BMOct 18, 2022
PEMP: Leveraging Physics Properties to Enhance Molecular Property PredictionYuancheng Sun, Yimeng Chen, Weizhi Ma et al.
Molecular property prediction is essential for drug discovery. In recent years, deep learning methods have been introduced to this area and achieved state-of-the-art performances. However, most of existing methods ignore the intrinsic relations between molecular properties which can be utilized to improve the performances of corresponding prediction tasks. In this paper, we propose a new approach, namely Physics properties Enhanced Molecular Property prediction (PEMP), to utilize relations between molecular properties revealed by previous physics theory and physical chemistry studies. Specifically, we enhance the training of the chemical and physiological property predictors with related physics property prediction tasks. We design two different methods for PEMP, respectively based on multi-task learning and transfer learning. Both methods include a model-agnostic molecule representation module and a property prediction module. In our implementation, we adopt both the state-of-the-art molecule embedding models under the supervised learning paradigm and the pretraining paradigm as the molecule representation module of PEMP, respectively. Experimental results on public benchmark MoleculeNet show that the proposed methods have the ability to outperform corresponding state-of-the-art models.
LGJun 5, 2023
Explore and Exploit the Diverse Knowledge in Model Zoo for Domain GeneralizationYimeng Chen, Tianyang Hu, Fengwei Zhou et al.
The proliferation of pretrained models, as a result of advancements in pretraining techniques, has led to the emergence of a vast zoo of publicly available models. Effectively utilizing these resources to obtain models with robust out-of-distribution generalization capabilities for downstream tasks has become a crucial area of research. Previous research has primarily focused on identifying the most powerful models within the model zoo, neglecting to fully leverage the diverse inductive biases contained within. This paper argues that the knowledge contained in weaker models is valuable and presents a method for leveraging the diversity within the model zoo to improve out-of-distribution generalization capabilities. Specifically, we investigate the behaviors of various pretrained models across different domains of downstream tasks by characterizing the variations in their encoded representations in terms of two dimensions: diversity shift and correlation shift. This characterization enables us to propose a new algorithm for integrating diverse pretrained models, not limited to the strongest models, in order to achieve enhanced out-of-distribution generalization performance. Our proposed method demonstrates state-of-the-art empirical results on a variety of datasets, thus validating the benefits of utilizing diverse knowledge.
LGJun 29, 2022
When Does Group Invariant Learning Survive Spurious Correlations?Yimeng Chen, Ruibin Xiong, Zhiming Ma et al.
By inferring latent groups in the training data, recent works introduce invariant learning to the case where environment annotations are unavailable. Typically, learning group invariance under a majority/minority split is empirically shown to be effective in improving out-of-distribution generalization on many datasets. However, theoretical guarantee for these methods on learning invariant mechanisms is lacking. In this paper, we reveal the insufficiency of existing group invariant learning methods in preventing classifiers from depending on spurious correlations in the training set. Specifically, we propose two criteria on judging such sufficiency. Theoretically and empirically, we show that existing methods can violate both criteria and thus fail in generalizing to spurious correlation shifts. Motivated by this, we design a new group invariant learning method, which constructs groups with statistical independence tests, and reweights samples by group label proportion to meet the criteria. Experiments on both synthetic and real data demonstrate that the new method significantly outperforms existing group invariant learning methods in generalizing to spurious correlation shifts.
AIMar 11, 2025Code
Beyond Outlining: Heterogeneous Recursive Planning for Adaptive Long-form Writing with Language ModelsRuibin Xiong, Yimeng Chen, Dmitrii Khizbullin et al.
Long-form writing agents require flexible integration and interaction across information retrieval, reasoning, and composition. Current approaches rely on predefined workflows and rigid thinking patterns to generate outlines before writing, resulting in constrained adaptability during writing. In this paper we propose WriteHERE, a general agent framework that achieves human-like adaptive writing through recursive task decomposition and dynamic integration of three fundamental task types: retrieval, reasoning, and composition. Our methodology features: 1) a planning mechanism that interleaves recursive task decomposition and execution, eliminating artificial restrictions on writing workflow; and 2) integration of task types that facilitates heterogeneous task decomposition. Evaluations on both fiction writing and technical report generation show that our method consistently outperforms state-of-the-art approaches across all automatic evaluation metrics, demonstrating the effectiveness and broad applicability of our proposed framework. We have publicly released our code and prompts to facilitate further research.
AIOct 24, 2025Code
Huxley-Gödel Machine: Human-Level Coding Agent Development by an Approximation of the Optimal Self-Improving MachineWenyi Wang, Piotr Piękos, Li Nanbo et al.
Recent studies operationalize self-improvement through coding agents that edit their own codebases. They grow a tree of self-modifications through expansion strategies that favor higher software engineering benchmark performance, assuming that this implies more promising subsequent self-modifications. However, we identify a mismatch between the agent's self-improvement potential (metaproductivity) and its coding benchmark performance, namely the Metaproductivity-Performance Mismatch. Inspired by Huxley's concept of clade, we propose a metric ($\mathrm{CMP}$) that aggregates the benchmark performances of the descendants of an agent as an indicator of its potential for self-improvement. We show that, in our self-improving coding agent development setting, access to the true $\mathrm{CMP}$ is sufficient to simulate how the Gödel Machine would behave under certain assumptions. We introduce the Huxley-Gödel Machine (HGM), which, by estimating $\mathrm{CMP}$ and using it as guidance, searches the tree of self-modifications. On SWE-bench Verified and Polyglot, HGM outperforms prior self-improving coding agent development methods while using fewer allocated CPU hours. Last but not least, HGM demonstrates strong transfer to other coding datasets and large language models. The agent optimized by HGM on SWE-bench Verified with GPT-5-mini and evaluated on SWE-bench Lite with GPT-5 achieves human-level performance, matching the best officially checked results of human-engineered coding agents. Our code is publicly available at https://github.com/metauto-ai/HGM.
CLDec 16, 2024
SepLLM: Accelerate Large Language Models by Compressing One Segment into One SeparatorGuoxuan Chen, Han Shi, Jiawei Li et al.
Large Language Models (LLMs) have exhibited exceptional performance across a spectrum of natural language processing tasks. However, their substantial sizes pose considerable challenges, particularly in computational demands and inference speed, due to their quadratic complexity. In this work, we have identified a key pattern: certain seemingly meaningless separator tokens (i.e., punctuations) contribute disproportionately to attention scores compared to semantically meaningful tokens. This observation suggests that information of the segments between these separator tokens can be effectively condensed into the separator tokens themselves without significant information loss. Guided by this insight, we introduce SepLLM, a plug-and-play framework that accelerates inference by compressing these segments and eliminating redundant tokens. Additionally, we implement efficient kernels for training acceleration. Experimental results across training-free, training-from-scratch, and post-training settings demonstrate SepLLM's effectiveness. Notably, using the Llama-3-8B backbone, SepLLM achieves over 50% reduction in KV cache on the GSM8K-CoT benchmark while maintaining comparable performance. Furthermore, in streaming settings, SepLLM effectively processes sequences of up to 4 million tokens or more while maintaining consistent language modeling capabilities.
CLMar 21, 2024
From Handcrafted Features to LLMs: A Brief Survey for Machine Translation Quality EstimationHaofei Zhao, Yilun Liu, Shimin Tao et al.
Machine Translation Quality Estimation (MTQE) is the task of estimating the quality of machine-translated text in real time without the need for reference translations, which is of great importance for the development of MT. After two decades of evolution, QE has yielded a wealth of results. This article provides a comprehensive overview of QE datasets, annotation methods, shared tasks, methodologies, challenges, and future research directions. It begins with an introduction to the background and significance of QE, followed by an explanation of the concepts and evaluation metrics for word-level QE, sentence-level QE, document-level QE, and explainable QE. The paper categorizes the methods developed throughout the history of QE into those based on handcrafted features, deep learning, and Large Language Models (LLMs), with a further division of deep learning-based methods into classic deep learning and those incorporating pre-trained language models (LMs). Additionally, the article details the advantages and limitations of each method and offers a straightforward comparison of different approaches. Finally, the paper discusses the current challenges in QE research and provides an outlook on future research directions.
CVNov 26, 2024
Efficient Multi-modal Large Language Models via Visual Token GroupingMinbin Huang, Runhui Huang, Han Shi et al.
The development of Multi-modal Large Language Models (MLLMs) enhances Large Language Models (LLMs) with the ability to perceive data formats beyond text, significantly advancing a range of downstream applications, such as visual question answering and image captioning. However, the substantial computational costs associated with processing high-resolution images and videos pose a barrier to their broader adoption. To address this challenge, compressing vision tokens in MLLMs has emerged as a promising approach to reduce inference costs. While existing methods conduct token reduction in the feature alignment phase. In this paper, we introduce VisToG, a novel grouping mechanism that leverages the capabilities of pre-trained vision encoders to group similar image segments without the need for segmentation masks. Specifically, we concatenate semantic tokens to represent image semantic segments after the linear projection layer before feeding into the vision encoder. Besides, with the isolated attention we adopt, VisToG can identify and eliminate redundant visual tokens utilizing the prior knowledge in the pre-trained vision encoder, which effectively reduces computational demands. Extensive experiments demonstrate the effectiveness of VisToG, maintaining 98.1% of the original performance while achieving a reduction of over 27\% inference time.
LGJul 21, 2025
PhysGym: Benchmarking LLMs in Interactive Physics Discovery with Controlled PriorsYimeng Chen, Piotr Piȩkos, Mateusz Ostaszewski et al.
Evaluating the scientific discovery capabilities of large language model based agents, particularly how they cope with varying environmental complexity and utilize prior knowledge, requires specialized benchmarks currently lacking in the landscape. To address this gap, we introduce \textsc{PhysGym}, a novel benchmark suite and simulation platform for rigorously assessing LLM-based scientific reasoning in interactive physics environments. \textsc{PhysGym}'s primary contribution lies in its sophisticated control over the level of prior knowledge provided to the agent. This allows researchers to dissect agent performance along axes including the complexity of the problem and the prior knowledge levels. The benchmark comprises a suite of interactive simulations, where agents must actively probe environments, gather data sequentially under constraints and formulate hypotheses about underlying physical laws. \textsc{PhysGym} provides standardized evaluation protocols and metrics for assessing hypothesis accuracy and model fidelity. We demonstrate the benchmark's utility by presenting results from baseline LLMs, showcasing its ability to differentiate capabilities based on varying priors and task complexity.
HCJul 1, 2025
Customer Service Representative's Perception of the AI Assistant in an Organization's Call CenterKai Qin, Kexin Du, Yimeng Chen et al.
The integration of various AI tools creates a complex socio-technical environment where employee-customer interactions form the core of work practices. This study investigates how customer service representatives (CSRs) at the power grid service customer service call center perceive AI assistance in their interactions with customers. Through a field visit and semi-structured interviews with 13 CSRs, we found that AI can alleviate some traditional burdens during the call (e.g., typing and memorizing) but also introduces new burdens (e.g., earning, compliance, psychological burdens). This research contributes to a more nuanced understanding of AI integration in organizational settings and highlights the efforts and burdens undertaken by CSRs to adapt to the updated system.
CLDec 22, 2021
Joint-training on Symbiosis Networks for Deep Nueral Machine Translation modelsZhengzhe Yu, Jiaxin Guo, Minghan Wang et al.
Deep encoders have been proven to be effective in improving neural machine translation (NMT) systems, but it reaches the upper bound of translation quality when the number of encoder layers exceeds 18. Worse still, deeper networks consume a lot of memory, making it impossible to train efficiently. In this paper, we present Symbiosis Networks, which include a full network as the Symbiosis Main Network (M-Net) and another shared sub-network with the same structure but less layers as the Symbiotic Sub Network (S-Net). We adopt Symbiosis Networks on Transformer-deep (m-n) architecture and define a particular regularization loss $\mathcal{L}_τ$ between the M-Net and S-Net in NMT. We apply joint-training on the Symbiosis Networks and aim to improve the M-Net performance. Our proposed training strategy improves Transformer-deep (12-6) by 0.61, 0.49 and 0.69 BLEU over the baselines under classic training on WMT'14 EN->DE, DE->EN and EN->FR tasks. Furthermore, our Transformer-deep (12-6) even outperforms classic Transformer-deep (18-6).
CLDec 22, 2021
Self-Distillation Mixup Training for Non-autoregressive Neural Machine TranslationJiaxin Guo, Minghan Wang, Daimeng Wei et al.
Recently, non-autoregressive (NAT) models predict outputs in parallel, achieving substantial improvements in generation speed compared to autoregressive (AT) models. While performing worse on raw data, most NAT models are trained as student models on distilled data generated by AT teacher models, which is known as sequence-level Knowledge Distillation. An effective training strategy to improve the performance of AT models is Self-Distillation Mixup (SDM) Training, which pre-trains a model on raw data, generates distilled data by the pre-trained model itself and finally re-trains a model on the combination of raw data and distilled data. In this work, we aim to view SDM for NAT models, but find directly adopting SDM to NAT models gains no improvements in terms of translation quality. Through careful analysis, we observe the invalidation is correlated to Modeling Diversity and Confirmation Bias between the AT teacher model and the NAT student models. Based on these findings, we propose an enhanced strategy named SDMRT by adding two stages to classic SDM: one is Pre-Rerank on self-distilled data, the other is Fine-Tune on Filtered teacher-distilled data. Our results outperform baselines by 0.6 to 1.2 BLEU on multiple NAT models. As another bonus, for Iterative Refinement NAT models, our methods can outperform baselines within half iteration number, which means 2X acceleration.
CLDec 22, 2021
Diformer: Directional Transformer for Neural Machine TranslationMinghan Wang, Jiaxin Guo, Yuxia Wang et al.
Autoregressive (AR) and Non-autoregressive (NAR) models have their own superiority on the performance and latency, combining them into one model may take advantage of both. Current combination frameworks focus more on the integration of multiple decoding paradigms with a unified generative model, e.g. Masked Language Model. However, the generalization can be harmful to the performance due to the gap between training objective and inference. In this paper, we aim to close the gap by preserving the original objective of AR and NAR under a unified framework. Specifically, we propose the Directional Transformer (Diformer) by jointly modelling AR and NAR into three generation directions (left-to-right, right-to-left and straight) with a newly introduced direction variable, which works by controlling the prediction of each token to have specific dependencies under that direction. The unification achieved by direction successfully preserves the original dependency assumption used in AR and NAR, retaining both generalization and performance. Experiments on 4 WMT benchmarks demonstrate that Diformer outperforms current united-modelling works with more than 1.5 BLEU points for both AR and NAR decoding, and is also competitive to the state-of-the-art independent AR and NAR models.
LGNov 7, 2021
Uncertainty Calibration for Ensemble-Based Debiasing MethodsRuibin Xiong, Yimeng Chen, Liang Pang et al.
Ensemble-based debiasing methods have been shown effective in mitigating the reliance of classifiers on specific dataset bias, by exploiting the output of a bias-only model to adjust the learning target. In this paper, we focus on the bias-only model in these ensemble-based methods, which plays an important role but has not gained much attention in the existing literature. Theoretically, we prove that the debiasing performance can be damaged by inaccurate uncertainty estimations of the bias-only model. Empirically, we show that existing bias-only models fall short in producing accurate uncertainty estimations. Motivated by these findings, we propose to conduct calibration on the bias-only model, thus achieving a three-stage ensemble-based debiasing framework, including bias modeling, model calibrating, and debiasing. Experimental results on NLI and fact verification tasks show that our proposed three-stage debiasing framework consistently outperforms the traditional two-stage one in out-of-distribution accuracy.