Petar Veličković

Petar Veličković, Adrià Puigdomènech Badia, David Budden et al. · deepmind

Learning representations of algorithms is an emerging area of machine learning, seeking to bridge concepts from neural networks with classical algorithms. Several important works have investigated whether neural networks can effectively reason like algorithms, typically by learning to execute them. The common trend in the area, however, is to generate targeted kinds of algorithmic data to evaluate specific hypotheses, making results hard to transfer across publications, and increasing the barrier of entry. To consolidate progress and work towards unified evaluation, we propose the CLRS Algorithmic Reasoning Benchmark, covering classical algorithms from the Introduction to Algorithms textbook. Our benchmark spans a variety of algorithmic reasoning procedures, including sorting, searching, dynamic programming, graph algorithms, string algorithms and geometric algorithms. We perform extensive experiments to demonstrate how several popular algorithmic reasoning baselines perform on these tasks, and consequently, highlight links to several open challenges. Our library is readily available at https://github.com/deepmind/clrs.

Vladimir V. Mirjanić, Razvan Pascanu, Petar Veličković · deepmind

Neural Algorithmic Reasoning (NAR) is a research area focused on designing neural architectures that can reliably capture classical computation, usually by learning to execute algorithms. A typical approach is to rely on Graph Neural Network (GNN) architectures, which encode inputs in high-dimensional latent spaces that are repeatedly transformed during the execution of the algorithm. In this work we perform a detailed analysis of the structure of the latent space induced by the GNN when executing algorithms. We identify two possible failure modes: (i) loss of resolution, making it hard to distinguish similar values; (ii) inability to deal with values outside the range observed during training. We propose to solve the first issue by relying on a softmax aggregator, and propose to decay the latent space in order to deal with out-of-range values. We show that these changes lead to improvements on the majority of algorithms in the standard CLRS-30 benchmark when using the state-of-the-art Triplet-GMPNN processor. Our code is available at https://github.com/mirjanic/nar-latent-spaces

Andrew Dudzik, Tamara von Glehn, Razvan Pascanu et al. · deepmind

State-of-the-art neural algorithmic reasoners make use of message passing in graph neural networks (GNNs). But typical GNNs blur the distinction between the definition and invocation of the message function, forcing a node to send messages to its neighbours at every layer, synchronously. When applying GNNs to learn to execute dynamic programming algorithms, however, on most steps only a handful of the nodes would have meaningful updates to send. One, hence, runs the risk of inefficiencies by sending too much irrelevant data across the graph. But more importantly, many intermediate GNN steps have to learn the identity functions, which is a non-trivial learning problem. In this work, we explicitly separate the concepts of node state update and message function invocation. With this separation, we obtain a mathematical formulation that allows us to reason about asynchronous computation in both algorithms and neural networks. Our analysis yields several practical implementations of synchronous scalable GNN layers that are provably invariant under various forms of asynchrony.

Borja Ibarz, Vitaly Kurin, George Papamakarios et al. · deepmind

The cornerstone of neural algorithmic reasoning is the ability to solve algorithmic tasks, especially in a way that generalises out of distribution. While recent years have seen a surge in methodological improvements in this area, they mostly focused on building specialist models. Specialist models are capable of learning to neurally execute either only one algorithm or a collection of algorithms with identical control-flow backbone. Here, instead, we focus on constructing a generalist neural algorithmic learner -- a single graph neural network processor capable of learning to execute a wide range of algorithms, such as sorting, searching, dynamic programming, path-finding and geometry. We leverage the CLRS benchmark to empirically show that, much like recent successes in the domain of perception, generalist algorithmic learners can be built by "incorporating" knowledge. That is, it is possible to effectively learn algorithms in a multi-task manner, so long as we can learn to execute them well in a single-task regime. Motivated by this, we present a series of improvements to the input representation, training regime and processor architecture over CLRS, improving average single-task performance by over 20% from prior art. We then conduct a thorough ablation of multi-task learners leveraging these improvements. Our results demonstrate a generalist learner that effectively incorporates knowledge captured by specialist models.

Beatrice Bevilacqua, Kyriacos Nikiforou, Borja Ibarz et al. · oxford

Recent work on neural algorithmic reasoning has investigated the reasoning capabilities of neural networks, effectively demonstrating they can learn to execute classical algorithms on unseen data coming from the train distribution. However, the performance of existing neural reasoners significantly degrades on out-of-distribution (OOD) test data, where inputs have larger sizes. In this work, we make an important observation: there are many different inputs for which an algorithm will perform certain intermediate computations identically. This insight allows us to develop data augmentation procedures that, given an algorithm's intermediate trajectory, produce inputs for which the target algorithm would have exactly the same next trajectory step. We ensure invariance in the next-step prediction across such inputs, by employing a self-supervised objective derived by our observation, formalised in a causal graph. We prove that the resulting method, which we call Hint-ReLIC, improves the OOD generalisation capabilities of the reasoner. We evaluate our method on the CLRS algorithmic reasoning benchmark, where we show up to 3$\times$ improvements on the OOD test data.

Mehdi Azabou, Venkataramana Ganesh, Shantanu Thakoor et al. · gatech

Message passing neural networks have shown a lot of success on graph-structured data. However, there are many instances where message passing can lead to over-smoothing or fail when neighboring nodes belong to different classes. In this work, we introduce a simple yet general framework for improving learning in message passing neural networks. Our approach essentially upsamples edges in the original graph by adding "slow nodes" at each edge that can mediate communication between a source and a target node. Our method only modifies the input graph, making it plug-and-play and easy to use with existing models. To understand the benefits of slowing down message passing, we provide theoretical and empirical analyses. We report results on several supervised and self-supervised benchmarks, and show improvements across the board, notably in heterophilic conditions where adjacent nodes are more likely to have different labels. Finally, we show how our approach can be used to generate augmentations for self-supervised learning, where slow nodes are randomly introduced into different edges in the graph to generate multi-scale views with variable path lengths.

Petar Veličković, Federico Barbero, Christos Perivolaropoulos et al. · deepmind

Perplexity -- a function measuring a model's overall level of "surprise" when encountering a particular output -- has gained significant traction in recent years, both as a loss function and as a simple-to-compute metric of model quality. Prior studies have pointed out several limitations of perplexity, often from an empirical manner. Here we leverage recent results on Transformer continuity to show in a rigorous manner how perplexity may be an unsuitable metric for model selection. Specifically, we prove that, if there is any sequence that a compact decoder-only Transformer model predicts accurately and confidently -- a necessary pre-requisite for strong generalisation -- it must imply existence of another sequence with very low perplexity, but not predicted correctly by that same model. Further, by analytically studying iso-perplexity plots, we find that perplexity will not always select for the more accurate model -- rather, any increase in model confidence must be accompanied by a commensurate rise in accuracy for the new model to be selected.

Zhe Wang, Petar Veličković, Daniel Hennes et al.

Identifying key patterns of tactics implemented by rival teams, and developing effective responses, lies at the heart of modern football. However, doing so algorithmically remains an open research challenge. To address this unmet need, we propose TacticAI, an AI football tactics assistant developed and evaluated in close collaboration with domain experts from Liverpool FC. We focus on analysing corner kicks, as they offer coaches the most direct opportunities for interventions and improvements. TacticAI incorporates both a predictive and a generative component, allowing the coaches to effectively sample and explore alternative player setups for each corner kick routine and to select those with the highest predicted likelihood of success. We validate TacticAI on a number of relevant benchmark tasks: predicting receivers and shot attempts and recommending player position adjustments. The utility of TacticAI is validated by a qualitative study conducted with football domain experts at Liverpool FC. We show that TacticAI's model suggestions are not only indistinguishable from real tactics, but also favoured over existing tactics 90% of the time, and that TacticAI offers an effective corner kick retrieval system. TacticAI achieves these results despite the limited availability of gold-standard data, achieving data efficiency through geometric deep learning.

Francesco Di Giovanni, T. Konstantin Rusch, Michael M. Bronstein et al. · eth-zurich

Graph Neural Networks (GNNs) are the state-of-the-art model for machine learning on graph-structured data. The most popular class of GNNs operate by exchanging information between adjacent nodes, and are known as Message Passing Neural Networks (MPNNs). Given their widespread use, understanding the expressive power of MPNNs is a key question. However, existing results typically consider settings with uninformative node features. In this paper, we provide a rigorous analysis to determine which function classes of node features can be learned by an MPNN of a given capacity. We do so by measuring the level of pairwise interactions between nodes that MPNNs allow for. This measure provides a novel quantitative characterization of the so-called over-squashing effect, which is observed to occur when a large volume of messages is aggregated into fixed-size vectors. Using our measure, we prove that, to guarantee sufficient communication between pairs of nodes, the capacity of the MPNN must be large enough, depending on properties of the input graph structure, such as commute times. For many relevant scenarios, our analysis results in impossibility statements in practice, showing that over-squashing hinders the expressive power of MPNNs. We validate our theoretical findings through extensive controlled experiments and ablation studies.

Federico Barbero, Cristian Bodnar, Haitz Sáez de Ocáriz Borde et al. · cambridge

A Sheaf Neural Network (SNN) is a type of Graph Neural Network (GNN) that operates on a sheaf, an object that equips a graph with vector spaces over its nodes and edges and linear maps between these spaces. SNNs have been shown to have useful theoretical properties that help tackle issues arising from heterophily and over-smoothing. One complication intrinsic to these models is finding a good sheaf for the task to be solved. Previous works proposed two diametrically opposed approaches: manually constructing the sheaf based on domain knowledge and learning the sheaf end-to-end using gradient-based methods. However, domain knowledge is often insufficient, while learning a sheaf could lead to overfitting and significant computational overhead. In this work, we propose a novel way of computing sheaves drawing inspiration from Riemannian geometry: we leverage the manifold assumption to compute manifold-and-graph-aware orthogonal maps, which optimally align the tangent spaces of neighbouring data points. We show that this approach achieves promising results with less computational overhead when compared to previous SNN models. Overall, this work provides an interesting connection between algebraic topology and differential geometry, and we hope that it will spark future research in this direction.

Michal Pándy, Weikang Qiu, Gabriele Corso et al.

Searching for a path between two nodes in a graph is one of the most well-studied and fundamental problems in computer science. In numerous domains such as robotics, AI, or biology, practitioners develop search heuristics to accelerate their pathfinding algorithms. However, it is a laborious and complex process to hand-design heuristics based on the problem and the structure of a given use case. Here we present PHIL (Path Heuristic with Imitation Learning), a novel neural architecture and a training algorithm for discovering graph search and navigation heuristics from data by leveraging recent advances in imitation learning and graph representation learning. At training time, we aggregate datasets of search trajectories and ground-truth shortest path distances, which we use to train a specialized graph neural network-based heuristic function using backpropagation through steps of the pathfinding process. Our heuristic function learns graph embeddings useful for inferring node distances, runs in constant time independent of graph sizes, and can be easily incorporated in an algorithm such as A* at test time. Experiments show that PHIL reduces the number of explored nodes compared to state-of-the-art methods on benchmark datasets by 58.5\% on average, can be directly applied in diverse graphs ranging from biological networks to road networks, and allows for fast planning in time-critical robotics domains.

Petar Veličković

In many ways, graphs are the main modality of data we receive from nature. This is due to the fact that most of the patterns we see, both in natural and artificial systems, are elegantly representable using the language of graph structures. Prominent examples include molecules (represented as graphs of atoms and bonds), social networks and transportation networks. This potential has already been seen by key scientific and industrial groups, with already-impacted application areas including traffic forecasting, drug discovery, social network analysis and recommender systems. Further, some of the most successful domains of application for machine learning in previous years -- images, text and speech processing -- can be seen as special cases of graph representation learning, and consequently there has been significant exchange of information between these areas. The main aim of this short survey is to enable the reader to assimilate the key concepts in the area, and position graph representation learning in a proper context with related fields.

Luca Beurer-Kellner, Martin Vechev, Laurent Vanbever et al.

We present a new method for scaling automatic configuration of computer networks. The key idea is to relax the computationally hard search problem of finding a configuration that satisfies a given specification into an approximate objective amenable to learning-based techniques. Based on this idea, we train a neural algorithmic model which learns to generate configurations likely to (fully or partially) satisfy a given specification under existing routing protocols. By relaxing the rigid satisfaction guarantees, our approach (i) enables greater flexibility: it is protocol-agnostic, enables cross-protocol reasoning, and does not depend on hardcoded rules; and (ii) finds configurations for much larger computer networks than previously possible. Our learned synthesizer is up to 490x faster than state-of-the-art SMT-based methods, while producing configurations which on average satisfy more than 93% of the provided requirements.

Valerie Engelmayer, Dobrik Georgiev, Petar Veličković · cambridge

Neural algorithmic reasoners are parallel processors. Teaching them sequential algorithms contradicts this nature, rendering a significant share of their computations redundant. Parallel algorithms however may exploit their full computational power, therefore requiring fewer layers to be executed. This drastically reduces training times, as we observe when comparing parallel implementations of searching, sorting and finding strongly connected components to their sequential counterparts on the CLRS framework. Additionally, parallel versions achieve (often strongly) superior predictive performance.

Andrew Dudzik, Petar Veličković

Recent advances in neural algorithmic reasoning with graph neural networks (GNNs) are propped up by the notion of algorithmic alignment. Broadly, a neural network will be better at learning to execute a reasoning task (in terms of sample complexity) if its individual components align well with the target algorithm. Specifically, GNNs are claimed to align with dynamic programming (DP), a general problem-solving strategy which expresses many polynomial-time algorithms. However, has this alignment truly been demonstrated and theoretically quantified? Here we show, using methods from category theory and abstract algebra, that there exists an intricate connection between GNNs and DP, going well beyond the initial observations over individual algorithms such as Bellman-Ford. Exposing this connection, we easily verify several prior findings in the literature, produce better-grounded GNN architectures for edge-centric tasks, and demonstrate empirical results on the CLRS algorithmic reasoning benchmark. We hope our exposition will serve as a foundation for building stronger algorithmically aligned GNNs.

Andreea Deac, Marc Lackenby, Petar Veličković

Deploying graph neural networks (GNNs) on whole-graph classification or regression tasks is known to be challenging: it often requires computing node features that are mindful of both local interactions in their neighbourhood and the global context of the graph structure. GNN architectures that navigate this space need to avoid pathological behaviours, such as bottlenecks and oversquashing, while ideally having linear time and space complexity requirements. In this work, we propose an elegant approach based on propagating information over expander graphs. We leverage an efficient method for constructing expander graphs of a given size, and use this insight to propose the EGP model. We show that EGP is able to address all of the above concerns, while requiring minimal effort to set up, and provide evidence of its empirical utility on relevant graph classification datasets and baselines in the Open Graph Benchmark. Importantly, using expander graphs as a template for message passing necessarily gives rise to negative curvature. While this appears to be counterintuitive in light of recent related work on oversquashing, we theoretically demonstrate that negatively curved edges are likely to be required to obtain scalable message passing without bottlenecks. To the best of our knowledge, this is a previously unstudied result in the context of graph representation learning, and we believe our analysis paves the way to a novel class of scalable methods to counter oversquashing in GNNs.

Alex Vitvitskyi, Michael Boratko, Matej Grcic et al.

The choice of activation function is an active area of research, with different proposals aimed at improving optimization, while maintaining expressivity. Additionally, the activation function can significantly alter the implicit inductive bias of the architecture, controlling its non-linear behavior. In this paper, in line with previous work, we argue that evolutionary search provides a useful framework for finding new activation functions, while we also make two novel observations. The first is that modern pipelines, such as AlphaEvolve, which relies on frontier LLMs as a mutator operator, allows for a much wider and flexible search space; e.g., over all possible python functions within a certain FLOP budget, eliminating the need for manually constructed search spaces. In addition, these pipelines will be biased towards meaningful activation functions, given their ability to represent common knowledge, leading to a potentially more efficient search of the space. The second observation is that, through this framework, one can target not only performance improvements but also activation functions that encode particular inductive biases. This can be done by using performance on out-of-distribution data as a fitness function, reflecting the degree to which the architecture respects the inherent structure in the data in a manner independent of distribution shifts. We carry an empirical exploration of this proposal and show that relatively small scale synthetic datasets can be sufficient for AlphaEvolve to discover meaningful activations.

Ivana Nikoloska, Osvaldo Simeone, Leonardo Banchi et al.

Adaptive gating plays a key role in temporal data processing via classical recurrent neural networks (RNN), as it facilitates retention of past information necessary to predict the future, providing a mechanism that preserves invariance to time warping transformations. This paper builds on quantum recurrent neural networks (QRNNs), a dynamic model with quantum memory, to introduce a novel class of temporal data processing quantum models that preserve invariance to time-warping transformations of the (classical) input-output sequences. The model, referred to as time warping-invariant QRNN (TWI-QRNN), augments a QRNN with a quantum-classical adaptive gating mechanism that chooses whether to apply a parameterized unitary transformation at each time step as a function of the past samples of the input sequence via a classical recurrent model. The TWI-QRNN model class is derived from first principles, and its capacity to successfully implement time-warping transformations is experimentally demonstrated on examples with classical or quantum dynamics.

Danilo Numeroso, Davide Bacciu, Petar Veličković

Neural Algorithmic Reasoning is an emerging area of machine learning which seeks to infuse algorithmic computation in neural networks, typically by training neural models to approximate steps of classical algorithms. In this context, much of the current work has focused on learning reachability and shortest path graph algorithms, showing that joint learning on similar algorithms is beneficial for generalisation. However, when targeting more complex problems, such similar algorithms become more difficult to find. Here, we propose to learn algorithms by exploiting duality of the underlying algorithmic problem. Many algorithms solve optimisation problems. We demonstrate that simultaneously learning the dual definition of these optimisation problems in algorithmic learning allows for better learning and qualitatively better solutions. Specifically, we exploit the max-flow min-cut theorem to simultaneously learn these two algorithms over synthetically generated graphs, demonstrating the effectiveness of the proposed approach. We then validate the real-world utility of our dual algorithmic reasoner by deploying it on a challenging brain vessel classification task, which likely depends on the vessels' flow properties. We demonstrate a clear performance gain when using our model within such a context, and empirically show that learning the max-flow and min-cut algorithms together is critical for achieving such a result.

Ameya Velingker, Ali Kemal Sinop, Ira Ktena et al.

Graph Neural Networks (GNNs) have emerged as a powerful technique for learning on relational data. Owing to the relatively limited number of message passing steps they perform -- and hence a smaller receptive field -- there has been significant interest in improving their expressivity by incorporating structural aspects of the underlying graph. In this paper, we explore the use of affinity measures as features in graph neural networks, in particular measures arising from random walks, including effective resistance, hitting and commute times. We propose message passing networks based on these features and evaluate their performance on a variety of node and graph property prediction tasks. Our architecture has lower computational complexity, while our features are invariant to the permutations of the underlying graph. The measures we compute allow the network to exploit the connectivity properties of the graph, thereby allowing us to outperform relevant benchmarks for a wide variety of tasks, often with significantly fewer message passing steps. On one of the largest publicly available graph regression datasets, OGB-LSC-PCQM4Mv1, we obtain the best known single-model validation MAE at the time of writing.

Euan Ong, Petar Veličković

Graph neural networks (GNNs) have been shown to be highly sensitive to the choice of aggregation function. While summing over a node's neighbours can approximate any permutation-invariant function over discrete inputs, Cohen-Karlik et al. [2020] proved there are set-aggregation problems for which summing cannot generalise to unbounded inputs, proposing recurrent neural networks regularised towards permutation-invariance as a more expressive aggregator. We show that these results carry over to the graph domain: GNNs equipped with recurrent aggregators are competitive with state-of-the-art permutation-invariant aggregators, on both synthetic benchmarks and real-world problems. However, despite the benefits of recurrent aggregators, their $O(V)$ depth makes them both difficult to parallelise and harder to train on large graphs. Inspired by the observation that a well-behaved aggregator for a GNN is a commutative monoid over its latent space, we propose a framework for constructing learnable, commutative, associative binary operators. And with this, we construct an aggregator of $O(\log V)$ depth, yielding exponential improvements for both parallelism and dependency length while achieving performance competitive with recurrent aggregators. Based on our empirical observations, our proposed learnable commutative monoid (LCM) aggregator represents a favourable tradeoff between efficient and expressive aggregators.

Jonas Jürß, Dulhan Jayalath, Petar Veličković

Learning models that execute algorithms can enable us to address a key problem in deep learning: generalizing to out-of-distribution data. However, neural networks are currently unable to execute recursive algorithms because they do not have arbitrarily large memory to store and recall state. To address this, we (1) propose a way to augment graph neural networks (GNNs) with a stack, and (2) develop an approach for capturing intermediate algorithm trajectories that improves algorithmic alignment with recursive algorithms over previous methods. The stack allows the network to learn to store and recall a portion of the state of the network at a particular time, analogous to the action of a call stack in a recursive algorithm. This augmentation permits the network to reason recursively. We empirically demonstrate that our proposals significantly improve generalization to larger input graphs over prior work on depth-first search (DFS).

Abbas Mehrabian, Ankit Anand, Hyunjik Kim et al.

This work studies a central extremal graph theory problem inspired by a 1975 conjecture of Erdős, which aims to find graphs with a given size (number of nodes) that maximize the number of edges without having 3- or 4-cycles. We formulate this problem as a sequential decision-making problem and compare AlphaZero, a neural network-guided tree search, with tabu search, a heuristic local search method. Using either method, by introducing a curriculum -- jump-starting the search for larger graphs using good graphs found at smaller sizes -- we improve the state-of-the-art lower bounds for several sizes. We also propose a flexible graph-generation environment and a permutation-invariant network architecture for learning to search in the space of graphs.

Rishabh Jain, Petar Veličković, Pietro Liò

Graph Neural Networks (GNNs) have shown considerable success in neural algorithmic reasoning. Many traditional algorithms make use of an explicit memory in the form of a data structure. However, there has been limited exploration on augmenting GNNs with external memory. In this paper, we present Neural Priority Queues, a differentiable analogue to algorithmic priority queues, for GNNs. We propose and motivate a desiderata for memory modules, and show that Neural PQs exhibit the desiderata, and reason about their use with algorithmic reasoning. This is further demonstrated by empirical results on the CLRS-30 dataset. Furthermore, we find the Neural PQs useful in capturing long-range interactions, as empirically shown on a dataset from the Long-Range Graph Benchmark.

Yu He, Petar Veličković, Pietro Liò et al.

Neural algorithmic reasoning studies the problem of learning algorithms with neural networks, especially with graph architectures. A recent proposal, XLVIN, reaps the benefits of using a graph neural network that simulates the value iteration algorithm in deep reinforcement learning agents. It allows model-free planning without access to privileged information about the environment, which is usually unavailable. However, XLVIN only supports discrete action spaces, and is hence nontrivially applicable to most tasks of real-world interest. We expand XLVIN to continuous action spaces by discretization, and evaluate several selective expansion policies to deal with the large planning graphs. Our proposal, CNAP, demonstrates how neural algorithmic reasoning can make a measurable impact in higher-dimensional continuous control settings, such as MuJoCo, bringing gains in low-data settings and outperforming model-free baselines.

Dániel Unyi, Ferdinando Insalata, Petar Veličković et al.

The automated segmentation of cortical areas has been a long-standing challenge in medical image analysis. The complex geometry of the cortex is commonly represented as a polygon mesh, whose segmentation can be addressed by graph-based learning methods. When cortical meshes are misaligned across subjects, current methods produce significantly worse segmentation results, limiting their ability to handle multi-domain data. In this paper, we investigate the utility of E(n)-equivariant graph neural networks (EGNNs), comparing their performance against plain graph neural networks (GNNs). Our evaluation shows that GNNs outperform EGNNs on aligned meshes, due to their ability to leverage the presence of a global coordinate system. On misaligned meshes, the performance of plain GNNs drop considerably, while E(n)-equivariant message passing maintains the same segmentation results. The best results can also be obtained by using plain GNNs on realigned data (co-registered meshes in a global coordinate system).

Kaijia Xu, Petar Veličković

Neural algorithmic reasoning (NAR) is an emerging field that seeks to design neural networks that mimic classical algorithmic computations. Today, graph neural networks (GNNs) are widely used in neural algorithmic reasoners due to their message passing framework and permutation equivariance. In this extended abstract, we challenge this design choice, and replace the equivariant aggregation function with a recurrent neural network. While seemingly counter-intuitive, this approach has appropriate grounding when nodes have a natural ordering -- and this is the case frequently in established reasoning benchmarks like CLRS-30. Indeed, our recurrent NAR (RNAR) model performs very strongly on such tasks, while handling many others gracefully. A notable achievement of RNAR is its decisive state-of-the-art result on the Heapsort and Quickselect tasks, both deemed as a significant challenge for contemporary neural algorithmic reasoners -- especially the latter, where RNAR achieves a mean micro-F1 score of 87%.

Igor Sterner, Shiye Su, Petar Veličković

We explore graph rewiring methods that optimise commute time. Recent graph rewiring approaches facilitate long-range interactions in sparse graphs, making such rewirings commute-time-optimal on average. However, when an expert prior exists on which node pairs should or should not interact, a superior rewiring would favour short commute times between these privileged node pairs. We construct two synthetic datasets with known priors reflecting realistic settings, and use these to motivate two bespoke rewiring methods that incorporate the known prior. We investigate the regimes where our rewiring improves test performance on the synthetic datasets. Finally, we perform a case study on a real-world citation graph to investigate the practical implications of our work.

Danilo Numeroso, Davide Bacciu, Petar Veličković

Path finding in graphs is one of the most studied classes of problems in computer science. In this context, search algorithms are often extended with heuristics for a more efficient search of target nodes. In this work we combine recent advancements in Neural Algorithmic Reasoning to learn efficient heuristic functions for path finding problems on graphs. At training time, we exploit multi-task learning to learn jointly the Dijkstra's algorithm and a consistent heuristic function for the A* search algorithm. At inference time, we plug our learnt heuristics into the A* algorithm. Results show that running A* over the learnt heuristics value can greatly speed up target node searching compared to Dijkstra, while still finding minimal-cost paths.

Gheorghe Comanici, Eric Bieber, Mike Schaekermann et al. · amazon-science, baidu

In this report, we introduce the Gemini 2.X model family: Gemini 2.5 Pro and Gemini 2.5 Flash, as well as our earlier Gemini 2.0 Flash and Flash-Lite models. Gemini 2.5 Pro is our most capable model yet, achieving SoTA performance on frontier coding and reasoning benchmarks. In addition to its incredible coding and reasoning skills, Gemini 2.5 Pro is a thinking model that excels at multimodal understanding and it is now able to process up to 3 hours of video content. Its unique combination of long context, multimodal and reasoning capabilities can be combined to unlock new agentic workflows. Gemini 2.5 Flash provides excellent reasoning abilities at a fraction of the compute and latency requirements and Gemini 2.0 Flash and Flash-Lite provide high performance at low latency and cost. Taken together, the Gemini 2.X model generation spans the full Pareto frontier of model capability vs cost, allowing users to explore the boundaries of what is possible with complex agentic problem solving.

Larisa Markeeva, Sean McLeish, Borja Ibarz et al.

Eliciting reasoning capabilities from language models (LMs) is a critical direction on the path towards building intelligent systems. Most recent studies dedicated to reasoning focus on out-of-distribution performance on procedurally-generated synthetic benchmarks, bespoke-built to evaluate specific skills only. This trend makes results hard to transfer across publications, slowing down progress. Three years ago, a similar issue was identified and rectified in the field of neural algorithmic reasoning, with the advent of the CLRS benchmark. CLRS is a dataset generator comprising graph execution traces of classical algorithms from the Introduction to Algorithms textbook. Inspired by this, we propose CLRS-Text -- a textual version of these algorithmic traces. Out of the box, CLRS-Text is capable of procedurally generating trace data for thirty diverse, challenging algorithmic tasks across any desirable input distribution, while offering a standard pipeline in which any additional algorithmic tasks may be created in the benchmark. We fine-tune and evaluate various LMs as generalist executors on this benchmark, validating prior work and revealing a novel, interesting challenge for the LM reasoning community. Our code is available at https://github.com/google-deepmind/clrs/tree/master/clrs/_src/clrs_text.

Ravichandra Addanki, Peter W. Battaglia, David Budden et al.

Effectively and efficiently deploying graph neural networks (GNNs) at scale remains one of the most challenging aspects of graph representation learning. Many powerful solutions have only ever been validated on comparatively small datasets, often with counter-intuitive outcomes -- a barrier which has been broken by the Open Graph Benchmark Large-Scale Challenge (OGB-LSC). We entered the OGB-LSC with two large-scale GNNs: a deep transductive node classifier powered by bootstrapping, and a very deep (up to 50-layer) inductive graph regressor regularised by denoising objectives. Our models achieved an award-level (top-3) performance on both the MAG240M and PCQM4M benchmarks. In doing so, we demonstrate evidence of scalable self-supervised graph representation learning, and utility of very deep GNNs -- both very important open issues. Our code is publicly available at: https://github.com/deepmind/deepmind-research/tree/master/ogb_lsc.

Theodore Papamarkou, Tolga Birdal, Michael Bronstein et al.

Topological deep learning (TDL) is a rapidly evolving field that uses topological features to understand and design deep learning models. This paper posits that TDL is the new frontier for relational learning. TDL may complement graph representation learning and geometric deep learning by incorporating topological concepts, and can thus provide a natural choice for various machine learning settings. To this end, this paper discusses open problems in TDL, ranging from practical benefits to theoretical foundations. For each problem, it outlines potential solutions and future research opportunities. At the same time, this paper serves as an invitation to the scientific community to actively participate in TDL research to unlock the potential of this emerging field.

Federico Barbero, Álvaro Arroyo, Xiangming Gu et al. · deepmind

Large Language Models (LLMs) tend to attend heavily to the first token in the sequence -- creating a so-called attention sink. Many works have studied this phenomenon in detail, proposing various ways to either leverage or alleviate it. Attention sinks have been connected to quantisation difficulties, security issues, and streaming attention. Yet, while many works have provided conditions in which they occur or not, a critical question remains shallowly answered: Why do LLMs learn such patterns and how are they being used? In this work, we argue theoretically and empirically that this mechanism provides a method for LLMs to avoid over-mixing, connecting this to existing lines of work that study mathematically how information propagates in Transformers. We conduct experiments to validate our theoretical intuitions and show how choices such as context length, depth, and data packing influence the sink behaviour. We hope that this study provides a new practical perspective on why attention sinks are useful in LLMs, leading to a better understanding of the attention patterns that form during training.

John Schultz, Jakub Adamek, Matej Jusup et al. · deepmind

Advancing planning and reasoning capabilities of Large Language Models (LLMs) is one of the key prerequisites towards unlocking their potential for performing reliably in complex and impactful domains. In this paper, we aim to demonstrate this across board games (Chess, Fischer Random / Chess960, Connect Four, and Hex), and we show that search-based planning can yield significant improvements in LLM game-playing strength. We introduce, compare and contrast two major approaches: In external search, the model guides Monte Carlo Tree Search (MCTS) rollouts and evaluations without calls to an external game engine, and in internal search, the model is trained to generate in-context a linearized tree of search and a resulting final choice. Both build on a language model pre-trained on relevant domain knowledge, reliably capturing the transition and value functions in the respective environments, with minimal hallucinations. We evaluate our LLM search implementations against game-specific state-of-the-art engines, showcasing substantial improvements in strength over the base model, and reaching Grandmaster-level performance in chess while operating closer to the human search budget. Our proposed approach, combining search with domain knowledge, is not specific to board games, hinting at more general future applications.

Bruno Gavranović, Paul Lessard, Andrew Dudzik et al.

We present our position on the elusive quest for a general-purpose framework for specifying and studying deep learning architectures. Our opinion is that the key attempts made so far lack a coherent bridge between specifying constraints which models must satisfy and specifying their implementations. Focusing on building a such a bridge, we propose to apply category theory -- precisely, the universal algebra of monads valued in a 2-category of parametric maps -- as a single theory elegantly subsuming both of these flavours of neural network design. To defend our position, we show how this theory recovers constraints induced by geometric deep learning, as well as implementations of many architectures drawn from the diverse landscape of neural networks, such as RNNs. We also illustrate how the theory naturally encodes many standard constructs in computer science and automata theory.

Petar Veličković, Alex Vitvitskyi, Larisa Markeeva et al.

Recent years have seen a significant surge in complex AI systems for competitive programming, capable of performing at admirable levels against human competitors. While steady progress has been made, the highest percentiles still remain out of reach for these methods on standard competition platforms such as Codeforces. Here we instead focus on combinatorial competitive programming, where the target is to find as-good-as-possible solutions to otherwise computationally intractable problems, over specific given inputs. We hypothesise that this scenario offers a unique testbed for human-AI synergy, as human programmers can write a backbone of a heuristic solution, after which AI can be used to optimise the scoring function used by the heuristic. We deploy our approach on previous iterations of Hash Code, a global team programming competition inspired by NP-hard software engineering problems at Google, and we leverage FunSearch to evolve our scoring functions. Our evolved solutions significantly improve the attained scores from their baseline, successfully breaking into the top percentile on all previous Hash Code online qualification rounds, and outperforming the top human teams on several. Our method is also performant on an optimisation problem that featured in a recent held-out AtCoder contest.

Alex Vitvitskyi, João G. M. Araújo, Marc Lackenby et al.

As implied by the plethora of literature on graph rewiring, the choice of computational graph employed by a neural network can make a significant impact on its downstream performance. Certain effects related to the computational graph, such as under-reaching and over-squashing, may even render the model incapable of learning certain functions. Most of these effects have only been thoroughly studied in the domain of undirected graphs; however, recent years have seen a significant rise in interest in feedforward computational graphs: directed graphs without any back edges. In this paper, we study the desirable properties of a feedforward computational graph, discovering two important complementary measures: fidelity and mixing time, and evaluating a few popular choices of graphs through the lens of these measures. Our study is backed by both theoretical analyses of the metrics' asymptotic behaviour for various graphs, as well as correlating these metrics to the performance of trained neural network models using the corresponding graphs.

Efimia Panagiotaki, Daniele De Martini, Lars Kunze et al.

This study explores the intersection of neural networks and classical robotics algorithms through the Neural Algorithmic Reasoning (NAR) blueprint, enabling the training of neural networks to reason like classical robotics algorithms by learning to execute them. Algorithms are integral to robotics and safety-critical applications due to their predictable and consistent performance through logical and mathematical principles. In contrast, while neural networks are highly adaptable, handling complex, high-dimensional data and generalising across tasks, they often lack interpretability and transparency in their internal computations. To bridge the two, we propose a novel Graph Neural Network (GNN)-based framework, NAR-*ICP, that learns the intermediate computations of classical ICP-based registration algorithms, extending the CLRS Benchmark. We evaluate our approach across real-world and synthetic datasets, demonstrating its flexibility in handling complex inputs, and its potential to be used within larger learning pipelines. Our method achieves superior performance compared to the baselines, even surpassing the algorithms it was trained on, further demonstrating its ability to generalise beyond the capabilities of traditional algorithms.

Jason Wu, Petar Veličković

Neural networks excel at processing unstructured data but often fail to generalise out-of-distribution, whereas classical algorithms guarantee correctness but lack flexibility. We explore whether pretraining Graph Neural Networks (GNNs) on classical algorithms can improve their performance on molecular property prediction tasks from the Open Graph Benchmark: ogbg-molhiv (HIV inhibition) and ogbg-molclintox (clinical toxicity). GNNs trained on 24 classical algorithms from the CLRS Algorithmic Reasoning Benchmark are used to initialise and freeze selected layers of a second GNN for molecular prediction. Compared to a randomly initialised baseline, the pretrained models achieve consistent wins or ties, with the Segments Intersect algorithm pretraining yielding a 6% absolute gain on ogbg-molhiv and Dijkstra pretraining achieving a 3% gain on ogbg-molclintox. These results demonstrate embedding classical algorithmic priors into GNNs provides useful inductive biases, boosting performance on complex, real-world graph data.

Federico Barbero, Xiangming Gu, Christopher A. Choquette-Choo et al.

In this work, we show that it is possible to extract significant amounts of alignment training data from a post-trained model -- useful to steer the model to improve certain capabilities such as long-context reasoning, safety, instruction following, and maths. While the majority of related work on memorisation has focused on measuring success of training data extraction through string matching, we argue that embedding models are better suited for our specific goals. Distances measured through a high quality embedding model can identify semantic similarities between strings that a different metric such as edit distance will struggle to capture. In fact, in our investigation, approximate string matching would have severely undercounted (by a conservative estimate of $10\times$) the amount of data that can be extracted due to trivial artifacts that deflate the metric. Interestingly, we find that models readily regurgitate training data that was used in post-training phases such as SFT or RL. We show that this data can be then used to train a base model, recovering a meaningful amount of the original performance. We believe our work exposes a possibly overlooked risk towards extracting alignment data. Finally, our work opens up an interesting discussion on the downstream effects of distillation practices: since models seem to be regurgitating aspects of their training set, distillation can therefore be thought of as indirectly training on the model's original dataset.

Isaac Reid, Arijit Sehanobish, Cederik Höfs et al.

We introduce WIRE: Wavelet-Induced Rotary Encodings. WIRE extends Rotary Position Encodings (RoPE), a popular algorithm in LLMs and ViTs, to graph-structured data. We demonstrate that WIRE is more general than RoPE, recovering the latter in the special case of grid graphs. WIRE also enjoys a host of desirable theoretical properties, including equivariance under node ordering permutation, compatibility with linear attention, and (under select assumptions) asymptotic dependence on graph resistive distance. We test WIRE on a range of synthetic and real-world tasks, including identifying monochromatic subgraphs, semantic segmentation of point clouds, and more standard graph benchmarks. We find it to be effective in settings where the underlying graph structure is important.

Stjepan Požgaj, Dobrik Georgiev, Marin Šilić et al. · cambridge

Neural algorithmic reasoning (NAR) is a growing field that aims to embed algorithmic logic into neural networks by imitating classical algorithms. In this extended abstract, we detail our attempt to build a neural algorithmic reasoner that can solve Knapsack, a pseudo-polynomial problem bridging classical algorithms and combinatorial optimisation, but omitted in standard NAR benchmarks. Our neural algorithmic reasoner is designed to closely follow the two-phase pipeline for the Knapsack problem, which involves first constructing the dynamic programming table and then reconstructing the solution from it. The approach, which models intermediate states through dynamic programming supervision, achieves better generalization to larger problem instances than a direct-prediction baseline that attempts to select the optimal subset only from the problem inputs.

Owen Lewis, Neil Ghani, Andrew Dudzik et al.

What should a function that extrapolates beyond known input/output examples look like? This is a tricky question to answer in general, as any function matching the outputs on those examples can in principle be a correct extrapolant. We argue that a "good" extrapolant should follow certain kinds of rules, and here we study a particularly appealing criterion for rule-following in list functions: that the function should behave predictably even when certain elements are removed. In functional programming, a standard way to express such removal operations is by using a filter function. Accordingly, our paper introduces a new semantic class of functions -- the filter equivariant functions. We show that this class contains interesting examples, prove some basic theorems about it, and relate it to the well-known class of map equivariant functions. We also present a geometric account of filter equivariants, showing how they correspond naturally to certain simplicial structures. Our highlight result is the amalgamation algorithm, which constructs any filter-equivariant function's output by first studying how it behaves on sublists of the input, in a way that extrapolates perfectly.

Wilfried Bounsi, Borja Ibarz, Andrew Dudzik et al.

Transformers have revolutionized machine learning with their simple yet effective architecture. Pre-training Transformers on massive text datasets from the Internet has led to unmatched generalization for natural language understanding (NLU) tasks. However, such language models remain fragile when tasked with algorithmic forms of reasoning, where computations must be precise and robust. To address this limitation, we propose a novel approach that combines the Transformer's language understanding with the robustness of graph neural network (GNN)-based neural algorithmic reasoners (NARs). Such NARs proved effective as generic solvers for algorithmic tasks, when specified in graph form. To make their embeddings accessible to a Transformer, we propose a hybrid architecture with a two-phase training procedure, allowing the tokens in the language model to cross-attend to the node embeddings from the NAR. We evaluate our resulting TransNAR model on CLRS-Text, the text-based version of the CLRS-30 benchmark, and demonstrate significant gains over Transformer-only models for algorithmic reasoning, both in and out of distribution.

Federico Barbero, Andrea Banino, Steven Kapturowski et al.

We study how information propagates in decoder-only Transformers, which are the architectural backbone of most existing frontier large language models (LLMs). We rely on a theoretical signal propagation analysis -- specifically, we analyse the representations of the last token in the final layer of the Transformer, as this is the representation used for next-token prediction. Our analysis reveals a representational collapse phenomenon: we prove that certain distinct sequences of inputs to the Transformer can yield arbitrarily close representations in the final token. This effect is exacerbated by the low-precision floating-point formats frequently used in modern LLMs. As a result, the model is provably unable to respond to these sequences in different ways -- leading to errors in, e.g., tasks involving counting or copying. Further, we show that decoder-only Transformer language models can lose sensitivity to specific tokens in the input, which relates to the well-known phenomenon of over-squashing in graph neural networks. We provide empirical evidence supporting our claims on contemporary LLMs. Our theory also points to simple solutions towards ameliorating these issues.

Katarina Petrović, Shenyang Huang, Farimah Poursafaei et al.

Evolving relations in real-world networks are often modelled by temporal graphs. Temporal Graph Neural Networks (TGNNs) emerged to model evolutionary behaviour of such graphs by leveraging the message passing primitive at the core of Graph Neural Networks (GNNs). It is well-known that GNNs are vulnerable to several issues directly related to the input graph topology, such as under-reaching and over-squashing - we argue that these issues can often get exacerbated in temporal graphs, particularly as the result of stale nodes and edges. While graph rewiring techniques have seen frequent usage in GNNs to make the graph topology more favourable for message passing, they have not seen any mainstream usage on TGNNs. In this work, we propose Temporal Graph Rewiring (TGR), the first approach for graph rewiring on temporal graphs, to the best of our knowledge. TGR constructs message passing highways between temporally distant nodes in a continuous-time dynamic graph by utilizing expander graph propagation, a prominent framework used for graph rewiring on static graphs which makes minimal assumptions on the underlying graph structure. On the challenging TGB benchmark, TGR achieves state-of-the-art results on tgbl-review, tgbl-coin, tgbl-comment and tgbl-flight datasets at the time of writing. For tgbl-review, TGR has 50.5% improvement in MRR over the base TGN model and 22.2% improvement over the base TNCN model. The significant improvement over base models demonstrates clear benefits of temporal graph rewiring.

Marco Pegoraro, Clémentine Dominé, Emanuele Rodolà et al.

Antibody-antigen interactions play a crucial role in identifying and neutralizing harmful foreign molecules. In this paper, we investigate the optimal representation for predicting the binding sites in the two molecules and emphasize the importance of geometric information. Specifically, we compare different geometric deep learning methods applied to proteins' inner (I-GEP) and outer (O-GEP) structures. We incorporate 3D coordinates and spectral geometric descriptors as input features to fully leverage the geometric information. Our research suggests that surface-based models are more efficient than other methods, and our O-GEP experiments have achieved state-of-the-art results with significant performance improvements.

Petar Veličković

The message passing framework is the foundation of the immense success enjoyed by graph neural networks (GNNs) in recent years. In spite of its elegance, there exist many problems it provably cannot solve over given input graphs. This has led to a surge of research on going "beyond message passing", building GNNs which do not suffer from those limitations -- a term which has become ubiquitous in regular discourse. However, have those methods truly moved beyond message passing? In this position paper, I argue about the dangers of using this term -- especially when teaching graph representation learning to newcomers. I show that any function of interest we want to compute over graphs can, in all likelihood, be expressed using pairwise message passing -- just over a potentially modified graph, and argue how most practical implementations subtly do this kind of trick anyway. Hoping to initiate a productive discussion, I propose replacing "beyond message passing" with a more tame term, "augmented message passing".

Andreea Deac, Petar Veličković, Ognjen Milinković et al.

Implicit planning has emerged as an elegant technique for combining learned models of the world with end-to-end model-free reinforcement learning. We study the class of implicit planners inspired by value iteration, an algorithm that is guaranteed to yield perfect policies in fully-specified tabular environments. We find that prior approaches either assume that the environment is provided in such a tabular form -- which is highly restrictive -- or infer "local neighbourhoods" of states to run value iteration over -- for which we discover an algorithmic bottleneck effect. This effect is caused by explicitly running the planning algorithm based on scalar predictions in every state, which can be harmful to data efficiency if such scalars are improperly predicted. We propose eXecuted Latent Value Iteration Networks (XLVINs), which alleviate the above limitations. Our method performs all planning computations in a high-dimensional latent space, breaking the algorithmic bottleneck. It maintains alignment with value iteration by carefully leveraging neural graph-algorithmic reasoning and contrastive self-supervised learning. Across eight low-data settings -- including classical control, navigation and Atari -- XLVINs provide significant improvements to data efficiency against value iteration-based implicit planners, as well as relevant model-free baselines. Lastly, we empirically verify that XLVINs can closely align with value iteration.