Patrick Bouthemy

Etienne Meunier, Patrick Bouthemy

Human beings have the ability to continuously analyze a video and immediately extract the motion components. We want to adopt this paradigm to provide a coherent and stable motion segmentation over the video sequence. In this perspective, we propose a novel long-term spatio-temporal model operating in a totally unsupervised way. It takes as input the volume of consecutive optical flow (OF) fields, and delivers a volume of segments of coherent motion over the video. More specifically, we have designed a transformer-based network, where we leverage a mathematically well-founded framework, the Evidence Lower Bound (ELBO), to derive the loss function. The loss function combines a flow reconstruction term involving spatio-temporal parametric motion models combining, in a novel way, polynomial (quadratic) motion models for the spatial dimensions and B-splines for the time dimension of the video sequence, and a regularization term enforcing temporal consistency on the segments. We report experiments on four VOS benchmarks, demonstrating competitive quantitative results, while performing motion segmentation on a whole sequence in one go. We also highlight through visual results the key contributions on temporal consistency brought by our method.

Yasmine Hachani, Patrick Bouthemy, Elisa Fromont et al.

Accurate selection of bovine embryos is a challenging task, as current practice relies on a single expert assessment on the seventh day after insemination, resulting in high rates of pregnancy loss. Time-lapse videomicroscopy provides detailed information on early development, but is difficult to exploit because of complex motion patterns and time-consuming analysis. We propose TransFACT, a transformer-based framework for modeling early developmental stages and embryo transferability using 2D time-lapse videos from the first four days of development. TransFACT combines frame-level temporal features with stage-level representations, using developmental stages as auxiliary supervision to predict transferability on day four. Our experiments demonstrate that TransFACT, by leveraging an existing method designed for action recognition, achieves superior performance than its competitor in predicting embryo transferability.

Yasmine Hachani, Patrick Bouthemy, Elisa Fromont et al.

Videomicroscopy is a promising tool combined with machine learning for studying the early development of in vitro fertilized bovine embryos and assessing its transferability as soon as possible. We aim to predict the embryo transferability within four days at most, taking 2D time-lapse microscopy videos as input. We formulate this problem as a supervised binary classification problem for the classes transferable and not transferable. The challenges are three-fold: 1) poorly discriminating appearance and motion, 2) class ambiguity, 3) small amount of annotated data. We propose a 3D convolutional neural network involving three pathways, which makes it multi-scale in time and able to handle appearance and motion in different ways. For training, we retain the focal loss. Our model, named SFR, compares favorably to other methods. Experiments demonstrate its effectiveness and accuracy for our challenging biological task.

Yasmine Hachani, Patrick Bouthemy, Elisa Fromont et al.

Video microscopy, when combined with machine learning, offers a promising approach for studying the early development of in vitro produced (IVP) embryos. However, manually annotating developmental events, and more specifically cell divisions, is time-consuming for a biologist and cannot scale up for practical applications. We aim to automatically classify the cell stages of embryos from 2D time-lapse microscopy videos with a deep learning approach. We focus on the analysis of bovine embryonic development using video microscopy, as we are primarily interested in the application of cattle breeding, and we have created a Bovine Embryos Cell Stages (ECS) dataset. The challenges are three-fold: (1) low-quality images and bovine dark cells that make the identification of cell stages difficult, (2) class ambiguity at the boundaries of developmental stages, and (3) imbalanced data distribution. To address these challenges, we introduce CLEmbryo, a novel method that leverages supervised contrastive learning combined with focal loss for training, and the lightweight 3D neural network CSN-50 as an encoder. We also show that our method generalizes well. CLEmbryo outperforms state-of-the-art methods on both our Bovine ECS dataset and the publicly available NYU Mouse Embryos dataset.

Etienne Meunier, Anaïs Badoual, Patrick Bouthemy

In this paper, we present a CNN-based fully unsupervised method for motion segmentation from optical flow. We assume that the input optical flow can be represented as a piecewise set of parametric motion models, typically, affine or quadratic motion models. The core idea of our work is to leverage the Expectation-Maximization (EM) framework in order to design in a well-founded manner a loss function and a training procedure of our motion segmentation neural network that does not require either ground-truth or manual annotation. However, in contrast to the classical iterative EM, once the network is trained, we can provide a segmentation for any unseen optical flow field in a single inference step and without estimating any motion models. We investigate different loss functions including robust ones and propose a novel efficient data augmentation technique on the optical flow field, applicable to any network taking optical flow as input. In addition, our method is able by design to segment multiple motions. Our motion segmentation network was tested on four benchmarks, DAVIS2016, SegTrackV2, FBMS59, and MoCA, and performed very well, while being fast at test time.

Juan-Manuel Perez-Rua, Tomas Crivelli, Patrick Bouthemy et al.

Polynomial regression is a recurrent problem with a large number of applications. In computer vision it often appears in motion analysis. Whatever the application, standard methods for regression of polynomial models tend to deliver biased results when the input data is heavily contaminated by outliers. Moreover, the problem is even harder when outliers have strong structure. Departing from problem-tailored heuristics for robust estimation of parametric models, we explore deep convolutional neural networks. Our work aims to find a generic approach for training deep regression models without the explicit need of supervised annotation. We bypass the need for a tailored loss function on the regression parameters by attaching to our model a differentiable hard-wired decoder corresponding to the polynomial operation at hand. We demonstrate the value of our findings by comparing with standard robust regression methods. Furthermore, we demonstrate how to use such models for a real computer vision problem, i.e., video stabilization. The qualitative and quantitative experiments show that neural networks are able to learn robustness for general polynomial regression, with results that well overpass scores of traditional robust estimation methods.

Mihir Jain, Jan van Gemert, Hervé Jégou et al.

This paper considers the problem of localizing actions in videos as a sequences of bounding boxes. The objective is to generate action proposals that are likely to include the action of interest, ideally achieving high recall with few proposals. Our contributions are threefold. First, inspired by selective search for object proposals, we introduce an approach to generate action proposals from spatiotemporal super-voxels in an unsupervised manner, we call them Tubelets. Second, along with the static features from individual frames our approach advantageously exploits motion. We introduce independent motion evidence as a feature to characterize how the action deviates from the background and explicitly incorporate such motion information in various stages of the proposal generation. Finally, we introduce spatiotemporal refinement of Tubelets, for more precise localization of actions, and pruning to keep the number of Tubelets limited. We demonstrate the suitability of our approach by extensive experiments for action proposal quality and action localization on three public datasets: UCF Sports, MSR-II and UCF101. For action proposal quality, our unsupervised proposals beat all other existing approaches on the three datasets. For action localization, we show top performance on both the trimmed videos of UCF Sports and UCF101 as well as the untrimmed videos of MSR-II.

Denis Fortun, Patrick Bouthemy, Charles Kervrann

Handling all together large displacements, motion details and occlusions remains an open issue for reliable computation of optical flow in a video sequence. We propose a two-step aggregation paradigm to address this problem. The idea is to supply local motion candidates at every pixel in a first step, and then to combine them to determine the global optical flow field in a second step. We exploit local parametric estimations combined with patch correspondences and we experimentally demonstrate that they are sufficient to produce highly accurate motion candidates. The aggregation step is designed as the discrete optimization of a global regularized energy. The occlusion map is estimated jointly with the flow field throughout the two steps. We propose a generic exemplar-based approach for occlusion filling with motion vectors. We achieve state-of-the-art results in computer vision benchmarks, with particularly significant improvements in the case of large displacements and occlusions.