Roque Lopez

Roque Lopez, Yurong Liu, Christos Koutras et al.

Data harmonization remains a major bottleneck for integrative analysis due to heterogeneity in schemas, value representations, and domain-specific conventions. BDI-Kit provides an extensible toolkit for schema and value matching. It exposes two complementary interfaces tailored to different user needs: a Python API enabling developers to construct harmonization pipelines programmatically, and an AI-assisted chat interface allowing domain experts to harmonize data through natural language dialogue. This demonstration showcases how users interact with BDI-Kit to iteratively explore, validate, and refine schema and value matches through a combination of automated matching, AI-assisted reasoning, and user-driven refinement. We present two scenarios: (i) using the Python API to programmatically compose primitives, examine intermediate outputs, and reuse transformations; and (ii) conversing with the AI assistant in natural language to access BDI-Kit's capabilities and iteratively refine outputs based on the assistant's suggestions.

Aécio Santos, Eduardo H. M. Pena, Roque Lopez et al.

Data harmonization is an essential task that entails integrating datasets from diverse sources. Despite years of research in this area, it remains a time-consuming and challenging task due to schema mismatches, varying terminologies, and differences in data collection methodologies. This paper presents the case for agentic data harmonization as a means to both empower experts to harmonize their data and to streamline the process. We introduce Harmonia, a system that combines LLM-based reasoning, an interactive user interface, and a library of data harmonization primitives to automate the synthesis of data harmonization pipelines. We demonstrate Harmonia in a clinical data harmonization scenario, where it helps to interactively create reusable pipelines that map datasets to a standard format. Finally, we discuss challenges and open problems, and suggest research directions for advancing our vision.

Jorge Piazentin Ono, Sonia Castelo, Roque Lopez et al.

In recent years, a wide variety of automated machine learning (AutoML) methods have been proposed to search and generate end-to-end learning pipelines. While these techniques facilitate the creation of models for real-world applications, given their black-box nature, the complexity of the underlying algorithms, and the large number of pipelines they derive, it is difficult for their developers to debug these systems. It is also challenging for machine learning experts to select an AutoML system that is well suited for a given problem or class of problems. In this paper, we present the PipelineProfiler, an interactive visualization tool that allows the exploration and comparison of the solution space of machine learning (ML) pipelines produced by AutoML systems. PipelineProfiler is integrated with Jupyter Notebook and can be used together with common data science tools to enable a rich set of analyses of the ML pipelines and provide insights about the algorithms that generated them. We demonstrate the utility of our tool through several use cases where PipelineProfiler is used to better understand and improve a real-world AutoML system. Furthermore, we validate our approach by presenting a detailed analysis of a think-aloud experiment with six data scientists who develop and evaluate AutoML tools.