Yating Huang

Yupei Zhang, Yating Huang, Wanming Hu et al.

Multimodal approaches that integrate histology and genomics hold strong potential for precision oncology. However, phenotypic and genotypic heterogeneity limits the quality of intra-modal representations and hinders effective inter-modal integration. Furthermore, most existing methods overlook real-world clinical scenarios where genomics may be partially missing or entirely unavailable. We propose a flexible multimodal prototyping framework to integrate whole slide images and incomplete genomics for precision oncology. Our approach has four key components: 1) Biological Prototyping using text prompting and prototype-wise weighting; 2) Multiview Alignment through sample- and distribution-wise alignments; 3) Bipartite Fusion to capture both shared and modality-specific information for multimodal fusion; and 4) Semantic Genomics Imputation to handle missing data. Extensive experiments demonstrate the consistent superiority of the proposed method compared to other state-of-the-art approaches on multiple downstream tasks. The code is available at https://github.com/helenypzhang/Interpretable-Multimodal-Prototyping.

Yating Huang, Ziyan Huang, Lintao Xiang et al.

Accurate analysis of pathological images is essential for automated tumor diagnosis but remains challenging due to high structural similarity and subtle morphological variations in tissue images. Current vision-language (VL) models often struggle to capture the complex reasoning required for interpreting structured pathological reports. To address these limitations, we propose PathoHR-Bench, a novel benchmark designed to evaluate VL models' abilities in hierarchical semantic understanding and compositional reasoning within the pathology domain. Results of this benchmark reveal that existing VL models fail to effectively model intricate cross-modal relationships, hence limiting their applicability in clinical setting. To overcome this, we further introduce a pathology-specific VL training scheme that generates enhanced and perturbed samples for multimodal contrastive learning. Experimental evaluations demonstrate that our approach achieves state-of-the-art performance on PathoHR-Bench and six additional pathology datasets, highlighting its effectiveness in fine-grained pathology representation.

Lintao Xiang, Hongpei Zheng, Yating Huang et al.

3D Gaussian splatting (3DGS) is an innovative rendering technique that surpasses the neural radiance field (NeRF) in both rendering speed and visual quality by leveraging an explicit 3D scene representation. Existing 3DGS approaches require a large number of calibrated views to generate a consistent and complete scene representation. When input views are limited, 3DGS tends to overfit the training views, leading to noticeable degradation in rendering quality. To address this limitation, we propose a Point-wise Feature-Aware Gaussian Splatting framework that enables real-time, high-quality rendering from sparse training views. Specifically, we first employ the latest stereo foundation model to estimate accurate camera poses and reconstruct a dense point cloud for Gaussian initialization. We then encode the colour attributes of each 3D Gaussian by sampling and aggregating multiscale 2D appearance features from sparse inputs. To enhance point-wise appearance representation, we design a point interaction network based on a self-attention mechanism, allowing each Gaussian point to interact with its nearest neighbors. These enriched features are subsequently decoded into Gaussian parameters through two lightweight multi-layer perceptrons (MLPs) for final rendering. Extensive experiments on diverse benchmarks demonstrate that our method significantly outperforms NeRF-based approaches and achieves competitive performance under few-shot settings compared to the state-of-the-art 3DGS methods.

Yating Huang, Qijun Yang, Lintao Xiang et al.

Accurate interpretation of histopathological images demands integration of information across spatial and semantic scales, from nuclear morphology and cellular textures to global tissue organization and disease-specific patterns. Although recent foundation models in pathology have shown strong capabilities in capturing global tissue context, their omission of cell-level feature modeling remains a key limitation for fine-grained tasks such as cancer subtype classification. To address this, we propose a dual-stream architecture that models the interplay between macroscale tissue features and aggregated cellular representations. To efficiently aggregate information from large cell sets, we propose a receptance-weighted key-value aggregation model, a recurrent transformer that captures inter-cell dependencies with linear complexity. Furthermore, we introduce a bidirectional tissue-cell interaction module to enable mutual attention between localized cellular cues and their surrounding tissue environment. Experiments on four histopathological subtype classification benchmarks show that the proposed method outperforms existing models, demonstrating the critical role of cell-level aggregation and tissue-cell interaction in fine-grained computational pathology.

Qijun Yang, Yating Huang, Lintao Xiang et al.

Image denoising plays a critical role in biomedical and microscopy imaging, especially when acquiring wide-field fluorescence-stained images. This task faces challenges in multiple fronts, including limitations in image acquisition conditions, complex noise types, algorithm adaptability, and clinical application demands. Although many deep learning-based denoising techniques have demonstrated promising results, further improvements are needed in preserving image details, enhancing algorithmic efficiency, and increasing clinical interpretability. We propose an unsupervised image denoising method based on a Generative Adversarial Network (GAN) architecture. The approach introduces a multi-scale adaptive generator based on the Wavelet Transform and a dual-branch discriminator that integrates difference perception feature maps with original features. Experimental results on multiple biomedical microscopy image datasets show that the proposed model achieves state-of-the-art denoising performance, particularly excelling in the preservation of high-frequency information. Furthermore, the dual-branch discriminator is seamlessly compatible with various GAN frameworks. The proposed quality-aware, wavelet-driven GAN denoising model is termed as QWD-GAN.

Qinghua Liu, Yating Huang, Yunzhe Hao et al.

Multi-modal cues, including spatial information, facial expression and voiceprint, are introduced to the speech separation and speaker extraction tasks to serve as complementary information to achieve better performance. However, the introduction of these cues brings about an increasing number of parameters and model complexity, which makes it harder to deploy these models on resource-constrained devices. In this paper, we alleviate the aforementioned problem by proposing a Lightweight Multi-modal framework for Speaker Extraction (LiMuSE). We propose to use GC-equipped TCN, which incorporates Group Communication (GC) and Temporal Convolutional Network (TCN) in the Context Codec module, the audio block and the fusion block. The experiments on the MC_GRID dataset demonstrate that LiMuSE achieves on par or better performance with a much smaller number of parameters and less model complexity. We further investigate the impacts of the quantization of LiMuSE. Our code and dataset are provided.