Thomas R. Niesler

Christiaan M. Geldenhuys, Thomas R. Niesler

We show that pretrained acoustic embeddings classify elephant vocalisations at a level approaching that of end-to-end supervised neural networks, without any fine-tuning of the embedding model. This result is of practical importance because annotated bioacoustic data are scarce and costly to obtain, leaving conventional supervised approaches prone to overfitting and to poor generalisation under domain shift. A broad range of embedding models drawn from general audio, speech, and bioacoustic domains is evaluated, all of which are either out-of-domain (containing no bioacoustic data) or out-of-species (containing no elephant call data). The embedding networks themselves remain fixed; only the lightweight downstream classifiers, which include a linear model and several small neural networks, are trained. Among the models considered, Perch 2.0 achieves the best cross-validated classification performance, attaining AUCs of 0.849 on African bush elephant (Loxodonta africana) calls and 0.936 on Asian elephant (Elephas maximus) calls, with Perch 1.0 close behind. The best-performing system is within 2.2 % of an end-to-end supervised elephant call classification system. A layerwise analysis of pretrained transformer encoders, considered as embedding models, shows that intermediate representations outperform final-layer outputs. The second layer of both wav2vec2.0 and HuBERT encodes sufficient information for effective elephant call classification; truncation at this layer therefore preserves classification performance whilst retaining only approximately 10 % of the parameters of the full network. Such compact embedding networks are well suited to on-device processing where computational resources are limited.

Christiaan M. Geldenhuys, Thomas R. Niesler

We consider the problem of detecting, isolating and classifying elephant calls in continuously recorded audio. Such automatic call characterisation can assist conservation efforts and inform environmental management strategies. In contrast to previous work in which call detection was performed at a segment level, we perform call detection at a frame level which implicitly also allows call endpointing, the isolation of a call in a longer recording. For experimentation, we employ two annotated datasets, one containing Asian and the other African elephant vocalisations. We evaluate several shallow and deep classifier models, and show that the current best performance can be improved by using an audio spectrogram transformer (AST), a neural architecture which has not been used for this purpose before, and which we have configured in a novel sequence-to-sequence manner. We also show that using transfer learning by pre-training leads to further improvements both in terms of computational complexity and performance. Finally, we consider sub-call classification using an accepted taxonomy of call types, a task which has not previously been considered. We show that also in this case the transformer architectures provide the best performance. Our best classifiers achieve an average precision (AP) of 0.962 for framewise binary call classification, and an area under the receiver operating characteristic (AUC) of 0.957 and 0.979 for call classification with 5 classes and sub-call classification with 7 classes respectively. All of these represent either new benchmarks (sub-call classifications) or improvements on previously best systems. We conclude that a fully-automated elephant call detection and subcall classification system is within reach. Such a system would provide valuable information on the behaviour and state of elephant herds for the purposes of conservation and management.

Christiaan M. Geldenhuys, Günther Tonitz, Thomas R. Niesler

While recent sound event detection (SED) systems can identify baleen whale calls in marine audio, challenges related to false positive and minority-class detection persist. We propose the boundary proposal network (BPN), which extends an existing lightweight SED system. The BPN is inspired by work in image object detection and aims to reduce the number of false positive detections. It achieves this by using intermediate latent representations computed within the backbone classification model to gate the final output. When added to an existing SED system, the BPN achieves a 16.8 % absolute increase in precision, as well as 21.3 % and 9.4 % improvements in the F1-score for minority-class d-calls and bp-calls, respectively. We further consider two approaches to the selection of post-processing hyperparameters: a forward-search and a backward-search. By separately optimising event-level and frame-level hyperparameters, these two approaches lead to considerable performance improvements over parameters selected using empirical methods. The complete WhaleVAD-BPN system achieves a cross-validated development F1-score of 0.475, which is a 9.8 % absolute improvement over the baseline.