Gregory D. Larsen

Kangning Cui, Rongkun Zhu, Manqi Wang et al.

Palms are ecologically and economically indicators of tropical forest health, biodiversity, and human impact that support local economies and global forest product supply chains. While palm detection in plantations is well-studied, efforts to map naturally occurring palms in dense forests remain limited by overlapping crowns, uneven shading, and heterogeneous landscapes. We develop PRISM (Processing, Inference, Segmentation, and Mapping), a flexible pipeline for detecting and localizing palms in dense tropical forests using large orthomosaic images. Orthomosaics are created from thousands of aerial images and spanning several to hundreds of gigabytes. Our contributions are threefold. First, we construct a large UAV-derived orthomosaic dataset collected across 21 ecologically diverse sites in western Ecuador, annotated with 8,830 bounding boxes and 5,026 palm center points. Second, we evaluate multiple state-of-the-art object detectors based on efficiency and performance, integrating zero-shot SAM 2 as the segmentation backbone, and refining the results for precise geographic mapping. Third, we apply calibration methods to align confidence scores with IoU and explore saliency maps for feature explainability. Though optimized for palms, PRISM is adaptable for identifying other natural objects, such as eastern white pines. Future work will explore transfer learning for lower-resolution datasets (0.5 to 1m).

Kangning Cui, Wei Tang, Rongkun Zhu et al.

Understanding the spatial distribution of palms within tropical forests is essential for effective ecological monitoring, conservation strategies, and the sustainable integration of natural forest products into local and global supply chains. However, the analysis of remotely sensed data in these environments faces significant challenges, such as overlapping palm and tree crowns, uneven shading across the canopy surface, and the heterogeneous nature of the forest landscapes, which often affect the performance of palm detection and segmentation algorithms. To overcome these issues, we introduce PalmDSNet, a deep learning framework for real-time detection, segmentation, and counting of canopy palms. Additionally, we employ a bimodal reproduction algorithm that simulates palm spatial propagation to further enhance the understanding of these point patterns using PalmDSNet's results. We used UAV-captured imagery to create orthomosaics from 21 sites across western Ecuadorian tropical forests, covering a gradient from the everwet Chocó forests near Colombia to the drier forests of southwestern Ecuador. Expert annotations were used to create a comprehensive dataset, including 7,356 bounding boxes on image patches and 7,603 palm centers across five orthomosaics, encompassing a total area of 449 hectares. By combining PalmDSNet with the bimodal reproduction algorithm, which optimizes parameters for both local and global spatial variability, we effectively simulate the spatial distribution of palms in diverse and dense tropical environments, validating its utility for advanced applications in tropical forest monitoring and remote sensing analysis.

Jiayi Zhou, Günel Aghakishiyeva, Saagar Arya et al.

Computer vision can accelerate ecological research and conservation monitoring, yet adoption in ecology lags in part because of a lack of trust in black-box neural-network-based models. We seek to address this challenge by applying post-hoc explanations to provide evidence for predictions and document limitations that are important to field deployment. Using aerial imagery from Glacier Bay National Park, we train a Faster R-CNN to detect pinnipeds (harbor seals) and generate explanations via gradient-based class activation mapping (HiResCAM, LayerCAM), local interpretable model-agnostic explanations (LIME), and perturbation-based explanations. We assess explanations along three axes relevant to field use: (i) localization fidelity: whether high-attribution regions coincide with the animal rather than background context; (ii) faithfulness: whether deletion/insertion tests produce changes in detector confidence; and (iii) diagnostic utility: whether explanations reveal systematic failure modes. Explanations concentrate on seal torsos and contours rather than surrounding ice/rock, and removal of the seals reduces detection confidence, providing model-evidence for true positives. The analysis also uncovers recurrent error sources, including confusion between seals and black ice and rocks. We translate these findings into actionable next steps for model development, including more targeted data curation and augmentation. By pairing object detection with post-hoc explainability, we can move beyond "black-box" predictions toward auditable, decision-supporting tools for conservation monitoring.

Günel Aghakishiyeva, Jiayi Zhou, Saagar Arya et al.

Ecological monitoring is increasingly automated by vision models, yet opaque predictions limit trust and field adoption. We present an inpainting-guided, perturbation-based explanation technique that produces photorealistic, mask-localized edits that preserve scene context. Unlike masking or blurring, these edits stay in-distribution and reveal which fine-grained morphological cues drive predictions in tasks such as species recognition and trait attribution. We demonstrate the approach on a YOLOv9 detector fine-tuned for harbor seal detection in Glacier Bay drone imagery, using Segment-Anything-Model-refined masks to support two interventions: (i) object removal/replacement (e.g., replacing seals with plausible ice/water or boats) and (ii) background replacement with original animals composited onto new scenes. Explanations are assessed by re-scoring perturbed images (flip rate, confidence drop) and by expert review for ecological plausibility and interpretability. The resulting explanations localize diagnostic structures, avoid deletion artifacts common to traditional perturbations, and yield domain-relevant insights that support expert validation and more trustworthy deployment of AI in ecology.