information in a modality-aware scheme, our DMTracker can learn discriminative representations in complex tracking scenes. Experiments show that our proposed tracker achieves very promising results on challenging RGBD benchmarks.

Xinzhe Li, Ming Liu, Shang Gao et al.

Adversarial robustness, domain generalization and dataset biases are three active lines of research contributing to out-of-distribution (OOD) evaluation on neural NLP models. However, a comprehensive, integrated discussion of the three research lines is still lacking in the literature. In this survey, we 1) compare the three lines of research under a unifying definition; 2) summarize the data-generating processes and evaluation protocols for each line of research; and 3) emphasize the challenges and opportunities for future work.

Salma Gonzalez-Sabbagh, Antonio Robles-Kelly, Shang Gao

Underwater images are usually covered with a blue-greenish colour cast, making them distorted, blurry or low in contrast. This phenomenon occurs due to the light attenuation given by the scattering and absorption in the water column. In this paper, we present an image enhancement approach for dewatering which employs a conditional generative adversarial network (cGAN) with two generators. Our Dual Generator Dewatering cGAN (DGD-cGAN) removes the haze and colour cast induced by the water column and restores the true colours of underwater scenes whereby the effects of various attenuation and scattering phenomena that occur in underwater images are tackled by the two generators. The first generator takes at input the underwater image and predicts the dewatered scene, while the second generator learns the underwater image formation process by implementing a custom loss function based upon the transmission and the veiling light components of the image formation model. Our experiments show that DGD-cGAN consistently delivers a margin of improvement as compared with the state-of-the-art methods on several widely available datasets.

Yang Yi, Xuequan Lu, Shang Gao et al.

Spectral graph convolutional neural networks (GCNNs) have been producing encouraging results in graph classification tasks. However, most spectral GCNNs utilize fixed graphs when aggregating node features, while omitting edge feature learning and failing to get an optimal graph structure. Moreover, many existing graph datasets do not provide initialized edge features, further restraining the ability of learning edge features via spectral GCNNs. In this paper, we try to address this issue by designing an edge feature scheme and an add-on layer between every two stacked graph convolution layers in GCNN. Both are lightweight while effective in filling the gap between edge feature learning and performance enhancement of graph classification. The edge feature scheme makes edge features adapt to node representations at different graph convolution layers. The add-on layers help adjust the edge features to an optimal graph structure. To test the effectiveness of our method, we take Euclidean positions as initial node features and extract graphs with semantic information from point cloud objects. The node features of our extracted graphs are more scalable for edge feature learning than most existing graph datasets (in one-hot encoded label format). Three new graph datasets are constructed based on ModelNet40, ModelNet10 and ShapeNet Part datasets. Experimental results show that our method outperforms state-of-the-art graph classification methods on the new datasets by reaching 96.56% overall accuracy on Graph-ModelNet40, 98.79% on Graph-ModelNet10 and 97.91% on Graph-ShapeNet Part. The constructed graph datasets will be released to the community.

Feisha Hu, Qi Wang, Haijian Shao et al.

Unmanned Aerial Vehicles (UAVs) are widely used and meet many demands in military and civilian fields. With the continuous enrichment and extensive expansion of application scenarios, the safety of UAVs is constantly being challenged. To address this challenge, we propose algorithms to detect anomalous data collected from drones to improve drone safety. We deployed a one-class kernel extreme learning machine (OCKELM) to detect anomalies in drone data. By default, OCKELM uses the radial basis (RBF) kernel function as the kernel function of the model. To improve the performance of OCKELM, we choose a Triangular Global Alignment Kernel (TGAK) instead of an RBF Kernel and introduce the Fast Independent Component Analysis (FastICA) algorithm to reconstruct UAV data. Based on the above improvements, we create a novel anomaly detection strategy FastICA-TGAK-OCELM. The method is finally validated on the UCI dataset and detected on the Aeronautical Laboratory Failures and Anomalies (ALFA) dataset. The experimental results show that compared with other methods, the accuracy of this method is improved by more than 30%, and point anomalies are effectively detected.

Xinzhe Li, Ming Liu, Shang Gao

For Pretrained Language Models (PLMs), their susceptibility to noise has recently been linked to subword segmentation. However, it is unclear which aspects of segmentation affect their understanding. This study assesses the robustness of PLMs against various disrupted segmentation caused by noise. An evaluation framework for subword segmentation, named Contrastive Lexical Semantic (CoLeS) probe, is proposed. It provides a systematic categorization of segmentation corruption under noise and evaluation protocols by generating contrastive datasets with canonical-noisy word pairs. Experimental results indicate that PLMs are unable to accurately compute word meanings if the noise introduces completely different subwords, small subword fragments, or a large number of additional subwords, particularly when they are inserted within other subwords.

Qingqiu Li, Jilan Xu, Runtian Yuan et al.

Automatic generation of radiology reports holds crucial clinical value, as it can alleviate substantial workload on radiologists and remind less experienced ones of potential anomalies. Despite the remarkable performance of various image captioning methods in the natural image field, generating accurate reports for medical images still faces challenges, i.e., disparities in visual and textual data, and lack of accurate domain knowledge. To address these issues, we propose an enhanced knowledge injection framework, which utilizes two branches to extract different types of knowledge. The Weighted Concept Knowledge (WCK) branch is responsible for introducing clinical medical concepts weighted by TF-IDF scores. The Multimodal Retrieval Knowledge (MRK) branch extracts triplets from similar reports, emphasizing crucial clinical information related to entity positions and existence. By integrating this finer-grained and well-structured knowledge with the current image, we are able to leverage the multi-source knowledge gain to ultimately facilitate more accurate report generation. Extensive experiments have been conducted on two public benchmarks, demonstrating that our method achieves superior performance over other state-of-the-art methods. Ablation studies further validate the effectiveness of two extracted knowledge sources.

Yun Hua, Shang Gao, Wenhao Li et al.

In multi-agent reinforcement learning, each agent acts to maximize its individual accumulated rewards. Nevertheless, individual accumulated rewards could not fully reflect how others perceive them, resulting in selfish behaviors that undermine global performance. The externality theory, defined as ``the activities of one economic actor affect the activities of another in ways that are not reflected in market transactions,'' is applicable to analyze the social dilemmas in MARL. One of its most profound non-market solutions, ``Pigovian Tax'', which internalizes externalities by taxing those who create negative externalities and subsidizing those who create positive externalities, could aid in developing a mechanism to resolve MARL's social dilemmas. The purpose of this paper is to apply externality theory to analyze social dilemmas in MARL. To internalize the externalities in MARL, the \textbf{L}earning \textbf{O}ptimal \textbf{P}igovian \textbf{T}ax method (LOPT), is proposed, where an additional agent is introduced to learn the tax/allowance allocation policy so as to approximate the optimal ``Pigovian Tax'' which accurately reflects the externalities for all agents. Furthermore, a reward shaping mechanism based on the approximated optimal ``Pigovian Tax'' is applied to reduce the social cost of each agent and tries to alleviate the social dilemmas. Compared with existing state-of-the-art methods, the proposed LOPT leads to higher collective social welfare in both the Escape Room and the Cleanup environments, which shows the superiority of our method in solving social dilemmas.

Stella Ho, Ming Liu, Shang Gao et al.

Continual learning strives to ensure stability in solving previously seen tasks while demonstrating plasticity in a novel domain. Recent advances in continual learning are mostly confined to a supervised learning setting, especially in NLP domain. In this work, we consider a few-shot continual active learning setting where labeled data are inadequate, and unlabeled data are abundant but with a limited annotation budget. We exploit meta-learning and propose a method, called Meta-Continual Active Learning. This method sequentially queries the most informative examples from a pool of unlabeled data for annotation to enhance task-specific performance and tackle continual learning problems through meta-objective. Specifically, we employ meta-learning and experience replay to address inter-task confusion and catastrophic forgetting. We further incorporate textual augmentations to avoid memory over-fitting caused by experience replay and sample queries, thereby ensuring generalization. We conduct extensive experiments on benchmark text classification datasets from diverse domains to validate the feasibility and effectiveness of meta-continual active learning. We also analyze the impact of different active learning strategies on various meta continual learning models. The experimental results demonstrate that introducing randomness into sample selection is the best default strategy for maintaining generalization in meta-continual learning framework.

Haiwen Diao, Ying Zhang, Shang Gao et al.

Cross-modal metric learning is a prominent research topic that bridges the semantic heterogeneity between vision and language. Existing methods frequently utilize simple cosine or complex distance metrics to transform the pairwise features into a similarity score, which suffers from an inadequate or inefficient capability for distance measurements. Consequently, we propose a Generalized Structural Sparse Function to dynamically capture thorough and powerful relationships across modalities for pair-wise similarity learning while remaining concise but efficient. Specifically, the distance metric delicately encapsulates two formats of diagonal and block-diagonal terms, automatically distinguishing and highlighting the cross-channel relevancy and dependency inside a structured and organized topology. Hence, it thereby empowers itself to adapt to the optimal matching patterns between the paired features and reaches a sweet spot between model complexity and capability. Extensive experiments on cross-modal and two extra uni-modal retrieval tasks (image-text retrieval, person re-identification, fine-grained image retrieval) have validated its superiority and flexibility over various popular retrieval frameworks. More importantly, we further discover that it can be seamlessly incorporated into multiple application scenarios, and demonstrates promising prospects from Attention Mechanism to Knowledge Distillation in a plug-and-play manner. Our code is publicly available at: https://github.com/Paranioar/GSSF.

Shang Gao, Chenyang Yu, Pingping Zhang et al.

Occluded person re-identification (ReID) is a very challenging task due to the occlusion disturbance and incomplete target information. Leveraging external cues such as human pose or parsing to locate and align part features has been proven to be very effective in occluded person ReID. Meanwhile, recent Transformer structures have a strong ability of long-range modeling. Considering the above facts, we propose a Teacher-Student Decoder (TSD) framework for occluded person ReID, which utilizes the Transformer decoder with the help of human parsing. More specifically, our proposed TSD consists of a Parsing-aware Teacher Decoder (PTD) and a Standard Student Decoder (SSD). PTD employs human parsing cues to restrict Transformer's attention and imparts this information to SSD through feature distillation. Thereby, SSD can learn from PTD to aggregate information of body parts automatically. Moreover, a mask generator is designed to provide discriminative regions for better ReID. In addition, existing occluded person ReID benchmarks utilize occluded samples as queries, which will amplify the role of alleviating occlusion interference and underestimate the impact of the feature absence issue. Contrastively, we propose a new benchmark with non-occluded queries, serving as a complement to the existing benchmark. Extensive experiments demonstrate that our proposed method is superior and the new benchmark is essential. The source codes are available at https://github.com/hh23333/TSD.

Haiwen Diao, Ying Zhang, Shang Gao et al.

Image-text matching remains a challenging task due to heterogeneous semantic diversity across modalities and insufficient distance separability within triplets. Different from previous approaches focusing on enhancing multi-modal representations or exploiting cross-modal correspondence for more accurate retrieval, in this paper we aim to leverage the knowledge transfer between peer branches in a boosting manner to seek a more powerful matching model. Specifically, we propose a brand-new Deep Boosting Learning (DBL) algorithm, where an anchor branch is first trained to provide insights into the data properties, with a target branch gaining more advanced knowledge to develop optimal features and distance metrics. Concretely, an anchor branch initially learns the absolute or relative distance between positive and negative pairs, providing a foundational understanding of the particular network and data distribution. Building upon this knowledge, a target branch is concurrently tasked with more adaptive margin constraints to further enlarge the relative distance between matched and unmatched samples. Extensive experiments validate that our DBL can achieve impressive and consistent improvements based on various recent state-of-the-art models in the image-text matching field, and outperform related popular cooperative strategies, e.g., Conventional Distillation, Mutual Learning, and Contrastive Learning. Beyond the above, we confirm that DBL can be seamlessly integrated into their training scenarios and achieve superior performance under the same computational costs, demonstrating the flexibility and broad applicability of our proposed method. Our code is publicly available at: https://github.com/Paranioar/DBL.

Yue Zhu, Haiwen Diao, Shang Gao et al.

Fine-tuning pre-trained vision models for specific tasks is a common practice in computer vision. However, this process becomes more expensive as models grow larger. Recently, parameter-efficient fine-tuning (PEFT) methods have emerged as a popular solution to improve training efficiency and reduce storage needs by tuning additional low-rank modules within pre-trained backbones. Despite their advantages, they struggle with limited representation capabilities and misalignment with pre-trained intermediate features. To address these issues, we introduce an innovative Multi-Kernel Kronecker Adaptation with Re-Scaling Transmission (KARST) for various recognition tasks. Specifically, its multi-kernel design extends Kronecker projections horizontally and separates adaptation matrices into multiple complementary spaces, reducing parameter dependency and creating more compact subspaces. Besides, it incorporates extra learnable re-scaling factors to better align with pre-trained feature distributions, allowing for more flexible and balanced feature aggregation. Extensive experiments validate that our KARST outperforms other PEFT counterparts with a negligible inference cost due to its re-parameterization characteristics. Code is publicly available at: https://github.com/Lucenova/KARST.

Kaishen Yuan, Yuting Zhang, Shang Gao et al.

Emotional Image Content Generation (EICG) aims to generate semantically clear and emotionally faithful images based on given emotion categories, with broad application prospects. While recent text-to-image diffusion models excel at generating concrete concepts, they struggle with the complexity of abstract emotions. There have also emerged methods specifically designed for EICG, but they excessively rely on word-level attribute labels for guidance, which suffer from semantic incoherence, ambiguity, and limited scalability. To address these challenges, we propose CoEmoGen, a novel pipeline notable for its semantic coherence and high scalability. Specifically, leveraging multimodal large language models (MLLMs), we construct high-quality captions focused on emotion-triggering content for context-rich semantic guidance. Furthermore, inspired by psychological insights, we design a Hierarchical Low-Rank Adaptation (HiLoRA) module to cohesively model both polarity-shared low-level features and emotion-specific high-level semantics. Extensive experiments demonstrate CoEmoGen's superiority in emotional faithfulness and semantic coherence from quantitative, qualitative, and user study perspectives. To intuitively showcase scalability, we curate EmoArt, a large-scale dataset of emotionally evocative artistic images, providing endless inspiration for emotion-driven artistic creation. The dataset and code are available at https://github.com/yuankaishen2001/CoEmoGen.

Yue Zhu, Haiwen Diao, Shang Gao et al.

Low-Rank Adaptation (LoRA) and its variants have delivered strong capability in Parameter-Efficient Transfer Learning (PETL) by minimizing trainable parameters and benefiting from reparameterization. However, their projection matrices remain unrestricted during training, causing high representation redundancy and diminishing the effectiveness of feature adaptation in the resulting subspaces. While existing methods mitigate this by manually adjusting the rank or implicitly applying channel-wise masks, they lack flexibility and generalize poorly across various datasets and architectures. Hence, we propose ReSoRA, a method that explicitly models redundancy between mapping subspaces and adaptively Regularizes Subspace redundancy of Low-Rank Adaptation. Specifically, it theoretically decomposes the low-rank submatrices into multiple equivalent subspaces and systematically applies de-redundancy constraints to the feature distributions across different projections. Extensive experiments validate that our proposed method consistently facilitates existing state-of-the-art PETL methods across various backbones and datasets in vision-language retrieval and standard visual classification benchmarks. Besides, as a training supervision, ReSoRA can be seamlessly integrated into existing approaches in a plug-and-play manner, with no additional inference costs. Code is publicly available at: https://github.com/Lucenova/ReSoRA.

Ling Zhou, Runtian Yuan, Yi Liu et al.

Ultrasound imaging is a prevalent diagnostic tool known for its simplicity and non-invasiveness. However, its inherent characteristics often introduce substantial noise, posing considerable challenges for automated lesion or organ segmentation in ultrasound video sequences. To address these limitations, we propose the Dual Semantic-Aware Network (DSANet), a novel framework designed to enhance noise robustness in ultrasound video segmentation by fostering mutual semantic awareness between local and global features. Specifically, we introduce an Adjacent-Frame Semantic-Aware (AFSA) module, which constructs a channel-wise similarity matrix to guide feature fusion across adjacent frames, effectively mitigating the impact of random noise without relying on pixel-level relationships. Additionally, we propose a Local-and-Global Semantic-Aware (LGSA) module that reorganizes and fuses temporal unconditional local features, which capture spatial details independently at each frame, with conditional global features that incorporate temporal context from adjacent frames. This integration facilitates multi-level semantic representation, significantly improving the model's resilience to noise interference. Extensive evaluations on four benchmark datasets demonstrate that DSANet substantially outperforms state-of-the-art methods in segmentation accuracy. Moreover, since our model avoids pixel-level feature dependencies, it achieves significantly higher inference FPS than video-based methods, and even surpasses some image-based models. Code can be found in \href{https://github.com/ZhouL2001/DSANet}{DSANet}

Xinzhe Li, Ming Liu, Shang Gao

Retrieval-Augmented Generation (RAG) systems are widely used across various industries for querying closed-domain and in-house knowledge bases. However, evaluating these systems presents significant challenges due to the private nature of closed-domain data and a scarcity of queries with verifiable ground truths. Moreover, there is a lack of analytical methods to diagnose problematic modules and identify types of failure, such as those caused by knowledge deficits or issues with robustness. To address these challenges, we introduce GRAMMAR (GRounded And Modular Methodology for Assessment of RAG), an evaluation framework comprising a grounded data generation process and an evaluation protocol that effectively pinpoints defective modules. Our validation experiments reveal that GRAMMAR provides a reliable approach for identifying vulnerable modules and supports hypothesis testing for textual form vulnerabilities. An open-source tool accompanying this framework is available in our GitHub repository (see https://github.com/xinzhel/grammar), allowing for easy reproduction of our results and enabling reliable and modular evaluation in closed-domain settings.

Shang Gao, Jingya Wang, Huchuan Lu et al.

Occluded person re-identification is a challenging task as the appearance varies substantially with various obstacles, especially in the crowd scenario. To address this issue, we propose a Pose-guided Visible Part Matching (PVPM) method that jointly learns the discriminative features with pose-guided attention and self-mines the part visibility in an end-to-end framework. Specifically, the proposed PVPM includes two key components: 1) pose-guided attention (PGA) method for part feature pooling that exploits more discriminative local features; 2) pose-guided visibility predictor (PVP) that estimates whether a part suffers the occlusion or not. As there are no ground truth training annotations for the occluded part, we turn to utilize the characteristic of part correspondence in positive pairs and self-mining the correspondence scores via graph matching. The generated correspondence scores are then utilized as pseudo-labels for visibility predictor (PVP). Experimental results on three reported occluded benchmarks show that the proposed method achieves competitive performance to state-of-the-art methods. The source codes are available at https://github.com/hh23333/PVPM

Salma Gonzalez-Sabbagh, Antonio Robles-Kelly, Shang Gao

Recovering the in-air colours of seafloor from satellite imagery is a challenging task due to the exponential attenuation of light with depth in the water column. In this study, we present DichroGAN, a conditional generative adversarial network (cGAN) designed for this purpose. DichroGAN employs a two-steps simultaneous training: first, two generators utilise a hyperspectral image cube to estimate diffuse and specular reflections, thereby obtaining atmospheric scene radiance. Next, a third generator receives as input the generated scene radiance containing the features of each spectral band, while a fourth generator estimates the underwater light transmission. These generators work together to remove the effects of light absorption and scattering, restoring the in-air colours of seafloor based on the underwater image formation equation. DichroGAN is trained on a compact dataset derived from PRISMA satellite imagery, comprising RGB images paired with their corresponding spectral bands and masks. Extensive experiments on both satellite and underwater datasets demonstrate that DichroGAN achieves competitive performance compared to state-of-the-art underwater restoration techniques.

John Scoville, Shang Gao, Devanshu Agrawal et al.

We introduce a group of related methods for binary classification tasks using probes of the hidden state activations in large language models (LLMs). Performance is on par with the largest and most advanced LLMs currently available, but requiring orders of magnitude fewer computational resources and not requiring labeled data. This approach involves translating class labels into a semantically rich description, spontaneous symmetry breaking of multilayer perceptron probes for unsupervised learning and inference, training probes to generate confidence scores (prior probabilities) from hidden state activations subject to known constraints via entropy maximization, and selecting the most confident probe model from an ensemble for prediction. These techniques are evaluated on four datasets using five base LLMs.

Devanshu Agrawal, Shang Gao, Martin Gajek

Long-context large language models (LLMs) hold promise for tasks such as question-answering (QA) over long documents, but they tend to miss important information in the middle of context documents (arXiv:2307.03172v3). Here, we introduce $\textit{R&R}$ -- a combination of two novel prompt-based methods called $\textit{reprompting}$ and $\textit{in-context retrieval}$ (ICR) -- to alleviate this effect in document-based QA. In reprompting, we repeat the prompt instructions periodically throughout the context document to remind the LLM of its original task. In ICR, rather than instructing the LLM to answer the question directly, we instruct it to retrieve the top $k$ passage numbers most relevant to the given question, which are then used as an abbreviated context in a second QA prompt. We test R&R with GPT-4 Turbo and Claude-2.1 on documents up to 80k tokens in length and observe a 16-point boost in QA accuracy on average. Our further analysis suggests that R&R improves performance on long document-based QA because it reduces the distance between relevant context and the instructions. Finally, we show that compared to short-context chunkwise methods, R&R enables the use of larger chunks that cost fewer LLM calls and output tokens, while minimizing the drop in accuracy.

Wei Ruan, Yanjun Lyu, Jing Zhang et al.

With the rapid advancements in large language model (LLM) technology and the emergence of bioinformatics-specific language models (BioLMs), there is a growing need for a comprehensive analysis of the current landscape, computational characteristics, and diverse applications. This survey aims to address this need by providing a thorough review of BioLMs, focusing on their evolution, classification, and distinguishing features, alongside a detailed examination of training methodologies, datasets, and evaluation frameworks. We explore the wide-ranging applications of BioLMs in critical areas such as disease diagnosis, drug discovery, and vaccine development, highlighting their impact and transformative potential in bioinformatics. We identify key challenges and limitations inherent in BioLMs, including data privacy and security concerns, interpretability issues, biases in training data and model outputs, and domain adaptation complexities. Finally, we highlight emerging trends and future directions, offering valuable insights to guide researchers and clinicians toward advancing BioLMs for increasingly sophisticated biological and clinical applications.

Fenghua Shao, Tong Zhang, Shang Gao et al.

This study mainly explores the application of natural gesture recognition based on computer vision in human-computer interaction, aiming to improve the fluency and naturalness of human-computer interaction through gesture recognition technology. In the fields of virtual reality, augmented reality and smart home, traditional input methods have gradually failed to meet the needs of users for interactive experience. As an intuitive and convenient interaction method, gestures have received more and more attention. This paper proposes a gesture recognition method based on a three-dimensional hand skeleton model. By simulating the three-dimensional spatial distribution of hand joints, a simplified hand skeleton structure is constructed. By connecting the palm and each finger joint, a dynamic and static gesture model of the hand is formed, which further improves the accuracy and efficiency of gesture recognition. Experimental results show that this method can effectively recognize various gestures and maintain high recognition accuracy and real-time response capabilities in different environments. In addition, combined with multimodal technologies such as eye tracking, the intelligence level of the gesture recognition system can be further improved, bringing a richer and more intuitive user experience. In the future, with the continuous development of computer vision, deep learning and multimodal interaction technology, natural interaction based on gestures will play an important role in a wider range of application scenarios and promote revolutionary progress in human-computer interaction.

Fangzhou Lin, Songlin Hou, Haotian Liu et al.

Chamfer Distance (CD) is widely used as a metric to quantify difference between two point clouds. In point cloud completion, Chamfer Distance (CD) is typically used as a loss function in deep learning frameworks. However, it is generally acknowledged within the field that Chamfer Distance (CD) is vulnerable to the presence of outliers, which can consequently lead to the convergence on suboptimal models. In divergence from the existing literature, which largely concentrates on resolving such concerns in the realm of Euclidean space, we put forth a notably uncomplicated yet potent metric specifically designed for point cloud completion tasks: {Hyperbolic Chamfer Distance (HyperCD)}. This metric conducts Chamfer Distance computations within the parameters of hyperbolic space. During the backpropagation process, HyperCD systematically allocates greater weight to matched point pairs exhibiting reduced Euclidean distances. This mechanism facilitates the preservation of accurate point pair matches while permitting the incremental adjustment of suboptimal matches, thereby contributing to enhanced point cloud completion outcomes. Moreover, measure the shape dissimilarity is not solely work for point cloud completion task, we further explore its applications in other generative related tasks, including single image reconstruction from point cloud, and upsampling. We demonstrate state-of-the-art performance on the point cloud completion benchmark datasets, PCN, ShapeNet-55, and ShapeNet-34, and show from visualization that HyperCD can significantly improve the surface smoothness, we also provide the provide experimental results beyond completion task.

Runwei Guan, Ningwei Ouyang, Tianhao Xu et al.

Automated waterway environment perception is crucial for enabling unmanned surface vessels (USVs) to understand their surroundings and make informed decisions. Most existing waterway perception models primarily focus on instance-level object perception paradigms (e.g., detection, segmentation). However, due to the complexity of waterway environments, current perception datasets and models fail to achieve global semantic understanding of waterways, limiting large-scale monitoring and structured log generation. With the advancement of vision-language models (VLMs), we leverage image captioning to introduce WaterCaption, the first captioning dataset specifically designed for waterway environments. WaterCaption focuses on fine-grained, multi-region long-text descriptions, providing a new research direction for visual geo-understanding and spatial scene cognition. Exactly, it includes 20.2k image-text pair data with 1.8 million vocabulary size. Additionally, we propose Da Yu, an edge-deployable multi-modal large language model for USVs, where we propose a novel vision-to-language projector called Nano Transformer Adaptor (NTA). NTA effectively balances computational efficiency with the capacity for both global and fine-grained local modeling of visual features, thereby significantly enhancing the model's ability to generate long-form textual outputs. Da Yu achieves an optimal balance between performance and efficiency, surpassing state-of-the-art models on WaterCaption and several other captioning benchmarks.

Runtian Yuan, Mohan Chen, Jilan Xu et al.

Referring Medical Image Sequence Segmentation (Ref-MISS) is a novel and challenging task that aims to segment anatomical structures in medical image sequences (\emph{e.g.} endoscopy, ultrasound, CT, and MRI) based on natural language descriptions. This task holds significant clinical potential and offers a user-friendly advancement in medical imaging interpretation. Existing 2D and 3D segmentation models struggle to explicitly track objects of interest across medical image sequences, and lack support for nteractive, text-driven guidance. To address these limitations, we propose Text-Promptable Propagation (TPP), a model designed for referring medical image sequence segmentation. TPP captures the intrinsic relationships among sequential images along with their associated textual descriptions. Specifically, it enables the recognition of referred objects through cross-modal referring interaction, and maintains continuous tracking across the sequence via Transformer-based triple propagation, using text embeddings as queries. To support this task, we curate a large-scale benchmark, Ref-MISS-Bench, which covers 4 imaging modalities and 20 different organs and lesions. Experimental results on this benchmark demonstrate that TPP consistently outperforms state-of-the-art methods in both medical segmentation and referring video object segmentation.

Charles Godfrey, Ping Nie, Natalia Ostapuk et al.

Large language models (LLMs) obtain state of the art zero shot relevance ranking performance on a variety of information retrieval tasks. The two most common prompts to elicit LLM relevance judgments are pointwise scoring (a.k.a. relevance generation), where the LLM sees a single query-document pair and outputs a single relevance score, and listwise ranking (a.k.a. permutation generation), where the LLM sees a query and a list of documents and outputs a permutation, sorting the documents in decreasing order of relevance. The current research community consensus is that listwise ranking yields superior performance, and significant research effort has been devoted to crafting LLM listwise ranking algorithms. The underlying hypothesis is that LLMs are better at making relative relevance judgments than absolute ones. In tension with this hypothesis, we find that the gap between pointwise scoring and listwise ranking shrinks when pointwise scoring is implemented using a sufficiently large ordinal relevance label space, becoming statistically insignificant for many LLM-benchmark dataset combinations (where ``significant'' means ``95\% confidence that listwise ranking improves NDCG@10''). Our evaluations span four LLMs, eight benchmark datasets from the BEIR and TREC-DL suites, and two proprietary datasets with relevance labels collected after the training cut-off of all LLMs evaluated.

Zhengyang Ji, Shang Gao, Li Liu et al.

Biomedical visual question answering (VQA) has been widely studied and has demonstrated significant application value and potential in fields such as assistive medical diagnosis. Despite their success, current biomedical VQA models perform multimodal information interaction only at the model level within large language models (LLMs), leading to suboptimal multimodal semantic alignment when dealing with complex tasks. To address this issue, we propose BioD2C: a novel Dual-level Semantic Consistency Constraint Framework for Biomedical VQA, which achieves dual-level semantic interaction alignment at both the model and feature levels, enabling the model to adaptively learn visual features based on the question. Specifically, we firstly integrate textual features into visual features via an image-text fusion mechanism as feature-level semantic interaction, obtaining visual features conditioned on the given text; and then introduce a text-queue-based cross-modal soft semantic loss function to further align the image semantics with the question semantics. Specifically, in this work, we establish a new dataset, BioVGQ, to address inherent biases in prior datasets by filtering manually-altered images and aligning question-answer pairs with multimodal context, and train our model on this dataset. Extensive experimental results demonstrate that BioD2C achieves state-of-the-art (SOTA) performance across multiple downstream datasets, showcasing its robustness, generalizability, and potential to advance biomedical VQA research.

Fangzhou Lin, Shang Gao, Yichuan Tang et al.

Spectroscopic photoacoustic (sPA) imaging uses multiple wavelengths to differentiate chromophores based on their unique optical absorption spectra. This technique has been widely applied in areas such as vascular mapping, tumor detection, and therapeutic monitoring. However, sPA imaging is highly susceptible to noise, leading to poor signal-to-noise ratio (SNR) and compromised image quality. Traditional denoising techniques like frame averaging, though effective in improving SNR, can be impractical for dynamic imaging scenarios due to reduced frame rates. Advanced methods, including learning-based approaches and analytical algorithms, have demonstrated promise but often require extensive training data and parameter tuning, limiting their adaptability for real-time clinical use. In this work, we propose a sPA denoising using a tuning-free analytical and data-free enhancement (SPADE) framework for denoising sPA images. This framework integrates a data-free learning-based method with an efficient BM3D-based analytical approach while preserves spectral linearity, providing noise reduction and ensuring that functional information is maintained. The SPADE framework was validated through simulation, phantom, ex vivo, and in vivo experiments. Results demonstrated that SPADE improved SNR and preserved spectral information, outperforming conventional methods, especially in challenging imaging conditions. SPADE presents a promising solution for enhancing sPA imaging quality in clinical applications where noise reduction and spectral preservation are critical.

Jun Ding, Shang Gao

Accurate segmentation of heterogeneous anatomical structures is pivotal for computer-aided diagnosis and subsequent clinical decision-making. Although U-Net based convolutional neural networks have achieved remarkable progress, their intrinsic locality and largely homogeneous attention formulations often limit the modeling of long-range contextual dependencies, especially in multi-organ scenarios and low-contrast regions. Transformer-based architectures mitigate this issue by leveraging global self-attention, but they usually require higher computational resources and larger training data, which may impede deployment in resource-constrained clinical environments.In this paper, we propose GCA-ResUNet, an efficient medical image segmentation framework equipped with a lightweight and plug-and-play Grouped Coordinate Attention (GCA) module. The proposed GCA decouples channel-wise context modeling into multiple groups to explicitly account for semantic heterogeneity across channels, and integrates direction-aware coordinate encoding to capture structured spatial dependencies along horizontal and vertical axes. This design enhances global representation capability while preserving the efficiency advantages of CNN backbones. Extensive experiments on two widely used benchmarks, Synapse and ACDC, demonstrate that GCA-ResUNet achieves Dice scores of 86.11% and 92.64%, respectively, outperforming a range of representative CNN and Transformer-based methods, including Swin-UNet and TransUNet. In particular, GCA-ResUNet yields consistent improvements in delineating small anatomical structures with complex boundaries. These results indicate that the proposed approach provides a favorable trade-off between segmentation accuracy and computational efficiency, offering a practical and scalable solution for clinical deployment.

Jun Ding, Shang Gao

Medical image segmentation underpins computer-aided diagnosis and therapy by supporting clinical diagnosis, preoperative planning, and disease monitoring. While U-Net style convolutional neural networks perform well due to their encoder-decoder structures with skip connections, they struggle to capture long-range dependencies. Transformer-based variants address global context but often require heavy computation and large training datasets. This paper proposes GCA-ResUNet, an efficient segmentation network that integrates Grouped Coordinate Attention (GCA) into ResNet-50 residual blocks. GCA uses grouped coordinate modeling to jointly encode global dependencies across channels and spatial locations, strengthening feature representation and boundary delineation while adding minimal parameter and FLOP overhead compared with self-attention. On the Synapse dataset, GCA-ResUNet achieves a Dice score of 86.11%, and on the ACDC dataset, it reaches 92.64%, surpassing several state-of-the-art baselines while maintaining fast inference and favorable computational efficiency. These results indicate that GCA offers a practical way to enhance convolutional architectures with global modeling capability, enabling high-accuracy and resource-efficient medical image segmentation.

Christoph Metzner, Shang Gao, Drahomira Herrmannova et al.

AI-driven clinical text classification is vital for explainable automated retrieval of population-level health information. This work investigates whether human-based clinical rationales can serve as additional supervision to improve both performance and explainability of transformer-based models that automatically encode clinical documents. We analyzed 99,125 human-based clinical rationales that provide plausible explanations for primary cancer site diagnoses, using them as additional training samples alongside 128,649 electronic pathology reports to evaluate transformer-based models for extracting primary cancer sites. We also investigated sufficiency as a way to measure rationale quality for pre-selecting rationales. Our results showed that clinical rationales as additional training data can improve model performance in high-resource scenarios but produce inconsistent behavior when resources are limited. Using sufficiency as an automatic metric to preselect rationales also leads to inconsistent results. Importantly, models trained on rationales were consistently outperformed by models trained on additional reports instead. This suggests that clinical rationales don't consistently improve model performance and are outperformed by simply using more reports. Therefore, if the goal is optimizing accuracy, annotation efforts should focus on labeling more reports rather than creating rationales. However, if explainability is the priority, training models on rationale-supplemented data may help them better identify rationale-like features. We conclude that using clinical rationales as additional training data results in smaller performance improvements and only slightly better explainability (measured as average token-level rationale coverage) compared to training on additional reports.

Bilal Hussain Abbasi, Zirui Gong, Yanjun Zhang et al.

Despite significant advancements in computer vision, semantic segmentation models may be susceptible to backdoor attacks. These attacks, involving hidden triggers, aim to cause the models to misclassify instances of the victim class as the target class when triggers are present, posing serious threats to the reliability of these models. To further explore the field of backdoor attacks against semantic segmentation, in this paper, we propose a simple yet effective backdoor attack called Contextual Segmentation Backdoor Attack (ConSeg). ConSeg leverages the contextual information inherent in semantic segmentation models to enhance backdoor performance. Our method is motivated by an intriguing observation, i.e., when the target class is set as the `co-occurring' class of the victim class, the victim class can be more easily `mis-segmented'. Building upon this insight, ConSeg mimics the contextual information of the target class and rebuilds it in the victim region to establish the contextual relationship between the target class and the victim class, making the attack easier. Our experiments reveal that ConSeg achieves improvements in Attack Success Rate (ASR) with increases of 15.55\%, compared to existing methods, while exhibiting resilience against state-of-the-art backdoor defenses.

Yu Zhang, Xi Zhang, Hualin zhou et al.

Deep learning for human sensing on edge systems presents significant potential for smart applications. However, its training and development are hindered by the limited availability of sensor data and resource constraints of edge systems. While transferring pre-trained models to different sensing applications is promising, existing methods often require extensive sensor data and computational resources, resulting in high costs and poor adaptability in practice. In this paper, we propose XTransfer, a first-of-its-kind method enabling modality-agnostic, few-shot model transfer with resource-efficient design. XTransfer flexibly uses single or multiple pre-trained models and transfers knowledge across different modalities by (i) model repairing that safely mitigates modality shift by adapting pre-trained layers with only few sensor data, and (ii) layer recombining that efficiently searches and recombines layers of interest from source models in a layer-wise manner to create compact models. We benchmark various baselines across diverse human sensing datasets spanning different modalities. Comprehensive results demonstrate that XTransfer achieves state-of-the-art performance while significantly reducing the costs of sensor data collection, model training, and edge deployment.

Xiaoxing Mo, Yuxuan Cheng, Nan Sun et al.

Deep Neural Networks (DNNs) are vulnerable to backdoor attacks, where attackers implant hidden triggers during training to maliciously control model behavior. Topological Evolution Dynamics (TED) has recently emerged as a powerful tool for detecting backdoor attacks in DNNs. However, TED can be vulnerable to backdoor attacks that adaptively distort topological representation distributions across network layers. To address this limitation, we propose TED-LaST (Topological Evolution Dynamics against Laundry, Slow release, and Target mapping attack strategies), a novel defense strategy that enhances TED's robustness against adaptive attacks. TED-LaST introduces two key innovations: label-supervised dynamics tracking and adaptive layer emphasis. These enhancements enable the identification of stealthy threats that evade traditional TED-based defenses, even in cases of inseparability in topological space and subtle topological perturbations. We review and classify data poisoning tricks in state-of-the-art adaptive attacks and propose enhanced adaptive attack with target mapping, which can dynamically shift malicious tasks and fully leverage the stealthiness that adaptive attacks possess. Our comprehensive experiments on multiple datasets (CIFAR-10, GTSRB, and ImageNet100) and model architectures (ResNet20, ResNet101) show that TED-LaST effectively counteracts sophisticated backdoors like Adap-Blend, Adapt-Patch, and the proposed enhanced adaptive attack. TED-LaST sets a new benchmark for robust backdoor detection, substantially enhancing DNN security against evolving threats.

Zhengyang Ji, Yifan Jia, Shang Gao et al.

Large Vision Language Models (LVLMs) have achieved remarkable progress in multimodal tasks, yet they also exhibit notable social biases. These biases often manifest as unintended associations between neutral concepts and sensitive human attributes, leading to disparate model behaviors across demographic groups. While existing studies primarily focus on detecting and quantifying such biases, they offer limited insight into the underlying mechanisms within the models. To address this gap, we propose an explanatory framework that combines information flow analysis with multi-round dialogue evaluation, aiming to understand the origin of social bias from the perspective of imbalanced internal information utilization. Specifically, we first identify high-contribution image tokens involved in the model's reasoning process for neutral questions via information flow analysis. Then, we design a multi-turn dialogue mechanism to evaluate the extent to which these key tokens encode sensitive information. Extensive experiments reveal that LVLMs exhibit systematic disparities in information usage when processing images of different demographic groups, suggesting that social bias is deeply rooted in the model's internal reasoning dynamics. Furthermore, we complement our findings from a textual modality perspective, showing that the model's semantic representations already display biased proximity patterns, thereby offering a cross-modal explanation of bias formation.

Dietrich Trautmann, Natalia Ostapuk, Quentin Grail et al.

In high-stakes domains like legal question-answering, the accuracy and trustworthiness of generative AI systems are of paramount importance. This work presents a comprehensive benchmark of various methods to assess the groundedness of AI-generated responses, aiming to significantly enhance their reliability. Our experiments include similarity-based metrics and natural language inference models to evaluate whether responses are well-founded in the given contexts. We also explore different prompting strategies for large language models to improve the detection of ungrounded responses. We validated the effectiveness of these methods using a newly created grounding classification corpus, designed specifically for legal queries and corresponding responses from retrieval-augmented prompting, focusing on their alignment with source material. Our results indicate potential in groundedness classification of generated responses, with the best method achieving a macro-F1 score of 0.8. Additionally, we evaluated the methods in terms of their latency to determine their suitability for real-world applications, as this step typically follows the generation process. This capability is essential for processes that may trigger additional manual verification or automated response regeneration. In summary, this study demonstrates the potential of various detection methods to improve the trustworthiness of generative AI in legal settings.

Isaac Lin, Tianye Wang, Shang Gao et al.

Convolutional neural networks (CNNs) have been shown to be state-of-the-art models for visual cortical neurons. Cortical neurons in the primary visual cortex are sensitive to contextual information mediated by extensive horizontal and feedback connections. Standard CNNs integrate global contextual information to model contextual modulation via two mechanisms: successive convolutions and a fully connected readout layer. In this paper, we find that self-attention (SA), an implementation of non-local network mechanisms, can improve neural response predictions over parameter-matched CNNs in two key metrics: tuning curve correlation and peak tuning. We introduce peak tuning as a metric to evaluate a model's ability to capture a neuron's top feature preference. We factorize networks to assess each context mechanism, revealing that information in the local receptive field is most important for modeling overall tuning, but surround information is critically necessary for characterizing the tuning peak. We find that self-attention can replace posterior spatial-integration convolutions when learned incrementally, and is further enhanced in the presence of a fully connected readout layer, suggesting that the two context mechanisms are complementary. Finally, we find that decomposing receptive field learning and contextual modulation learning in an incremental manner may be an effective and robust mechanism for learning surround-center interactions.

Shuaijun Chen, Jinxi Wang, Wei Pan et al.

As a popular representation of 3D data, point cloud may contain noise and need to be filtered before use. Existing point cloud filtering methods either cannot preserve sharp features or result in uneven point distribution in the filtered output. To address this problem, this paper introduces a point cloud filtering method that considers both point distribution and feature preservation during filtering. The key idea is to incorporate a repulsion term with a data term in energy minimization. The repulsion term is responsible for the point distribution, while the data term is to approximate the noisy surfaces while preserving the geometric features. This method is capable of handling models with fine-scale features and sharp features. Extensive experiments show that our method yields better results with a more uniform point distribution ($5.8\times10^{-5}$ Chamfer Distance on average) in seconds.

Xuanyu Duan, Mengmeng Ge, Triet H. M. Le et al.

Internet of Things (IoT) based applications face an increasing number of potential security risks, which need to be systematically assessed and addressed. Expert-based manual assessment of IoT security is a predominant approach, which is usually inefficient. To address this problem, we propose an automated security assessment framework for IoT networks. Our framework first leverages machine learning and natural language processing to analyze vulnerability descriptions for predicting vulnerability metrics. The predicted metrics are then input into a two-layered graphical security model, which consists of an attack graph at the upper layer to present the network connectivity and an attack tree for each node in the network at the bottom layer to depict the vulnerability information. This security model automatically assesses the security of the IoT network by capturing potential attack paths. We evaluate the viability of our approach using a proof-of-concept smart building system model which contains a variety of real-world IoT devices and potential vulnerabilities. Our evaluation of the proposed framework demonstrates its effectiveness in terms of automatically predicting the vulnerability metrics of new vulnerabilities with more than 90% accuracy, on average, and identifying the most vulnerable attack paths within an IoT network. The produced assessment results can serve as a guideline for cybersecurity professionals to take further actions and mitigate risks in a timely manner.

Yaping Jing, Xuequan Lu, Shang Gao

Face recognition is one of the most studied research topics in the community. In recent years, the research on face recognition has shifted to using 3D facial surfaces, as more discriminating features can be represented by the 3D geometric information. This survey focuses on reviewing the 3D face recognition techniques developed in the past ten years which are generally categorized into conventional methods and deep learning methods. The categorized techniques are evaluated using detailed descriptions of the representative works. The advantages and disadvantages of the techniques are summarized in terms of accuracy, complexity and robustness to face variation (expression, pose and occlusions, etc). The main contribution of this survey is that it comprehensively covers both conventional methods and deep learning methods on 3D face recognition. In addition, a review of available 3D face databases is provided, along with the discussion of future research challenges and directions.

Mohammed Alawad, Shang Gao, Mayanka Chandra Shekar et al.

A key component of deep learning (DL) for natural language processing (NLP) is word embeddings. Word embeddings that effectively capture the meaning and context of the word that they represent can significantly improve the performance of downstream DL models for various NLP tasks. Many existing word embeddings techniques capture the context of words based on word co-occurrence in documents and text; however, they often cannot capture broader domain-specific relationships between concepts that may be crucial for the NLP task at hand. In this paper, we propose a method to integrate external knowledge from medical terminology ontologies into the context captured by word embeddings. Specifically, we use a medical knowledge graph, such as the unified medical language system (UMLS), to find connections between clinical terms in cancer pathology reports. This approach aims to minimize the distance between connected clinical concepts. We evaluate the proposed approach using a Multitask Convolutional Neural Network (MT-CNN) to extract six cancer characteristics -- site, subsite, laterality, behavior, histology, and grade -- from a dataset of ~900K cancer pathology reports. The results show that the MT-CNN model which uses our domain informed embeddings outperforms the same MT-CNN using standard word2vec embeddings across all tasks, with an improvement in the overall micro- and macro-F1 scores by 4.97\%and 22.5\%, respectively.

Aparna Vegendla, Anh Nguyen Duc, Shang Gao et al.

Software ecosystems (SECOs) and open innovation processes have been claimed as a way forward for the software industry. A proper understanding of requirements is as important for these IT-systems as for more traditional ones. This paper presents a mapping study on the issues of requirements engineering and quality aspects in SECOs and analyzes emerging ideas. Our findings indicate that among the various phases or subtasks of requirements engineering, most of the SECO specific research has been accomplished on elicitation, analysis, and modeling. On the other hand, requirements selection, prioritization, verification, and traceability has attracted few published studies. Among the various quality attributes, most of the SECOs research has been performed on security, performance and testability. On the other hand, reliability, safety, maintainability, transparency, usability attracted few published studies. The paper provides a review of the academic literature about SECO-related requirements engineering activities, modeling approaches, and quality attributes, positions the source publications in a taxonomy of issues and identifies gaps where there has been little research.