Chaofan Chen

Huaihai Lyu, Chaofan Chen, Mingyu Cao et al.

Achieving robust generalization from limited data is a central challenge in embodied intelligence. Prevailing methods fail by regressing absolute coordinates, which violates the principle of general covariance. Fundamentally, this conflates the intrinsic task geometry with rigid execution patterns, binding policies to specific motion styles and fixed speeds. To resolve this, we propose the Generalized Action Manifold (GAM) framework that enforces general covariance through structural disentanglement. Specifically, GAM realizes the manifold by enforcing invariance across two orthogonal dimensions: (1) Temporal Invariance, utilizing an Arc-Length Parameterizer to orthogonalize the spatial path geometry from temporal dynamics, ensuring robustness to velocity variations; (2) Geometric Invariance, where a Schema-Affine-Factorization mechanism maps trajectories to canonical ``world lines'' in a pose-normalized coordinate frame. This distinguishes invariant geometric schemas from affine modulations, ensuring spatial generalizability. By integrating GAM within a structured Vision-Language-Action (VLA) architecture, we enable sparse demonstrations to densely populate a continuous, valid action manifold. Empirical results demonstrate that GAM enables superior transfer and robustness capabilities, outperforming geometry-agnostic baselines.

Chiyu Ma, Brandon Zhao, Chaofan Chen et al.

We present ProtoConcepts, a method for interpretable image classification combining deep learning and case-based reasoning using prototypical parts. Existing work in prototype-based image classification uses a ``this looks like that'' reasoning process, which dissects a test image by finding prototypical parts and combining evidence from these prototypes to make a final classification. However, all of the existing prototypical part-based image classifiers provide only one-to-one comparisons, where a single training image patch serves as a prototype to compare with a part of our test image. With these single-image comparisons, it can often be difficult to identify the underlying concept being compared (e.g., ``is it comparing the color or the shape?''). Our proposed method modifies the architecture of prototype-based networks to instead learn prototypical concepts which are visualized using multiple image patches. Having multiple visualizations of the same prototype allows us to more easily identify the concept captured by that prototype (e.g., ``the test image and the related training patches are all the same shade of blue''), and allows our model to create richer, more interpretable visual explanations. Our experiments show that our ``this looks like those'' reasoning process can be applied as a modification to a wide range of existing prototypical image classification networks while achieving comparable accuracy on benchmark datasets.

Jon Donnelly, Alina Jade Barnett, Chaofan Chen

We present a deformable prototypical part network (Deformable ProtoPNet), an interpretable image classifier that integrates the power of deep learning and the interpretability of case-based reasoning. This model classifies input images by comparing them with prototypes learned during training, yielding explanations in the form of "this looks like that." However, while previous methods use spatially rigid prototypes, we address this shortcoming by proposing spatially flexible prototypes. Each prototype is made up of several prototypical parts that adaptively change their relative spatial positions depending on the input image. Consequently, a Deformable ProtoPNet can explicitly capture pose variations and context, improving both model accuracy and the richness of explanations provided. Compared to other case-based interpretable models using prototypes, our approach achieves state-of-the-art accuracy and gives an explanation with greater context. The code is available at https://github.com/jdonnelly36/Deformable-ProtoPNet.

Chiyu Ma, Jon Donnelly, Wenjun Liu et al.

We present ProtoViT, a method for interpretable image classification combining deep learning and case-based reasoning. This method classifies an image by comparing it to a set of learned prototypes, providing explanations of the form ``this looks like that.'' In our model, a prototype consists of \textit{parts}, which can deform over irregular geometries to create a better comparison between images. Unlike existing models that rely on Convolutional Neural Network (CNN) backbones and spatially rigid prototypes, our model integrates Vision Transformer (ViT) backbones into prototype based models, while offering spatially deformed prototypes that not only accommodate geometric variations of objects but also provide coherent and clear prototypical feature representations with an adaptive number of prototypical parts. Our experiments show that our model can generally achieve higher performance than the existing prototype based models. Our comprehensive analyses ensure that the prototypes are consistent and the interpretations are faithful.

Jon Donnelly, Zhicheng Guo, Alina Jade Barnett et al.

Interpretability is critical for machine learning models in high-stakes settings because it allows users to verify the model's reasoning. In computer vision, prototypical part models (ProtoPNets) have become the dominant model type to meet this need. Users can easily identify flaws in ProtoPNets, but fixing problems in a ProtoPNet requires slow, difficult retraining that is not guaranteed to resolve the issue. This problem is called the "interaction bottleneck." We solve the interaction bottleneck for ProtoPNets by simultaneously finding many equally good ProtoPNets (i.e., a draw from a "Rashomon set"). We show that our framework - called Proto-RSet - quickly produces many accurate, diverse ProtoPNets, allowing users to correct problems in real time while maintaining performance guarantees with respect to the training set. We demonstrate the utility of this method in two settings: 1) removing synthetic bias introduced to a bird identification model and 2) debugging a skin cancer identification model. This tool empowers non-machine-learning experts, such as clinicians or domain experts, to quickly refine and correct machine learning models without repeated retraining by machine learning experts.

Huaihai Lyu, Chaofan Chen, Yuheng Ji et al.

Driven by the increasing demand for applications in augmented and virtual reality, egocentric action recognition has emerged as a prominent research area. It is typically divided into two subtasks: recognizing the performed behavior (i.e., verb component) and identifying the objects being acted upon (i.e., noun component) from the first-person perspective. However, most existing approaches treat these two components as independent classification tasks, focusing on extracting component-specific knowledge while overlooking their inherent semantic and contextual relationships, leading to fragmented representations and sub-optimal generalization capability. To address these challenges, we propose a prompt learning-based framework, EgoPrompt, to conduct the egocentric action recognition task. Building on the existing prompting strategy to capture the component-specific knowledge, we construct a Unified Prompt Pool space to establish interaction between the two types of component representations. Specifically, the component representations (from verbs and nouns) are first decomposed into fine-grained patterns with the prompt pair form. Then, these pattern-level representations are fused through an attention-based mechanism to facilitate cross-component interaction. To ensure the prompt pool is informative, we further introduce a novel training objective, Diverse Pool Criteria. This objective realizes our goals from two perspectives: Prompt Selection Frequency Regularization and Prompt Knowledge Orthogonalization. Extensive experiments are conducted on the Ego4D, EPIC-Kitchens, and EGTEA datasets. The results consistently show that EgoPrompt achieves state-of-the-art performance across within-dataset, cross-dataset, and base-to-novel generalization benchmarks.

Huaihai Lyu, Chaofan Chen, Senwei Xie et al.

Existing Vision-Language-Action (VLA) models can be broadly categorized into diffusion-based and auto-regressive (AR) approaches: diffusion models capture continuous action distributions but rely on computationally heavy iterative denoising. In contrast, AR models enable efficient optimization and flexible sequence construction, making them better suited for large-scale pretraining. To further improve AR efficiency, particularly when action chunks induce extended and high-dimensional sequences, prior work applies entropy-guided and token-frequency techniques to shorten the sequence length. However, such compression struggled with \textit{poor reconstruction or inefficient compression}. Motivated by this, we introduce an Omni Swift Action Tokenizer, which learns a compact, transferable action representation. Specifically, we first normalize value ranges and temporal horizons to obtain a consistent representation with B-Spline encoding. Then, we apply multi-stage residual quantization to the position, rotation, and gripper subspaces, producing compressed discrete tokens with coarse-to-fine granularity for each part. After pre-training on the large-scale dataset Droid, the resulting discrete tokenization shortens the training sequence by 6.8$\times$, and lowers the target entropy. To further explore the potential of OmniSAT, we develop a cross-embodiment learning strategy that builds on the unified action-pattern space and jointly leverages robot and human demonstrations. It enables scalable auxiliary supervision from heterogeneous egocentric videos. Across diverse real-robot and simulation experiments, OmniSAT encompasses higher compression while preserving reconstruction quality, enabling faster AR training convergence and model performance.

Muchang Bahng, Charlie Berens, Jon Donnelly et al.

Species detection is important for monitoring the health of ecosystems and identifying invasive species, serving a crucial role in guiding conservation efforts. Multimodal neural networks have seen increasing use for identifying species to help automate this task, but they have two major drawbacks. First, their black-box nature prevents the interpretability of their decision making process. Second, collecting genetic data is often expensive and requires invasive procedures, often necessitating researchers to capture or kill the target specimen. We address both of these problems by extending prototype networks (ProtoPNets), which are a popular and interpretable alternative to traditional neural networks, to the multimodal, cost-aware setting. We ensemble prototypes from each modality, using an associated weight to determine how much a given prediction relies on each modality. We further introduce methods to identify cases for which we do not need the expensive genetic information to make confident predictions. We demonstrate that our approach can intelligently allocate expensive genetic data for fine-grained distinctions while using abundant image data for clearer visual classifications and achieving comparable accuracy to models that consistently use both modalities.

Jiayi Zou, Chaofan Chen, Bing-Kun Bao et al.

Egocentric Video Question Answering (Egocentric VideoQA) plays an important role in egocentric video understanding, which refers to answering questions based on first-person videos. Although existing methods have made progress through the paradigm of pre-training and fine-tuning, they ignore the unique challenges posed by the first-person perspective, such as understanding multiple events and recognizing hand-object interactions. To deal with these challenges, we propose a Dual-Modal Counterfactual Contrastive Construction (DMC$^3$) framework, which contains an egocentric videoqa baseline, a counterfactual sample construction module and a counterfactual sample-involved contrastive optimization. Specifically, We first develop a counterfactual sample construction module to generate positive and negative samples for textual and visual modalities through event description paraphrasing and core interaction mining, respectively. Then, We feed these samples together with the original samples into the baseline. Finally, in the counterfactual sample-involved contrastive optimization module, we apply contrastive loss to minimize the distance between the original sample features and the positive sample features, while maximizing the distance from the negative samples. Experiments show that our method achieve 52.51\% and 46.04\% on the \textit{normal} and \textit{indirect} splits of EgoTaskQA, and 13.2\% on QAEGO4D, both reaching the state-of-the-art performance.

Julia Yang, Alina Jade Barnett, Jon Donnelly et al.

Digital mammography is essential to breast cancer detection, and deep learning offers promising tools for faster and more accurate mammogram analysis. In radiology and other high-stakes environments, uninterpretable ("black box") deep learning models are unsuitable and there is a call in these fields to make interpretable models. Recent work in interpretable computer vision provides transparency to these formerly black boxes by utilizing prototypes for case-based explanations, achieving high accuracy in applications including mammography. However, these models struggle with precise feature localization, reasoning on large portions of an image when only a small part is relevant. This paper addresses this gap by proposing a novel multi-scale interpretable deep learning model for mammographic mass margin classification. Our contribution not only offers an interpretable model with reasoning aligned with radiologist practices, but also provides a general architecture for computer vision with user-configurable prototypes from coarse- to fine-grained prototypes.

Alina Jade Barnett, Fides Regina Schwartz, Chaofan Tao et al.

When we deploy machine learning models in high-stakes medical settings, we must ensure these models make accurate predictions that are consistent with known medical science. Inherently interpretable networks address this need by explaining the rationale behind each decision while maintaining equal or higher accuracy compared to black-box models. In this work, we present a novel interpretable neural network algorithm that uses case-based reasoning for mammography. Designed to aid a radiologist in their decisions, our network presents both a prediction of malignancy and an explanation of that prediction using known medical features. In order to yield helpful explanations, the network is designed to mimic the reasoning processes of a radiologist: our network first detects the clinically relevant semantic features of each image by comparing each new image with a learned set of prototypical image parts from the training images, then uses those clinical features to predict malignancy. Compared to other methods, our model detects clinical features (mass margins) with equal or higher accuracy, provides a more detailed explanation of its prediction, and is better able to differentiate the classification-relevant parts of the image.

Chaofan Chen, Xiaoshan Yang, Changsheng Xu et al.

Recently, the transductive graph-based methods have achieved great success in the few-shot classification task. However, most existing methods ignore exploring the class-level knowledge that can be easily learned by humans from just a handful of samples. In this paper, we propose an Explicit Class Knowledge Propagation Network (ECKPN), which is composed of the comparison, squeeze and calibration modules, to address this problem. Specifically, we first employ the comparison module to explore the pairwise sample relations to learn rich sample representations in the instance-level graph. Then, we squeeze the instance-level graph to generate the class-level graph, which can help obtain the class-level visual knowledge and facilitate modeling the relations of different classes. Next, the calibration module is adopted to characterize the relations of the classes explicitly to obtain the more discriminative class-level knowledge representations. Finally, we combine the class-level knowledge with the instance-level sample representations to guide the inference of the query samples. We conduct extensive experiments on four few-shot classification benchmarks, and the experimental results show that the proposed ECKPN significantly outperforms the state-of-the-art methods.

Chaofan Chen, Kangcheng Lin, Cynthia Rudin et al.

Lending decisions are usually made with proprietary models that provide minimally acceptable explanations to users. In a future world without such secrecy, what decision support tools would one want to use for justified lending decisions? This question is timely, since the economy has dramatically shifted due to a pandemic, and a massive number of new loans will be necessary in the short term. We propose a framework for such decisions, including a globally interpretable machine learning model, an interactive visualization of it, and several types of summaries and explanations for any given decision. The machine learning model is a two-layer additive risk model, which resembles a two-layer neural network, but is decomposable into subscales. In this model, each node in the first (hidden) layer represents a meaningful subscale model, and all of the nonlinearities are transparent. Our online visualization tool allows exploration of this model, showing precisely how it came to its conclusion. We provide three types of explanations that are simpler than, but consistent with, the global model: case-based reasoning explanations that use neighboring past cases, a set of features that were the most important for the model's prediction, and summary-explanations that provide a customized sparse explanation for any particular lending decision made by the model. Our framework earned the FICO recognition award for the Explainable Machine Learning Challenge, which was the first public challenge in the domain of explainable machine learning.

Alina Jade Barnett, Fides Regina Schwartz, Chaofan Tao et al.

Interpretability in machine learning models is important in high-stakes decisions, such as whether to order a biopsy based on a mammographic exam. Mammography poses important challenges that are not present in other computer vision tasks: datasets are small, confounding information is present, and it can be difficult even for a radiologist to decide between watchful waiting and biopsy based on a mammogram alone. In this work, we present a framework for interpretable machine learning-based mammography. In addition to predicting whether a lesion is malignant or benign, our work aims to follow the reasoning processes of radiologists in detecting clinically relevant semantic features of each image, such as the characteristics of the mass margins. The framework includes a novel interpretable neural network algorithm that uses case-based reasoning for mammography. Our algorithm can incorporate a combination of data with whole image labelling and data with pixel-wise annotations, leading to better accuracy and interpretability even with a small number of images. Our interpretable models are able to highlight the classification-relevant parts of the image, whereas other methods highlight healthy tissue and confounding information. Our models are decision aids, rather than decision makers, aimed at better overall human-machine collaboration. We do not observe a loss in mass margin classification accuracy over a black box neural network trained on the same data.

Cynthia Rudin, Chaofan Chen, Zhi Chen et al.

Interpretability in machine learning (ML) is crucial for high stakes decisions and troubleshooting. In this work, we provide fundamental principles for interpretable ML, and dispel common misunderstandings that dilute the importance of this crucial topic. We also identify 10 technical challenge areas in interpretable machine learning and provide history and background on each problem. Some of these problems are classically important, and some are recent problems that have arisen in the last few years. These problems are: (1) Optimizing sparse logical models such as decision trees; (2) Optimization of scoring systems; (3) Placing constraints into generalized additive models to encourage sparsity and better interpretability; (4) Modern case-based reasoning, including neural networks and matching for causal inference; (5) Complete supervised disentanglement of neural networks; (6) Complete or even partial unsupervised disentanglement of neural networks; (7) Dimensionality reduction for data visualization; (8) Machine learning models that can incorporate physics and other generative or causal constraints; (9) Characterization of the "Rashomon set" of good models; and (10) Interpretable reinforcement learning. This survey is suitable as a starting point for statisticians and computer scientists interested in working in interpretable machine learning.

Peter Hase, Chaofan Chen, Oscar Li et al.

Vision models are interpretable when they classify objects on the basis of features that a person can directly understand. Recently, methods relying on visual feature prototypes have been developed for this purpose. However, in contrast to how humans categorize objects, these approaches have not yet made use of any taxonomical organization of class labels. With such an approach, for instance, we may see why a chimpanzee is classified as a chimpanzee, but not why it was considered to be a primate or even an animal. In this work we introduce a model that uses hierarchically organized prototypes to classify objects at every level in a predefined taxonomy. Hence, we may find distinct explanations for the prediction an image receives at each level of the taxonomy. The hierarchical prototypes enable the model to perform another important task: interpretably classifying images from previously unseen classes at the level of the taxonomy to which they correctly relate, e.g. classifying a hand gun as a weapon, when the only weapons in the training data are rifles. With a subset of ImageNet, we test our model against its counterpart black-box model on two tasks: 1) classification of data from familiar classes, and 2) classification of data from previously unseen classes at the appropriate level in the taxonomy. We find that our model performs approximately as well as its counterpart black-box model while allowing for each classification to be interpreted.

Chaofan Chen, Kangcheng Lin, Cynthia Rudin et al.

We propose a possible solution to a public challenge posed by the Fair Isaac Corporation (FICO), which is to provide an explainable model for credit risk assessment. Rather than present a black box model and explain it afterwards, we provide a globally interpretable model that is as accurate as other neural networks. Our "two-layer additive risk model" is decomposable into subscales, where each node in the second layer represents a meaningful subscale, and all of the nonlinearities are transparent. We provide three types of explanations that are simpler than, but consistent with, the global model. One of these explanation methods involves solving a minimum set cover problem to find high-support globally-consistent explanations. We present a new online visualization tool to allow users to explore the global model and its explanations.

Chaofan Chen, Oscar Li, Chaofan Tao et al.

When we are faced with challenging image classification tasks, we often explain our reasoning by dissecting the image, and pointing out prototypical aspects of one class or another. The mounting evidence for each of the classes helps us make our final decision. In this work, we introduce a deep network architecture -- prototypical part network (ProtoPNet), that reasons in a similar way: the network dissects the image by finding prototypical parts, and combines evidence from the prototypes to make a final classification. The model thus reasons in a way that is qualitatively similar to the way ornithologists, physicians, and others would explain to people on how to solve challenging image classification tasks. The network uses only image-level labels for training without any annotations for parts of images. We demonstrate our method on the CUB-200-2011 dataset and the Stanford Cars dataset. Our experiments show that ProtoPNet can achieve comparable accuracy with its analogous non-interpretable counterpart, and when several ProtoPNets are combined into a larger network, it can achieve an accuracy that is on par with some of the best-performing deep models. Moreover, ProtoPNet provides a level of interpretability that is absent in other interpretable deep models.

Oscar Li, Hao Liu, Chaofan Chen et al.

Deep neural networks are widely used for classification. These deep models often suffer from a lack of interpretability -- they are particularly difficult to understand because of their non-linear nature. As a result, neural networks are often treated as "black box" models, and in the past, have been trained purely to optimize the accuracy of predictions. In this work, we create a novel network architecture for deep learning that naturally explains its own reasoning for each prediction. This architecture contains an autoencoder and a special prototype layer, where each unit of that layer stores a weight vector that resembles an encoded training input. The encoder of the autoencoder allows us to do comparisons within the latent space, while the decoder allows us to visualize the learned prototypes. The training objective has four terms: an accuracy term, a term that encourages every prototype to be similar to at least one encoded input, a term that encourages every encoded input to be close to at least one prototype, and a term that encourages faithful reconstruction by the autoencoder. The distances computed in the prototype layer are used as part of the classification process. Since the prototypes are learned during training, the learned network naturally comes with explanations for each prediction, and the explanations are loyal to what the network actually computes.

Chaofan Chen, Cynthia Rudin

A falling rule list is a probabilistic decision list for binary classification, consisting of a series of if-then rules with antecedents in the if clauses and probabilities of the desired outcome ("1") in the then clauses. Just as in a regular decision list, the order of rules in a falling rule list is important -- each example is classified by the first rule whose antecedent it satisfies. Unlike a regular decision list, a falling rule list requires the probabilities of the desired outcome ("1") to be monotonically decreasing down the list. We propose an optimization approach to learning falling rule lists and "softly" falling rule lists, along with Monte-Carlo search algorithms that use bounds on the optimal solution to prune the search space.