Hongyi Gu

Hongyi Gu, Burhaneddin Yaman, Steen Moeller et al.

Recent studies show that deep learning (DL) based MRI reconstruction outperforms conventional methods, such as parallel imaging and compressed sensing (CS), in multiple applications. Unlike CS that is typically implemented with pre-determined linear representations for regularization, DL inherently uses a non-linear representation learned from a large database. Another line of work uses transform learning (TL) to bridge the gap between these two approaches by learning linear representations from data. In this work, we combine ideas from CS, TL and DL reconstructions to learn deep linear convolutional transforms as part of an algorithm unrolling approach. Using end-to-end training, our results show that the proposed technique can reconstruct MR images to a level comparable to DL methods, while supporting uniform undersampling patterns unlike conventional CS methods. Our proposed method relies on convex sparse image reconstruction with linear representation at inference time, which may be beneficial for characterizing robustness, stability and generalizability.

Diana Galvan-Sosa, Gabrielle Gaudeau, Pride Kavumba et al.

The performance and usability of Large-Language Models (LLMs) are driving their use in explanation generation tasks. However, despite their widespread adoption, LLM explanations have been found to be unreliable, making it difficult for users to distinguish good from bad explanations. To address this issue, we present Rubrik's CUBE, an education-inspired rubric and a dataset of 26k explanations, written and later quality-annotated using the rubric by both humans and six open- and closed-source LLMs. The CUBE dataset focuses on two reasoning and two language tasks, providing the necessary diversity for us to effectively test our proposed rubric. Using Rubrik, we find that explanations are influenced by both task and perceived difficulty. Low quality stems primarily from a lack of conciseness in LLM-generated explanations, rather than cohesion and word choice. The full dataset, rubric, and code are available at https://github.com/RubriksCube/rubriks_cube.

Hongyi Gu, Chi Zhang, Zidan Yu et al.

Functional MRI (fMRI) is an important tool for non-invasive studies of brain function. Over the past decade, multi-echo fMRI methods that sample multiple echo times has become popular with potential to improve quantification. While these acquisitions are typically performed with Cartesian trajectories, non-Cartesian trajectories, in particular spiral acquisitions, hold promise for denser sampling of echo times. However, such acquisitions require very high acceleration rates for sufficient spatiotemporal resolutions. In this work, we propose to use a physics-driven deep learning (PD-DL) reconstruction to accelerate multi-echo spiral fMRI by 10-fold. We modify a self-supervised learning algorithm for optimized training with non-Cartesian trajectories and use it to train the PD-DL network. Results show that the proposed self-supervised PD-DL reconstruction achieves high spatio-temporal resolution with meaningful BOLD analysis.

Suchir Salhan, Hongyi Gu, Donya Rooein et al.

Multi-turn dialogues between a child and a caregiver are characterized by a property called contingency - that is, prompt, direct, and meaningful exchanges between interlocutors. We introduce ContingentChat, a teacher-student framework that benchmarks and improves multi-turn contingency in a BabyLM trained on 100M words. Using a novel alignment dataset for post-training, BabyLM generates responses that are more grammatical and cohesive. Experiments with adaptive teacher decoding strategies show limited additional gains. ContingentChat demonstrates the benefits of targeted post-training for dialogue quality and indicates that contingency remains a challenging goal for BabyLMs.

Burhaneddin Yaman, Hongyi Gu, Seyed Amir Hossein Hosseini et al.

Self-supervised learning has shown great promise due to its capability to train deep learning MRI reconstruction methods without fully-sampled data. Current self-supervised learning methods for physics-guided reconstruction networks split acquired undersampled data into two disjoint sets, where one is used for data consistency (DC) in the unrolled network and the other to define the training loss. In this study, we propose an improved self-supervised learning strategy that more efficiently uses the acquired data to train a physics-guided reconstruction network without a database of fully-sampled data. The proposed multi-mask self-supervised learning via data undersampling (SSDU) applies a hold-out masking operation on acquired measurements to split it into multiple pairs of disjoint sets for each training sample, while using one of these pairs for DC units and the other for defining loss, thereby more efficiently using the undersampled data. Multi-mask SSDU is applied on fully-sampled 3D knee and prospectively undersampled 3D brain MRI datasets, for various acceleration rates and patterns, and compared to CG-SENSE and single-mask SSDU DL-MRI, as well as supervised DL-MRI when fully-sampled data is available. Results on knee MRI show that the proposed multi-mask SSDU outperforms SSDU and performs closely with supervised DL-MRI. A clinical reader study further ranks the multi-mask SSDU higher than supervised DL-MRI in terms of SNR and aliasing artifacts. Results on brain MRI show that multi-mask SSDU achieves better reconstruction quality compared to SSDU. Reader study demonstrates that multi-mask SSDU at R=8 significantly improves reconstruction compared to single-mask SSDU at R=8, as well as CG-SENSE at R=2.