Gamze Gürsoy

Chao Pang, Xinzhuo Jiang, Nishanth Parameshwar Pavinkurve et al.

Synthetic Electronic Health Records (EHR) have emerged as a pivotal tool in advancing healthcare applications and machine learning models, particularly for researchers without direct access to healthcare data. Although existing methods, like rule-based approaches and generative adversarial networks (GANs), generate synthetic data that resembles real-world EHR data, these methods often use a tabular format, disregarding temporal dependencies in patient histories and limiting data replication. Recently, there has been a growing interest in leveraging Generative Pre-trained Transformers (GPT) for EHR data. This enables applications like disease progression analysis, population estimation, counterfactual reasoning, and synthetic data generation. In this work, we focus on synthetic data generation and demonstrate the capability of training a GPT model using a particular patient representation derived from CEHR-BERT, enabling us to generate patient sequences that can be seamlessly converted to the Observational Medical Outcomes Partnership (OMOP) data format.

Ahmed Elhussein, Gamze Gürsoy

Non-identically distributed data is a major challenge in Federated Learning (FL). Personalized FL tackles this by balancing local model adaptation with global model consistency. One variant, partial FL, leverages the observation that early layers learn more transferable features by federating only early layers. However, current partial FL approaches use predetermined, architecture-specific rules to select layers, limiting their applicability. We introduce Principled Layer-wise-FL (PLayer-FL), which uses a novel federation sensitivity metric to identify layers that benefit from federation. This metric, inspired by model pruning, quantifies each layer's contribution to cross-client generalization after the first training epoch, identifying a transition point in the network where the benefits of federation diminish. We first demonstrate that our federation sensitivity metric shows strong correlation with established generalization measures across diverse architectures. Next, we show that PLayer-FL outperforms existing FL algorithms on a range of tasks, also achieving more uniform performance improvements across clients.

Yuxiao Chen, Gamze Gürsoy, Qi Lei

Federated Learning (FL) is designed to prevent data leakage through collaborative model training without centralized data storage. However, it remains vulnerable to gradient reconstruction attacks that recover original training data from shared gradients. To optimize the trade-off between data leakage and utility loss, we first derive a theoretical lower bound of reconstruction error (among all attackers) for the two standard methods: adding noise, and gradient pruning. We then customize these two defenses to be parameter- and model-specific and achieve the optimal trade-off between our obtained reconstruction lower bound and model utility. Experimental results validate that our methods outperform Gradient Noise and Gradient Pruning by protecting the training data better while also achieving better utility.