Stefan Heindorf

Caglar Demir, Michel Wiebesiek, Renzhong Lu et al.

Most real-world knowledge graphs, including Wikidata, DBpedia, and Yago are incomplete. Answering queries on such incomplete graphs is an important, but challenging problem. Recently, a number of approaches, including complex query decomposition (CQD), have been proposed to answer complex, multi-hop queries with conjunctions and disjunctions on such graphs. However, all state-of-the-art approaches only consider graphs consisting of entities and relations, neglecting literal values. In this paper, we propose LitCQD -- an approach to answer complex, multi-hop queries where both the query and the knowledge graph can contain numeric literal values: LitCQD can answer queries having numerical answers or having entity answers satisfying numerical constraints. For example, it allows to query (1)~persons living in New York having a certain age, and (2)~the average age of persons living in New York. We evaluate LitCQD on query types with and without literal values. To evaluate LitCQD, we generate complex, multi-hop queries and their expected answers on a version of the FB15k-237 dataset that was extended by literal values.

N'Dah Jean Kouagou, Caglar Demir, Hamada M. Zahera et al.

A variety of knowledge graph embedding approaches have been developed. Most of them obtain embeddings by learning the structure of the knowledge graph within a link prediction setting. As a result, the embeddings reflect only the structure of a single knowledge graph, and embeddings for different knowledge graphs are not aligned, e.g., they cannot be used to find similar entities across knowledge graphs via nearest neighbor search. However, knowledge graph embedding applications such as entity disambiguation require a more global representation, i.e., a representation that is valid across multiple sources. We propose to learn universal knowledge graph embeddings from large-scale interlinked knowledge sources. To this end, we fuse large knowledge graphs based on the owl:sameAs relation such that every entity is represented by a unique identity. We instantiate our idea by computing universal embeddings based on DBpedia and Wikidata yielding embeddings for about 180 million entities, 15 thousand relations, and 1.2 billion triples. We believe our computed embeddings will support the emerging field of graph foundation models. Moreover, we develop a convenient API to provide embeddings as a service. Experiments on link prediction suggest that universal knowledge graph embeddings encode better semantics compared to embeddings computed on a single knowledge graph. For reproducibility purposes, we provide our source code and datasets open access.

Leonie Nora Sieger, Stefan Heindorf, Yasir Mahmood et al.

Knowledge bases are widely used for information management, enabling high-impact applications such as web search, question answering, and natural language processing. They also serve as the backbone for automatic decision systems, e.g., for medical diagnostics and credit scoring. As stakeholders affected by these decisions would like to understand their situation and verify how fair the decisions are, a number of explanation approaches have been proposed. An intrinsically transparent way to do classification is by using concepts in description logics. However, these concepts can become long and difficult to fathom for non-experts, even when verbalized. One solution is to employ counterfactuals to answer the question, ``How must feature values be changed to obtain a different classification?'' By focusing on the minimal feature changes, the explanations are short, human-friendly, and provide a clear path of action regarding the change in prediction. While previous work investigated counterfactuals for tabular data, in this paper, we transfer the notion of counterfactuals to knowledge bases and the description logic $\mathcal{ELH}$. Our approach starts by generating counterfactual candidates from concepts, followed by selecting the candidates requiring the fewest feature changes as counterfactuals. When multiple counterfactuals exist, we rank them based on the likeliness of their feature combinations. We evaluate our method by conducting a user survey to determine which counterfactual candidates participants prefer for explanation.

Lukas Blübaum, Stefan Heindorf

Causal questions inquire about causal relationships between different events or phenomena. They are important for a variety of use cases, including virtual assistants and search engines. However, many current approaches to causal question answering cannot provide explanations or evidence for their answers. Hence, in this paper, we aim to answer causal questions with a causality graph, a large-scale dataset of causal relations between noun phrases along with the relations' provenance data. Inspired by recent, successful applications of reinforcement learning to knowledge graph tasks, such as link prediction and fact-checking, we explore the application of reinforcement learning on a causality graph for causal question answering. We introduce an Actor-Critic-based agent which learns to search through the graph to answer causal questions. We bootstrap the agent with a supervised learning procedure to deal with large action spaces and sparse rewards. Our evaluation shows that the agent successfully prunes the search space to answer binary causal questions by visiting less than 30 nodes per question compared to over 3,000 nodes by a naive breadth-first search. Our ablation study indicates that our supervised learning strategy provides a strong foundation upon which our reinforcement learning agent improves. The paths returned by our agent explain the mechanisms by which a cause produces an effect. Moreover, for each edge on a path, our causality graph provides its original source allowing for easy verification of paths.

Caglar Demir, Alkid Baci, N'Dah Jean Kouagou et al.

In this paper, we present Ontolearn-a framework for learning OWL class expressions over large knowledge graphs. Ontolearn contains efficient implementations of recent stateof-the-art symbolic and neuro-symbolic class expression learners including EvoLearner and DRILL. A learned OWL class expression can be used to classify instances in the knowledge graph. Furthermore, Ontolearn integrates a verbalization module based on an LLM to translate complex OWL class expressions into natural language sentences. By mapping OWL class expressions into respective SPARQL queries, Ontolearn can be easily used to operate over a remote triplestore. The source code of Ontolearn is available at https://github.com/dice-group/Ontolearn.

N'Dah Jean Kouagou, Stefan Heindorf, Caglar Demir et al.

Many applications require explainable node classification in knowledge graphs. Towards this end, a popular ``white-box'' approach is class expression learning: Given sets of positive and negative nodes, class expressions in description logics are learned that separate positive from negative nodes. Most existing approaches are search-based approaches generating many candidate class expressions and selecting the best one. However, they often take a long time to find suitable class expressions. In this paper, we cast class expression learning as a translation problem and propose a new family of class expression learning approaches which we dub neural class expression synthesizers. Training examples are ``translated'' into class expressions in a fashion akin to machine translation. Consequently, our synthesizers are not subject to the runtime limitations of search-based approaches. We study three instances of this novel family of approaches based on LSTMs, GRUs, and set transformers, respectively. An evaluation of our approach on four benchmark datasets suggests that it can effectively synthesize high-quality class expressions with respect to the input examples in approximately one second on average. Moreover, a comparison to state-of-the-art approaches suggests that we achieve better F-measures on large datasets. For reproducibility purposes, we provide our implementation as well as pretrained models in our public GitHub repository at https://github.com/dice-group/NeuralClassExpressionSynthesis

N'Dah Jean Kouagou, Stefan Heindorf, Caglar Demir et al.

Concept learning approaches based on refinement operators explore partially ordered solution spaces to compute concepts, which are used as binary classification models for individuals. However, the number of concepts explored by these approaches can grow to the millions for complex learning problems. This often leads to impractical runtimes. We propose to alleviate this problem by predicting the length of target concepts before the exploration of the solution space. By these means, we can prune the search space during concept learning. To achieve this goal, we compare four neural architectures and evaluate them on four benchmarks. Our evaluation results suggest that recurrent neural network architectures perform best at concept length prediction with a macro F-measure ranging from 38% to 92%. We then extend the CELOE algorithm, which learns ALC concepts, with our concept length predictor. Our extension yields the algorithm CLIP. In our experiments, CLIP is at least 7.5 times faster than other state-of-the-art concept learning algorithms for ALC -- including CELOE -- and achieves significant improvements in the F-measure of the concepts learned on 3 out of 4 datasets. For reproducibility, we provide our implementation in the public GitHub repository at https://github.com/dice-group/LearnALCLengths.

Caglar Demir, Diego Moussallem, Stefan Heindorf et al.

Knowledge graph embedding research has mainly focused on the two smallest normed division algebras, $\mathbb{R}$ and $\mathbb{C}$. Recent results suggest that trilinear products of quaternion-valued embeddings can be a more effective means to tackle link prediction. In addition, models based on convolutions on real-valued embeddings often yield state-of-the-art results for link prediction. In this paper, we investigate a composition of convolution operations with hypercomplex multiplications. We propose the four approaches QMult, OMult, ConvQ and ConvO to tackle the link prediction problem. QMult and OMult can be considered as quaternion and octonion extensions of previous state-of-the-art approaches, including DistMult and ComplEx. ConvQ and ConvO build upon QMult and OMult by including convolution operations in a way inspired by the residual learning framework. We evaluated our approaches on seven link prediction datasets including WN18RR, FB15K-237 and YAGO3-10. Experimental results suggest that the benefits of learning hypercomplex-valued vector representations become more apparent as the size and complexity of the knowledge graph grows. ConvO outperforms state-of-the-art approaches on FB15K-237 in MRR, Hit@1 and Hit@3, while QMult, OMult, ConvQ and ConvO outperform state-of-the-approaches on YAGO3-10 in all metrics. Results also suggest that link prediction performances can be further improved via prediction averaging. To foster reproducible research, we provide an open-source implementation of approaches, including training and evaluation scripts as well as pretrained models.

Martin Potthast, Stefan Heindorf, Hannah Bast

The WSDM Cup 2017 was a data mining challenge held in conjunction with the 10th International Conference on Web Search and Data Mining (WSDM). It addressed key challenges of knowledge bases today: quality assurance and entity search. For quality assurance, we tackle the task of vandalism detection, based on a dataset of more than 82 million user-contributed revisions of the Wikidata knowledge base, all of which annotated with regard to whether or not they are vandalism. For entity search, we tackle the task of triple scoring, using a dataset that comprises relevance scores for triples from type-like relations including occupation and country of citizenship, based on about 10,000 human relevance judgements. For reproducibility sake, participants were asked to submit their software on TIRA, a cloud-based evaluation platform, and they were incentivized to share their approaches open source.

Stefan Heindorf, Martin Potthast, Gregor Engels et al.

We report on the Wikidata vandalism detection task at the WSDM Cup 2017. The task received five submissions for which this paper describes their evaluation and a comparison to state of the art baselines. Unlike previous work, we recast Wikidata vandalism detection as an online learning problem, requiring participant software to predict vandalism in near real-time. The best-performing approach achieves a ROC-AUC of 0.947 at a PR-AUC of 0.458. In particular, this task was organized as a software submission task: to maximize reproducibility as well as to foster future research and development on this task, the participants were asked to submit their working software to the TIRA experimentation platform along with the source code for open source release.

Lea-Marie Sussek, Stefan Heindorf

Temporal Graph Neural Networks (TGNNs) have become increasingly popular in recent years due to their superior predictive performance by combining both spatial and temporal information. However, how these models utilize the information to make predictions is rather unexplored, leading to potentially faulty or biased models. This work introduces two novel model-agnostic explainers for local explanations of TGNNs based on Shapley and Owen values. The first method, an event-level (edge-level) Shapley explainer, applies the KernelSHAP algorithm to estimate contribution scores for individual temporal events, providing interpretable descriptions for model behavior. The second, a feature-level Shapley explainer, extends this framework by decomposing event-level Shapley values into Owen values, and thereby uncovers hierarchical dependencies of the event and its features. The explainers outperform SOTA explainers on different metrics and datasets. Additionally, the Feature Explainer reveals a faulty extraction of actual timestamps of a commonly used TGAT implementation, helping to further understand performance drops on very sparse explanations.

Dominik Köhler, Stefan Heindorf

Graph Neural Networks (GNNs) are effective for node classification in graph-structured data, but they lack explainability, especially at the global level. Current research mainly utilizes subgraphs of the input as local explanations or generates new graphs as global explanations. However, these graph-based methods are limited in their ability to explain classes with multiple sufficient explanations. To provide more expressive explanations, we propose utilizing class expressions (CEs) from the field of description logic (DL). Our approach explains heterogeneous graphs with different types of nodes using CEs in the EL description logic. To identify the best explanation among multiple candidate explanations, we employ and compare two different scoring functions: (1) For a given CE, we construct multiple graphs, have the GNN make a prediction for each graph, and aggregate the predicted scores. (2) We score the CE in terms of fidelity, i.e., we compare the predictions of the GNN to the predictions by the CE on a separate validation set. Instead of subgraph-based explanations, we offer CE-based explanations.

Louis Mozart Kamdem Teyou, Luke Friedrichs, N'Dah Jean Kouagou et al.

Concept learning exploits background knowledge in the form of description logic axioms to learn explainable classification models from knowledge bases. Despite recent breakthroughs in neuro-symbolic concept learning, most approaches still cannot be deployed on real-world knowledge bases. This is due to their use of description logic reasoners, which are not robust against inconsistencies nor erroneous data. We address this challenge by presenting a novel neural reasoner dubbed EBR. Our reasoner relies on embeddings to approximate the results of a symbolic reasoner. We show that EBR solely requires retrieving instances for atomic concepts and existential restrictions to retrieve or approximate the set of instances of any concept in the description logic $\mathcal{SHOIQ}$. In our experiments, we compare EBR with state-of-the-art reasoners. Our results suggest that EBR is robust against missing and erroneous data in contrast to existing reasoners.

Parsa Abbasi, Stefan Heindorf

Complex query answering (CQA) goes beyond the well-studied link prediction task by addressing more sophisticated queries that require multi-hop reasoning over incomplete knowledge graphs (KGs). Research on neural and neurosymbolic CQA methods is still an emerging field. Almost all of these methods can be regarded as black-box models, which may raise concerns about user trust. Although neurosymbolic approaches like CQD are slightly more interpretable, allowing intermediate results to be tracked, the importance of different parts of the query remains unexplained. In this paper, we propose CQD-SHAP, a novel framework that computes the contribution of each query part to the ranking of a specific answer. This contribution explains the value of leveraging a neural predictor that can infer new knowledge from an incomplete KG, rather than a symbolic approach relying solely on existing facts in the KG. CQD-SHAP is formulated based on Shapley values from cooperative game theory and satisfies all the fundamental Shapley axioms. Automated evaluation of these explanations in terms of necessary and sufficient explanations, and comparisons with various baselines, shows the effectiveness of this approach for most query types.

Pallabee Das, Stefan Heindorf

Many real-world datasets, such as citation networks, social networks, and molecular structures, are naturally represented as heterogeneous graphs, where nodes belong to different types and have additional features. For example, in a citation network, nodes representing "Paper" or "Author" may include attributes like keywords or affiliations. A critical machine learning task on these graphs is node classification, which is useful for applications such as fake news detection, corporate risk assessment, and molecular property prediction. Although Heterogeneous Graph Neural Networks (HGNNs) perform well in these contexts, their predictions remain opaque. Existing post-hoc explanation methods lack support for actual node features beyond one-hot encoding of node type and often fail to generate realistic, faithful explanations. To address these gaps, we propose DiGNNExplainer, a model-level explanation approach that synthesizes heterogeneous graphs with realistic node features via discrete denoising diffusion. In particular, we generate realistic discrete features (e.g., bag-of-words features) using diffusion models within a discrete space, whereas previous approaches are limited to continuous spaces. We evaluate our approach on multiple datasets and show that DiGNNExplainer produces explanations that are realistic and faithful to the model's decision-making, outperforming state-of-the-art methods.

Stefan Heindorf, Lukas Blübaum, Nick Düsterhus et al.

Classifying nodes in knowledge graphs is an important task, e.g., for predicting missing types of entities, predicting which molecules cause cancer, or predicting which drugs are promising treatment candidates. While black-box models often achieve high predictive performance, they are only post-hoc and locally explainable and do not allow the learned model to be easily enriched with domain knowledge. Towards this end, learning description logic concepts from positive and negative examples has been proposed. However, learning such concepts often takes a long time and state-of-the-art approaches provide limited support for literal data values, although they are crucial for many applications. In this paper, we propose EvoLearner - an evolutionary approach to learn concepts in ALCQ(D), which is the attributive language with complement (ALC) paired with qualified cardinality restrictions (Q) and data properties (D). We contribute a novel initialization method for the initial population: starting from positive examples, we perform biased random walks and translate them to description logic concepts. Moreover, we improve support for data properties by maximizing information gain when deciding where to split the data. We show that our approach significantly outperforms the state of the art on the benchmarking framework SML-Bench for structured machine learning. Our ablation study confirms that this is due to our novel initialization method and support for data properties.