Sebastian Vollmer

CV
h-index23
35papers
556citations
Novelty40%
AI Score54

35 Papers

AIOct 22, 2025
Benchmarking World-Model Learning

Archana Warrier, Dat Nguyen, Michelangelo Naim et al. · cambridge

Model-learning agents should gather information to learn world models that support many downstream tasks and inferences, such as predicting unobserved states, estimating near- and far-term consequences of actions, planning action sequences, and detecting changes in dynamics. Current methods for learning and evaluating world models diverge from this goal: training and evaluation are anchored to next-frame prediction, and success is scored by reward maximization in the same environment. We propose WorldTest, a protocol to evaluate model-learning agents that separates reward-free interaction from a scored test phase in a different but related environment. WorldTest is open-ended$\unicode{x2014}$models should support many different tasks unknown ahead of time$\unicode{x2014}$and agnostic to model representation, allowing comparison across approaches. We instantiated WorldTest with AutumnBench, a suite of 43 interactive grid-world environments and 129 tasks across three families: masked-frame prediction, planning, and predicting changes to the causal dynamics. We compared 517 human participants and three frontier models on AutumnBench. We found that humans outperform the models, and scaling compute improves performance only in some environments but not others. WorldTest provides a novel template$\unicode{x2014}$reward-free exploration, derived tests, and behavior-based scoring$\unicode{x2014}$to evaluate what agents learn about environment dynamics, and AutumnBench exposes significant headroom in world-model learning.

CYMay 26, 2022
Flexible Group Fairness Metrics for Survival Analysis

Raphael Sonabend, Florian Pfisterer, Alan Mishler et al.

Algorithmic fairness is an increasingly important field concerned with detecting and mitigating biases in machine learning models. There has been a wealth of literature for algorithmic fairness in regression and classification however there has been little exploration of the field for survival analysis. Survival analysis is the prediction task in which one attempts to predict the probability of an event occurring over time. Survival predictions are particularly important in sensitive settings such as when utilising machine learning for diagnosis and prognosis of patients. In this paper we explore how to utilise existing survival metrics to measure bias with group fairness metrics. We explore this in an empirical experiment with 29 survival datasets and 8 measures. We find that measures of discrimination are able to capture bias well whereas there is less clarity with measures of calibration and scoring rules. We suggest further areas for research including prediction-based fairness metrics for distribution predictions.

CVApr 16
MS-SSE-Net: A Multi-Scale Spatial Squeeze-and-Excitation Network for Structural Damage Detection in Civil and Geotechnical Engineering

Saif ur Rehman Khan, Imad Ahmed Waqar, Arooj Zaib et al.

Structural damage detection is essential for maintaining the safety and reliability of civil infrastructure. However, accurately identifying different types of structural damage from images remains challenging due to variations in damage patterns and environmental conditions. To address these challenges, this paper proposes MS-SSE-Net, a novel deep learning (DL) framework for structural damage classification. The proposed model is built upon the DenseNet201 backbone and integrates novel multi-scale feature extraction with channel and spatial attention mechanisms (MS-SSE-Net). Specifically, parallel depthwise convolutions capture both local and contextual features, while squeeze-and-excitation style channel attention and spatial attention emphasize informative regions and suppress irrelevant noise. The refined features are then processed through global average pooling and a fully connected classification layer to generate the final predictions. Experiments are conducted on the StructDamage dataset containing multiple structural damage categories. The proposed MS-SSE-Net demonstrates superior performance compared with the baseline DenseNet201 and other comparative approaches. Specifically, the proposed method achieves 99.31% precision, 99.25% recall, 99.27% F1-score, and 99.26% accuracy, outperforming the baseline model which achieved 98.62% precision, 98.53% recall, 98.58% F1-score, and 98.53% accuracy.

CVMar 16
Automated Diabetic Screening via Anterior Segment Ocular Imaging: A Deep Learning and Explainable AI Approach

Hasaan Maqsood, Saif Ur Rehman Khan, Sebastian Vollmer et al.

Diabetic retinopathy screening traditionally relies on fundus photography, requiring specialized equipment and expertise often unavailable in primary care and resource limited settings. We developed and validated a deep learning (DL) system for automated diabetic classification using anterior segment ocular imaging a readily accessible alternative utilizing standard photography equipment. The system leverages visible biomarkers in the iris, sclera, and conjunctiva that correlate with systemic diabetic status. We systematically evaluated five contemporary architectures (EfficientNet-V2-S with self-supervised learning (SSL), Vision Transformer, Swin Transformer, ConvNeXt-Base, and ResNet-50) on 2,640 clinically annotated anterior segment images spanning Normal, Controlled Diabetic, and Uncontrolled Diabetic categories. A tailored preprocessing pipeline combining specular reflection mitigation and contrast limited adaptive histogram equalization (CLAHE) was implemented to enhance subtle vascular and textural patterns critical for classification. SSL using SimCLR on domain specific ocular images substantially improved model performance.EfficientNet-V2-S with SSL achieved optimal performance with an F1-score of 98.21%, precision of 97.90%, and recall of 98.55% a substantial improvement over ImageNet only initialization (94.63% F1). Notably, the model attained near perfect precision (100%) for Normal classification, critical for minimizing unnecessary clinical referrals.

CVMay 21
SegGuidedNet: Sub-Region-Aware Attention Supervision for Interpretable Brain Tumor Segmentation

Hasaan Maqsood, Saif Ur Rehman Khan, Sebastian Vollmer et al.

Accurate segmentation of brain tumour sub-regions from multi-parametric MRI is critical for treatment planning yet remains challenging due to morphological variability, class imbalance, and overlapping appearances of tumour regions across imaging sequences. We propose SegGuidedNet, a three-dimensional residual encoder--decoder network introducing a novel SegAttentionGate module that explicitly supervises the decoder to produce spatially discriminative attention maps for each tumour sub-region necrotic core, peritumoral oedema, and enhancing tumour via a lightweight auxiliary loss, adding less than 0.2% parameter overhead. This sub-region supervision maintains decoder discriminability between visually ambiguous classes while providing free-of-cost spatial interpretability at inference without any post-hoc explanation method. Evaluated independently on BraTS2021 and BraTS2023 GLI across 251 held-out subjects each, SegGuidedNet achieves mean Dice of 0.905 (ET= 0.873, TC=0.906, WT=0.935) and 0.897 (ET=0.859, TC=0.902, WT=0.931) respectively, surpassing ensemble-based nnU-Net and HNF-Netv2 as a single model and approaching Swin UNETR a 10-model ensemble within 2--4 Dice points at a fraction of the inference cost. The consistency of results across two benchmark editions further confirms the generalisability of the proposed approach, offering competitive accuracy with built-in interpretability in a lightweight, clinically practical framework.

LGFeb 6, 2025Code
CleanSurvival: Automated data preprocessing for time-to-event models using reinforcement learning

Yousef Koka, David Selby, Gerrit Großmann et al.

Data preprocessing is a critical yet frequently neglected aspect of machine learning, often paid little attention despite its potentially significant impact on model performance. While automated machine learning pipelines are starting to recognize and integrate data preprocessing into their solutions for classification and regression tasks, this integration is lacking for more specialized tasks like survival or time-to-event models. As a result, survival analysis not only faces the general challenges of data preprocessing but also suffers from the lack of tailored, automated solutions in this area. To address this gap, this paper presents 'CleanSurvival', a reinforcement-learning-based solution for optimizing preprocessing pipelines, extended specifically for survival analysis. The framework can handle continuous and categorical variables, using Q-learning to select which combination of data imputation, outlier detection and feature extraction techniques achieves optimal performance for a Cox, random forest, neural network or user-supplied time-to-event model. The package is available on GitHub: https://github.com/datasciapps/CleanSurvival Experimental benchmarks on real-world datasets show that the Q-learning-based data preprocessing results in superior predictive performance to standard approaches, finding such a model up to 10 times faster than undirected random grid search. Furthermore, a simulation study demonstrates the effectiveness in different types and levels of missingness and noise in the data.

CVMar 11
StructDamage:A Large Scale Unified Crack and Surface Defect Dataset for Robust Structural Damage Detection

Misbah Ijaz, Saif Ur Rehman Khan, Abd Ur Rehman et al.

Automated detection and classification of structural cracks and surface defects is a critical challenge in civil engineering, infrastructure maintenance, and heritage preservation. Recent advances in Computer Vision (CV) and Deep Learning (DL) have significantly improved automatic crack detection. However, these methods rely heavily on large, diverse, and carefully curated datasets that include various crack types across different surface materials. Many existing public crack datasets lack geographic diversity, surface types, scale, and labeling consistency, making it challenging for trained algorithms to generalize effectively in real world conditions. We provide a novel dataset, StructDamage, a curated collection of approximately 78,093 images spanning nine surface types: walls, tile, stone, road, pavement, deck, concrete, and brick. The dataset was constructed by systematically aggregating, harmonizing, and reannotating images from 32 publicly available datasets covering concrete structures, asphalt pavements, masonry walls, bridges, and historic buildings. All images are organized in a folder level classification hierarchy suitable for training Convolutional Neural Networks (CNNs) and Vision Transformers. To highlight the practical value of the dataset, we present baseline classification results using fifteen DL architectures from six model families, with twelve achieving macro F1-scores over 0.96. The best performing model DenseNet201 achieves 98.62% accuracy. The proposed dataset provides a comprehensive and versatile resource suitable for classification tasks. With thorough documentation and a standard structure, it is designed to promote reproducible research and support the development and fair evaluation of robust crack damage detection approaches.

MLDec 9, 2021Code
Avoiding C-hacking when evaluating survival distribution predictions with discrimination measures

Raphael Sonabend, Andreas Bender, Sebastian Vollmer

In this paper we consider how to evaluate survival distribution predictions with measures of discrimination. This is a non-trivial problem as discrimination measures are the most commonly used in survival analysis and yet there is no clear method to derive a risk prediction from a distribution prediction. We survey methods proposed in literature and software and consider their respective advantages and disadvantages. Whilst distributions are frequently evaluated by discrimination measures, we find that the method for doing so is rarely described in the literature and often leads to unfair comparisons. We find that the most robust method of reducing a distribution to a risk is to sum over the predicted cumulative hazard. We recommend that machine learning survival analysis software implements clear transformations between distribution and risk predictions in order to allow more transparent and accessible model evaluation. The code used in the final experiment is available at https://github.com/RaphaelS1/distribution_discrimination.

HCMar 27
KI-Adventskalender: An Informal Learning Intervention for Data & AI Literacy

Rahul Sharma, Lars Henrich, Larisa Ivanova et al.

Secondary school students increasingly encounter AI systems whose outputs depend on data quality, evaluation choices and modeling assumptions. To provide accessible entry points to these interconnected concepts, we developed KI-Adventskalender, a free web-based extracurricular initiative with 24 didactically curated, short, guided micro-challenges released daily in December, targeting data-centric competencies and socio-technical themes that shape how data are interpreted in practice. Drawing on two annual iterations, we report aggregate platform traces characterizing participation and task-level engagement. Participation increased substantially in 2025, but early attrition persists. Progression stabilized after midpoint: among users reaching Day 12 in 2025, more than 75% completed the calendar. Competence cluster performance shifted across years; higher revision rates co-occurred with strong pass rates, suggesting sustained engagement. We use these observations to motivate a next-step measurement agenda: tighter task instrumentation, embedded micro-assessments and mixed-method evaluation designs that can distinguish persistence from conceptual uptake, knowledge progression and durable learning outcomes.

CVMar 18, 2025
AI-Driven Diabetic Retinopathy Diagnosis Enhancement through Image Processing and Salp Swarm Algorithm-Optimized Ensemble Network

Saif Ur Rehman Khan, Muhammad Nabeel Asim, Sebastian Vollmer et al.

Diabetic retinopathy is a leading cause of blindness in diabetic patients and early detection plays a crucial role in preventing vision loss. Traditional diagnostic methods are often time-consuming and prone to errors. The emergence of deep learning techniques has provided innovative solutions to improve diagnostic efficiency. However, single deep learning models frequently face issues related to extracting key features from complex retinal images. To handle this problem, we present an effective ensemble method for DR diagnosis comprising four main phases: image pre-processing, selection of backbone pre-trained models, feature enhancement, and optimization. Our methodology initiates with the pre-processing phase, where we apply CLAHE to enhance image contrast and Gamma correction is then used to adjust the brightness for better feature recognition. We then apply Discrete Wavelet Transform (DWT) for image fusion by combining multi-resolution details to create a richer dataset. Then, we selected three pre-trained models with the best performance named DenseNet169, MobileNetV1, and Xception for diverse feature extraction. To further improve feature extraction, an improved residual block is integrated into each model. Finally, the predictions from these base models are then aggregated using weighted ensemble approach, with the weights optimized by using Salp Swarm Algorithm (SSA).SSA intelligently explores the weight space and finds the optimal configuration of base architectures to maximize the performance of the ensemble model. The proposed model is evaluated on the multiclass Kaggle APTOS 2019 dataset and obtained 88.52% accuracy.

CVApr 26
SolarFCD: A Large-Scale Dataset and Benchmark for Solar Fault Classification in Photovoltaic Systems

Misbah Ijaz, Saif Ur Rehman Khan, Abd Ur Rehman et al.

The increasing global deployment of solar photovoltaic (PV) systems needs robust, scalable, and automated inspection technologies capable of detecting a wide range of panel flaws under a variety of operating situations. The lack of large-scale, multi-modal, publicly available annotated datasets is a major obstacle preventing advancement in this field. We introduce SolarFCD, an extensive dataset of solar panel defects created by methodically combining and reconciling three publicly accessible datasets covering two imaging modalities: RGB/Drone images and Thermal Infrared. The dataset consist of 4,435 images arranged under four unified defect classes such as: healthy images, Surface Obstruction, structural fault, and electrical fault. The dataset was divided into training, validation, and test splits at an 80:10:10 ratio through methodical label mapping, near-duplicate removal, and targeted augmentation of minority classes. Sixteen classification architectures from five design families were trained and assessed on the dataset to provide repeatable benchmark baselines. With an accuracy of 86.68%, precision of 88.65%, recall of 88.62%, and F1-score of 88.17%, ResNet101V2 performed the best overall. Per-class results showed balanced detection across all four defect categories within a narrow performance band of less than 1.2 percentage points. To promote open and repeatable research in automated PV inspection and solar energy operations and maintenance, the dataset, annotation files, and baseline code are made openly available.

CVJul 9, 2025
FOLC-Net: A Federated-Optimized Lightweight Architecture for Enhanced MRI Disease Diagnosis across Axial, Coronal, and Sagittal Views

Saif Ur Rehman Khan, Muhammad Nabeel Asim, Sebastian Vollmer et al.

The framework is designed to improve performance in the analysis of combined as well as single anatomical perspectives for MRI disease diagnosis. It specifically addresses the performance degradation observed in state-of-the-art (SOTA) models, particularly when processing axial, coronal, and sagittal anatomical planes. The paper introduces the FOLC-Net framework, which incorporates a novel federated-optimized lightweight architecture with approximately 1.217 million parameters and a storage requirement of only 0.9 MB. FOLC-Net integrates Manta-ray foraging optimization (MRFO) mechanisms for efficient model structure generation, global model cloning for scalable training, and ConvNeXt for enhanced client adaptability. The model was evaluated on combined multi-view data as well as individual views, such as axial, coronal, and sagittal, to assess its robustness in various medical imaging scenarios. Moreover, FOLC-Net tests a ShallowFed model on different data to evaluate its ability to generalize beyond the training dataset. The results show that FOLC-Net outperforms existing models, particularly in the challenging sagittal view. For instance, FOLC-Net achieved an accuracy of 92.44% on the sagittal view, significantly higher than the 88.37% accuracy of study method (DL + Residual Learning) and 88.95% of DL models. Additionally, FOLC-Net demonstrated improved accuracy across all individual views, providing a more reliable and robust solution for medical image analysis in decentralized environments. FOLC-Net addresses the limitations of existing SOTA models by providing a framework that ensures better adaptability to individual views while maintaining strong performance in multi-view settings. The incorporation of MRFO, global model cloning, and ConvNeXt ensures that FOLC-Net performs better in real-world medical applications.

CVMay 9, 2025
Temperature-Driven Robust Disease Detection in Brain and Gastrointestinal Disorders via Context-Aware Adaptive Knowledge Distillation

Saif Ur Rehman Khan, Muhammad Nabeel Asim, Sebastian Vollmer et al.

Medical disease prediction, particularly through imaging, remains a challenging task due to the complexity and variability of medical data, including noise, ambiguity, and differing image quality. Recent deep learning models, including Knowledge Distillation (KD) methods, have shown promising results in brain tumor image identification but still face limitations in handling uncertainty and generalizing across diverse medical conditions. Traditional KD methods often rely on a context-unaware temperature parameter to soften teacher model predictions, which does not adapt effectively to varying uncertainty levels present in medical images. To address this issue, we propose a novel framework that integrates Ant Colony Optimization (ACO) for optimal teacher-student model selection and a novel context-aware predictor approach for temperature scaling. The proposed context-aware framework adjusts the temperature based on factors such as image quality, disease complexity, and teacher model confidence, allowing for more robust knowledge transfer. Additionally, ACO efficiently selects the most appropriate teacher-student model pair from a set of pre-trained models, outperforming current optimization methods by exploring a broader solution space and better handling complex, non-linear relationships within the data. The proposed framework is evaluated using three publicly available benchmark datasets, each corresponding to a distinct medical imaging task. The results demonstrate that the proposed framework significantly outperforms current state-of-the-art methods, achieving top accuracy rates: 98.01% on the MRI brain tumor (Kaggle) dataset, 92.81% on the Figshare MRI dataset, and 96.20% on the GastroNet dataset. This enhanced performance is further evidenced by the improved results, surpassing existing benchmarks of 97.24% (Kaggle), 91.43% (Figshare), and 95.00% (GastroNet).

CLJul 11, 2025
Finding Common Ground: Using Large Language Models to Detect Agreement in Multi-Agent Decision Conferences

Selina Heller, Mohamed Ibrahim, David Antony Selby et al.

Decision conferences are structured, collaborative meetings that bring together experts from various fields to address complex issues and reach a consensus on recommendations for future actions or policies. These conferences often rely on facilitated discussions to ensure productive dialogue and collective agreement. Recently, Large Language Models (LLMs) have shown significant promise in simulating real-world scenarios, particularly through collaborative multi-agent systems that mimic group interactions. In this work, we present a novel LLM-based multi-agent system designed to simulate decision conferences, specifically focusing on detecting agreement among the participant agents. To achieve this, we evaluate six distinct LLMs on two tasks: stance detection, which identifies the position an agent takes on a given issue, and stance polarity detection, which identifies the sentiment as positive, negative, or neutral. These models are further assessed within the multi-agent system to determine their effectiveness in complex simulations. Our results indicate that LLMs can reliably detect agreement even in dynamic and nuanced debates. Incorporating an agreement-detection agent within the system can also improve the efficiency of group debates and enhance the overall quality and coherence of deliberations, making them comparable to real-world decision conferences regarding outcome and decision-making. These findings demonstrate the potential for LLM-based multi-agent systems to simulate group decision-making processes. They also highlight that such systems could be instrumental in supporting decision-making with expert elicitation workshops across various domains.

IRFeb 12, 2024
Had enough of experts? Quantitative knowledge retrieval from large language models

David Selby, Kai Spriestersbach, Yuichiro Iwashita et al.

Large language models (LLMs) have been extensively studied for their abilities to generate convincing natural language sequences, however their utility for quantitative information retrieval is less well understood. Here we explore the feasibility of LLMs as a mechanism for quantitative knowledge retrieval to aid two data analysis tasks: elicitation of prior distributions for Bayesian models and imputation of missing data. We introduce a framework that leverages LLMs to enhance Bayesian workflows by eliciting expert-like prior knowledge and imputing missing data. Tested on diverse datasets, this approach can improve predictive accuracy and reduce data requirements, offering significant potential in healthcare, environmental science and engineering applications. We discuss the implications and challenges of treating LLMs as 'experts'.

AIAug 2, 2025
BioDisco: Multi-agent hypothesis generation with dual-mode evidence, iterative feedback and temporal evaluation

Yujing Ke, Kevin George, Kathan Pandya et al.

Identifying novel hypotheses is essential to scientific research, yet this process risks being overwhelmed by the sheer volume and complexity of available information. Existing automated methods often struggle to generate novel and evidence-grounded hypotheses, lack robust iterative refinement and rarely undergo rigorous temporal evaluation for future discovery potential. To address this, we propose BioDisco, a multi-agent framework that draws upon language model-based reasoning and a dual-mode evidence system (biomedical knowledge graphs and automated literature retrieval) for grounded novelty, integrates an internal scoring and feedback loop for iterative refinement, and validates performance through pioneering temporal and human evaluations and a Bradley-Terry paired comparison model to provide statistically-grounded assessment. Our evaluations demonstrate superior novelty and significance over ablated configurations representative of existing agentic architectures. Designed for flexibility and modularity, BioDisco allows seamless integration of custom language models or knowledge graphs, and can be run with just a few lines of code. We anticipate researchers using this practical tool as a catalyst for the discovery of new hypotheses.

LGFeb 13, 2025
Neural Spatiotemporal Point Processes: Trends and Challenges

Sumantrak Mukherjee, Mouad Elhamdi, George Mohler et al.

Spatiotemporal point processes (STPPs) are probabilistic models for events occurring in continuous space and time. Real-world event data often exhibit intricate dependencies and heterogeneous dynamics. By incorporating modern deep learning techniques, STPPs can model these complexities more effectively than traditional approaches. Consequently, the fusion of neural methods with STPPs has become an active and rapidly evolving research area. In this review, we categorize existing approaches, unify key design choices, and explain the challenges of working with this data modality. We further highlight emerging trends and diverse application domains. Finally, we identify open challenges and gaps in the literature.

CVOct 23, 2025
Dynamic Weight Adjustment for Knowledge Distillation: Leveraging Vision Transformer for High-Accuracy Lung Cancer Detection and Real-Time Deployment

Saif Ur Rehman Khan, Muhammad Nabeel Asim, Sebastian Vollmer et al.

This paper presents the FuzzyDistillViT-MobileNet model, a novel approach for lung cancer (LC) classification, leveraging dynamic fuzzy logic-driven knowledge distillation (KD) to address uncertainty and complexity in disease diagnosis. Unlike traditional models that rely on static KD with fixed weights, our method dynamically adjusts the distillation weight using fuzzy logic, enabling the student model to focus on high-confidence regions while reducing attention to ambiguous areas. This dynamic adjustment improves the model ability to handle varying uncertainty levels across different regions of LC images. We employ the Vision Transformer (ViT-B32) as the instructor model, which effectively transfers knowledge to the student model, MobileNet, enhancing the student generalization capabilities. The training process is further optimized using a dynamic wait adjustment mechanism that adapts the training procedure for improved convergence and performance. To enhance image quality, we introduce pixel-level image fusion improvement techniques such as Gamma correction and Histogram Equalization. The processed images (Pix1 and Pix2) are fused using a wavelet-based fusion method to improve image resolution and feature preservation. This fusion method uses the wavedec2 function to standardize images to a 224x224 resolution, decompose them into multi-scale frequency components, and recursively average coefficients at each level for better feature representation. To address computational efficiency, Genetic Algorithm (GA) is used to select the most suitable pre-trained student model from a pool of 12 candidates, balancing model performance with computational cost. The model is evaluated on two datasets, including LC25000 histopathological images (99.16% accuracy) and IQOTH/NCCD CT-scan images (99.54% accuracy), demonstrating robustness across different imaging domains.

LGOct 20, 2025
Formally Exploring Time-Series Anomaly Detection Evaluation Metrics

Dennis Wagner, Arjun Nair, Billy Joe Franks et al.

Undetected anomalies in time series can trigger catastrophic failures in safety-critical systems, such as chemical plant explosions or power grid outages. Although many detection methods have been proposed, their performance remains unclear because current metrics capture only narrow aspects of the task and often yield misleading results. We address this issue by introducing verifiable properties that formalize essential requirements for evaluating time-series anomaly detection. These properties enable a theoretical framework that supports principled evaluations and reliable comparisons. Analyzing 37 widely used metrics, we show that most satisfy only a few properties, and none satisfy all, explaining persistent inconsistencies in prior results. To close this gap, we propose LARM, a flexible metric that provably satisfies all properties, and extend it to ALARM, an advanced variant meeting stricter requirements.

MESep 4, 2025
How many patients could we save with LLM priors?

Shota Arai, David Selby, Andrew Vargo et al.

Imagine a world where clinical trials need far fewer patients to achieve the same statistical power, thanks to the knowledge encoded in large language models (LLMs). We present a novel framework for hierarchical Bayesian modeling of adverse events in multi-center clinical trials, leveraging LLM-informed prior distributions. Unlike data augmentation approaches that generate synthetic data points, our methodology directly obtains parametric priors from the model. Our approach systematically elicits informative priors for hyperparameters in hierarchical Bayesian models using a pre-trained LLM, enabling the incorporation of external clinical expertise directly into Bayesian safety modeling. Through comprehensive temperature sensitivity analysis and rigorous cross-validation on real-world clinical trial data, we demonstrate that LLM-derived priors consistently improve predictive performance compared to traditional meta-analytical approaches. This methodology paves the way for more efficient and expert-informed clinical trial design, enabling substantial reductions in the number of patients required to achieve robust safety assessment and with the potential to transform drug safety monitoring and regulatory decision making.

CVAug 25, 2025
FloraSyntropy-Net: Scalable Deep Learning with Novel FloraSyntropy Archive for Large-Scale Plant Disease Diagnosis

Saif Ur Rehman Khan, Muhammad Nabeel Asim, Sebastian Vollmer et al.

Early diagnosis of plant diseases is critical for global food safety, yet most AI solutions lack the generalization required for real-world agricultural diversity. These models are typically constrained to specific species, failing to perform accurately across the broad spectrum of cultivated plants. To address this gap, we first introduce the FloraSyntropy Archive, a large-scale dataset of 178,922 images across 35 plant species, annotated with 97 distinct disease classes. We establish a benchmark by evaluating numerous existing models on this archive, revealing a significant performance gap. We then propose FloraSyntropy-Net, a novel federated learning framework (FL) that integrates a Memetic Algorithm (MAO) for optimal base model selection (DenseNet201), a novel Deep Block for enhanced feature representation, and a client-cloning strategy for scalable, privacy-preserving training. FloraSyntropy-Net achieves a state-of-the-art accuracy of 96.38% on the FloraSyntropy benchmark. Crucially, to validate its generalization capability, we test the model on the unrelated multiclass Pest dataset, where it demonstrates exceptional adaptability, achieving 99.84% accuracy. This work provides not only a valuable new resource but also a robust and highly generalizable framework that advances the field towards practical, large-scale agricultural AI applications.

LGJun 10, 2025
IMAGIC-500: IMputation benchmark on A Generative Imaginary Country (500k samples)

Siyi Sun, David Antony Selby, Yunchuan Huang et al.

Missing data imputation in tabular datasets remains a pivotal challenge in data science and machine learning, particularly within socioeconomic research. However, real-world socioeconomic datasets are typically subject to strict data protection protocols, which often prohibit public sharing, even for synthetic derivatives. This severely limits the reproducibility and accessibility of benchmark studies in such settings. Further, there are very few publicly available synthetic datasets. Thus, there is limited availability of benchmarks for systematic evaluation of imputation methods on socioeconomic datasets, whether real or synthetic. In this study, we utilize the World Bank's publicly available synthetic dataset, Synthetic Data for an Imaginary Country, which closely mimics a real World Bank household survey while being fully public, enabling broad access for methodological research. With this as a starting point, we derived the IMAGIC-500 dataset: we select a subset of 500k individuals across approximately 100k households with 19 socioeconomic features, designed to reflect the hierarchical structure of real-world household surveys. This paper introduces a comprehensive missing data imputation benchmark on IMAGIC-500 under various missing mechanisms (MCAR, MAR, MNAR) and missingness ratios (10\%, 20\%, 30\%, 40\%, 50\%). Our evaluation considers the imputation accuracy for continuous and categorical variables, computational efficiency, and impact on downstream predictive tasks, such as estimating educational attainment at the individual level. The results highlight the strengths and weaknesses of statistical, traditional machine learning, and deep learning imputation techniques, including recent diffusion-based methods. The IMAGIC-500 dataset and benchmark aim to facilitate the development of robust imputation algorithms and foster reproducible social science research.

LGMar 31, 2025
When Counterfactual Reasoning Fails: Chaos and Real-World Complexity

Yahya Aalaila, Gerrit Großmann, Sumantrak Mukherjee et al.

Counterfactual reasoning, a cornerstone of human cognition and decision-making, is often seen as the 'holy grail' of causal learning, with applications ranging from interpreting machine learning models to promoting algorithmic fairness. While counterfactual reasoning has been extensively studied in contexts where the underlying causal model is well-defined, real-world causal modeling is often hindered by model and parameter uncertainty, observational noise, and chaotic behavior. The reliability of counterfactual analysis in such settings remains largely unexplored. In this work, we investigate the limitations of counterfactual reasoning within the framework of Structural Causal Models. Specifically, we empirically investigate \emph{counterfactual sequence estimation} and highlight cases where it becomes increasingly unreliable. We find that realistic assumptions, such as low degrees of model uncertainty or chaotic dynamics, can result in counterintuitive outcomes, including dramatic deviations between predicted and true counterfactual trajectories. This work urges caution when applying counterfactual reasoning in settings characterized by chaos and uncertainty. Furthermore, it raises the question of whether certain systems may pose fundamental limitations on the ability to answer counterfactual questions about their behavior.

LGJan 16, 2024
X Hacking: The Threat of Misguided AutoML

Rahul Sharma, Sergey Redyuk, Sumantrak Mukherjee et al.

Explainable AI (XAI) and interpretable machine learning methods help to build trust in model predictions and derived insights, yet also present a perverse incentive for analysts to manipulate XAI metrics to support pre-specified conclusions. This paper introduces the concept of X-hacking, a form of p-hacking applied to XAI metrics such as SHAP values. We show how easily an automated machine learning pipeline can be adapted to exploit model multiplicity at scale: searching a Rashomon set of 'defensible' models with similar predictive performance to find a desired explanation. We formulate the trade-off between explanation and accuracy as a multi-objective optimisation problem, and illustrate empirically on familiar real-world datasets that, on average, Bayesian optimisation accelerates X-hacking 3-fold for features susceptible to it, versus random sampling. We show the vulnerability of a dataset to X-hacking can be determined by information redundancy among features. Finally, we suggest possible methods for detection and prevention, and discuss ethical implications for the credibility and reproducibility of XAI.

LGFeb 4, 2022
Energy-Based Models for Functional Data using Path Measure Tilting

Jen Ning Lim, Sebastian Vollmer, Lorenz Wolf et al.

Energy-Based Models (EBMs) have proven to be a highly effective approach for modelling densities on finite-dimensional spaces. Their ability to incorporate domain-specific choices and constraints into the structure of the model through composition make EBMs an appealing candidate for applications in physics, biology and computer vision and various other fields. Recently, Energy-Based Processes (EBP) for modelling stochastic processes was proposed for \textit{unconditional} exchangeable data (e.g., point clouds). In this work, we present a novel subclass of EBPs, called $\mathcal{F}$-EBM for \textit{conditional} exchangeable data, which is able to learn distributions of functions (such as curves or surfaces) from functional samples evaluated at finitely many points. Two unique challenges arise in the functional context. Firstly, training data is often not evaluated along a fixed set of points. Secondly, steps must be taken to control the behaviour of the model between evaluation points, to mitigate overfitting. The proposed model is an energy based model on function space that is decomposed spectrally, where a Gaussian Process path measure is used to reweight the distribution to capture smoothness properties of the underlying process being modelled. The resulting model has the ability to utilize irregularly sampled training data and can output predictions at any resolution, providing an effective approach to up-scaling functional data. We demonstrate the efficacy of our proposed approach for modelling a range of datasets, including data collected from Standard and Poor's 500 (S\&P) and UK National grid.

MLAug 24, 2021
Mitigating Statistical Bias within Differentially Private Synthetic Data

Sahra Ghalebikesabi, Harrison Wilde, Jack Jewson et al.

Increasing interest in privacy-preserving machine learning has led to new and evolved approaches for generating private synthetic data from undisclosed real data. However, mechanisms of privacy preservation can significantly reduce the utility of synthetic data, which in turn impacts downstream tasks such as learning predictive models or inference. We propose several re-weighting strategies using privatised likelihood ratios that not only mitigate statistical bias of downstream estimators but also have general applicability to differentially private generative models. Through large-scale empirical evaluation, we show that private importance weighting provides simple and effective privacy-compliant augmentation for general applications of synthetic data.

LGNov 16, 2020
Foundations of Bayesian Learning from Synthetic Data

Harrison Wilde, Jack Jewson, Sebastian Vollmer et al.

There is significant growth and interest in the use of synthetic data as an enabler for machine learning in environments where the release of real data is restricted due to privacy or availability constraints. Despite a large number of methods for synthetic data generation, there are comparatively few results on the statistical properties of models learnt on synthetic data, and fewer still for situations where a researcher wishes to augment real data with another party's synthesised data. We use a Bayesian paradigm to characterise the updating of model parameters when learning in these settings, demonstrating that caution should be taken when applying conventional learning algorithms without appropriate consideration of the synthetic data generating process and learning task. Recent results from general Bayesian updating support a novel and robust approach to Bayesian synthetic-learning founded on decision theory that outperforms standard approaches across repeated experiments on supervised learning and inference problems.

LGNov 4, 2020
Debiasing classifiers: is reality at variance with expectation?

Ashrya Agrawal, Florian Pfisterer, Bernd Bischl et al.

We present an empirical study of debiasing methods for classifiers, showing that debiasers often fail in practice to generalize out-of-sample, and can in fact make fairness worse rather than better. A rigorous evaluation of the debiasing treatment effect requires extensive cross-validation beyond what is usually done. We demonstrate that this phenomenon can be explained as a consequence of bias-variance trade-off, with an increase in variance necessitated by imposing a fairness constraint. Follow-up experiments validate the theoretical prediction that the estimation variance depends strongly on the base rates of the protected class. Considering fairness--performance trade-offs justifies the counterintuitive notion that partial debiasing can actually yield better results in practice on out-of-sample data.

APJul 30, 2020
A Recommendation and Risk Classification System for Connecting Rough Sleepers to Essential Outreach Services

Harrison Wilde, Lucia Lushi Chen, Austin Nguyen et al.

Rough sleeping is a chronic problem faced by some of the most disadvantaged people in modern society. This paper describes work carried out in partnership with Homeless Link, a UK-based charity, in developing a data-driven approach to assess the quality of incoming alerts from members of the public aimed at connecting people sleeping rough on the streets with outreach service providers. Alerts are prioritised based on the predicted likelihood of successfully connecting with the rough sleeper, helping to address capacity limitations and to quickly, effectively, and equitably process all of the alerts that they receive. Initial evaluation concludes that our approach increases the rate at which rough sleepers are found following a referral by at least 15\% based on labelled data, implying a greater overall increase when the alerts with unknown outcomes are considered, and suggesting the benefit in a trial taking place over a longer period to assess the models in practice. The discussion and modelling process is done with careful considerations of ethics, transparency and explainability due to the sensitive nature of the data in this context and the vulnerability of the people that are affected.

CRAug 23, 2019
Design choices for productive, secure, data-intensive research at scale in the cloud

Diego Arenas, Jon Atkins, Claire Austin et al.

We present a policy and process framework for secure environments for productive data science research projects at scale, by combining prevailing data security threat and risk profiles into five sensitivity tiers, and, at each tier, specifying recommended policies for data classification, data ingress, software ingress, data egress, user access, user device control, and analysis environments. By presenting design patterns for security choices for each tier, and using software defined infrastructure so that a different, independent, secure research environment can be instantiated for each project appropriate to its classification, we hope to maximise researcher productivity and minimise risk, allowing research organisations to operate with confidence.

CYDec 21, 2018
Machine learning and AI research for Patient Benefit: 20 Critical Questions on Transparency, Replicability, Ethics and Effectiveness

Sebastian Vollmer, Bilal A. Mateen, Gergo Bohner et al.

Machine learning (ML), artificial intelligence (AI) and other modern statistical methods are providing new opportunities to operationalize previously untapped and rapidly growing sources of data for patient benefit. Whilst there is a lot of promising research currently being undertaken, the literature as a whole lacks: transparency; clear reporting to facilitate replicability; exploration for potential ethical concerns; and, clear demonstrations of effectiveness. There are many reasons for why these issues exist, but one of the most important that we provide a preliminary solution for here is the current lack of ML/AI- specific best practice guidance. Although there is no consensus on what best practice looks in this field, we believe that interdisciplinary groups pursuing research and impact projects in the ML/AI for health domain would benefit from answering a series of questions based on the important issues that exist when undertaking work of this nature. Here we present 20 questions that span the entire project life cycle, from inception, data analysis, and model evaluation, to implementation, as a means to facilitate project planning and post-hoc (structured) independent evaluation. By beginning to answer these questions in different settings, we can start to understand what constitutes a good answer, and we expect that the resulting discussion will be central to developing an international consensus framework for transparent, replicable, ethical and effective research in artificial intelligence (AI-TREE) for health.

MLSep 15, 2016
Multilevel Monte Carlo for Scalable Bayesian Computations

Mike Giles, Tigran Nagapetyan, Lukasz Szpruch et al.

Markov chain Monte Carlo (MCMC) algorithms are ubiquitous in Bayesian computations. However, they need to access the full data set in order to evaluate the posterior density at every step of the algorithm. This results in a great computational burden in big data applications. In contrast to MCMC methods, Stochastic Gradient MCMC (SGMCMC) algorithms such as the Stochastic Gradient Langevin Dynamics (SGLD) only require access to a batch of the data set at every step. This drastically improves the computational performance and scales well to large data sets. However, the difficulty with SGMCMC algorithms comes from the sensitivity to its parameters which are notoriously difficult to tune. Moreover, the Root Mean Square Error (RMSE) scales as $\mathcal{O}(c^{-\frac{1}{3}})$ as opposed to standard MCMC $\mathcal{O}(c^{-\frac{1}{2}})$ where $c$ is the computational cost. We introduce a new class of Multilevel Stochastic Gradient Markov chain Monte Carlo algorithms that are able to mitigate the problem of tuning the step size and more importantly of recovering the $\mathcal{O}(c^{-\frac{1}{2}})$ convergence of standard Markov Chain Monte Carlo methods without the need to introduce Metropolis-Hasting steps. A further advantage of this new class of algorithms is that it can easily be parallelised over a heterogeneous computer architecture. We illustrate our methodology using Bayesian logistic regression and provide numerical evidence that for a prescribed relative RMSE the computational cost is sublinear in the number of data items.

NAMay 4, 2016
Multilevel Monte Carlo methods for the approximation of invariant measures of stochastic differential equations

Michael B. Giles, Mateusz B. Majka, Lukasz Szpruch et al.

We develop a framework that allows the use of the multi-level Monte Carlo (MLMC) methodology (Giles2015) to calculate expectations with respect to the invariant measure of an ergodic SDE. In that context, we study the (over-damped) Langevin equations with a strongly concave potential. We show that, when appropriate contracting couplings for the numerical integrators are available, one can obtain a uniform in time estimate of the MLMC variance in contrast to the majority of the results in the MLMC literature. As a consequence, a root mean square error of $\mathcal{O}(\varepsilon)$ is achieved with $\mathcal{O}(\varepsilon^{-2})$ complexity on par with Markov Chain Monte Carlo (MCMC) methods, which however can be computationally intensive when applied to large data sets. Finally, we present a multi-level version of the recently introduced Stochastic Gradient Langevin Dynamics (SGLD) method (Welling and Teh, 2011) built for large datasets applications. We show that this is the first stochastic gradient MCMC method with complexity $\mathcal{O}(\varepsilon^{-2}|\log {\varepsilon}|^{3})$, in contrast to the complexity $\mathcal{O}(\varepsilon^{-3})$ of currently available methods. Numerical experiments confirm our theoretical findings.

LGDec 31, 2015
Distributed Bayesian Learning with Stochastic Natural-gradient Expectation Propagation and the Posterior Server

Leonard Hasenclever, Stefan Webb, Thibaut Lienart et al.

This paper makes two contributions to Bayesian machine learning algorithms. Firstly, we propose stochastic natural gradient expectation propagation (SNEP), a novel alternative to expectation propagation (EP), a popular variational inference algorithm. SNEP is a black box variational algorithm, in that it does not require any simplifying assumptions on the distribution of interest, beyond the existence of some Monte Carlo sampler for estimating the moments of the EP tilted distributions. Further, as opposed to EP which has no guarantee of convergence, SNEP can be shown to be convergent, even when using Monte Carlo moment estimates. Secondly, we propose a novel architecture for distributed Bayesian learning which we call the posterior server. The posterior server allows scalable and robust Bayesian learning in cases where a data set is stored in a distributed manner across a cluster, with each compute node containing a disjoint subset of data. An independent Monte Carlo sampler is run on each compute node, with direct access only to the local data subset, but which targets an approximation to the global posterior distribution given all data across the whole cluster. This is achieved by using a distributed asynchronous implementation of SNEP to pass messages across the cluster. We demonstrate SNEP and the posterior server on distributed Bayesian learning of logistic regression and neural networks. Keywords: Distributed Learning, Large Scale Learning, Deep Learning, Bayesian Learn- ing, Variational Inference, Expectation Propagation, Stochastic Approximation, Natural Gradient, Markov chain Monte Carlo, Parameter Server, Posterior Server.

MLSep 1, 2014
Consistency and fluctuations for stochastic gradient Langevin dynamics

Yee Whye Teh, Alexandre Thiéry, Sebastian Vollmer

Applying standard Markov chain Monte Carlo (MCMC) algorithms to large data sets is computationally expensive. Both the calculation of the acceptance probability and the creation of informed proposals usually require an iteration through the whole data set. The recently proposed stochastic gradient Langevin dynamics (SGLD) method circumvents this problem by generating proposals which are only based on a subset of the data, by skipping the accept-reject step and by using decreasing step-sizes sequence $(δ_m)_{m \geq 0}$. %Under appropriate Lyapunov conditions, We provide in this article a rigorous mathematical framework for analysing this algorithm. We prove that, under verifiable assumptions, the algorithm is consistent, satisfies a central limit theorem (CLT) and its asymptotic bias-variance decomposition can be characterized by an explicit functional of the step-sizes sequence $(δ_m)_{m \geq 0}$. We leverage this analysis to give practical recommendations for the notoriously difficult tuning of this algorithm: it is asymptotically optimal to use a step-size sequence of the type $δ_m \asymp m^{-1/3}$, leading to an algorithm whose mean squared error (MSE) decreases at rate $\mathcal{O}(m^{-1/3})$