Runzhao Yang

Runzhao Yang, Tingxiong Xiao, Yuxiao Cheng et al. · tsinghua

Implicit neural representation (INR) can describe the target scenes with high fidelity using a small number of parameters, and is emerging as a promising data compression technique. However, limited spectrum coverage is intrinsic to INR, and it is non-trivial to remove redundancy in diverse complex data effectively. Preliminary studies can only exploit either global or local correlation in the target data and thus of limited performance. In this paper, we propose a Tree-structured Implicit Neural Compression (TINC) to conduct compact representation for local regions and extract the shared features of these local representations in a hierarchical manner. Specifically, we use Multi-Layer Perceptrons (MLPs) to fit the partitioned local regions, and these MLPs are organized in tree structure to share parameters according to the spatial distance. The parameter sharing scheme not only ensures the continuity between adjacent regions, but also jointly removes the local and non-local redundancy. Extensive experiments show that TINC improves the compression fidelity of INR, and has shown impressive compression capabilities over commercial tools and other deep learning based methods. Besides, the approach is of high flexibility and can be tailored for different data and parameter settings. The source code can be found at https://github.com/RichealYoung/TINC .

Runzhao Yang, Tingxiong Xiao, Yuxiao Cheng et al. · tsinghua

Massive collection and explosive growth of biomedical data, demands effective compression for efficient storage, transmission and sharing. Readily available visual data compression techniques have been studied extensively but tailored for natural images/videos, and thus show limited performance on biomedical data which are of different features and larger diversity. Emerging implicit neural representation (INR) is gaining momentum and demonstrates high promise for fitting diverse visual data in target-data-specific manner, but a general compression scheme covering diverse biomedical data is so far absent. To address this issue, we firstly derive a mathematical explanation for INR's spectrum concentration property and an analytical insight on the design of INR based compressor. Further, we propose a Spectrum Concentrated Implicit neural compression (SCI) which adaptively partitions the complex biomedical data into blocks matching INR's concentrated spectrum envelop, and design a funnel shaped neural network capable of representing each block with a small number of parameters. Based on this design, we conduct compression via optimization under given budget and allocate the available parameters with high representation accuracy. The experiments show SCI's superior performance to state-of-the-art methods including commercial compressors, data-driven ones, and INR based counterparts on diverse biomedical data. The source code can be found at https://github.com/RichealYoung/ImplicitNeuralCompression.git.

Yuxiao Cheng, Runzhao Yang, Tingxiong Xiao et al. · tsinghua

Causal discovery from time-series data has been a central task in machine learning. Recently, Granger causality inference is gaining momentum due to its good explainability and high compatibility with emerging deep neural networks. However, most existing methods assume structured input data and degenerate greatly when encountering data with randomly missing entries or non-uniform sampling frequencies, which hampers their applications in real scenarios. To address this issue, here we present CUTS, a neural Granger causal discovery algorithm to jointly impute unobserved data points and build causal graphs, via plugging in two mutually boosting modules in an iterative framework: (i) Latent data prediction stage: designs a Delayed Supervision Graph Neural Network (DSGNN) to hallucinate and register unstructured data which might be of high dimension and with complex distribution; (ii) Causal graph fitting stage: builds a causal adjacency matrix with imputed data under sparse penalty. Experiments show that CUTS effectively infers causal graphs from unstructured time-series data, with significantly superior performance to existing methods. Our approach constitutes a promising step towards applying causal discovery to real applications with non-ideal observations.

Ruoran Li, Runzhao Yang, Wenxin Xiang et al. · tsinghua

Functional Magnetic Resonance Imaging (fMRI) data is a widely used kind of four-dimensional biomedical data, which requires effective compression. However, fMRI compressing poses unique challenges due to its intricate temporal dynamics, low signal-to-noise ratio, and complicated underlying redundancies. This paper reports a novel compression paradigm specifically tailored for fMRI data based on Implicit Neural Representation (INR). The proposed approach focuses on removing the various redundancies among the time series by employing several methods, including (i) conducting spatial correlation modeling for intra-region dynamics, (ii) decomposing reusable neuronal activation patterns, and (iii) using proper initialization together with nonlinear fusion to describe the inter-region similarity. This scheme appropriately incorporates the unique features of fMRI data, and experimental results on publicly available datasets demonstrate the effectiveness of the proposed method, surpassing state-of-the-art algorithms in both conventional image quality evaluation metrics and fMRI downstream tasks. This work in this paper paves the way for sharing massive fMRI data at low bandwidth and high fidelity.

Tingxiong Xiao, Runzhao Yang, Yuxiao Cheng et al.

Solving partial differential equations (PDEs) has been a fundamental problem in computational science and of wide applications for both scientific and engineering research. Due to its universal approximation property, neural network is widely used to approximate the solutions of PDEs. However, existing works are incapable of solving high-order PDEs due to insufficient calculation accuracy of higher-order derivatives, and the final network is a black box without explicit explanation. To address these issues, we propose a deep learning framework to solve high-order PDEs, named SHoP. Specifically, we derive the high-order derivative rule for neural network, to get the derivatives quickly and accurately; moreover, we expand the network into a Taylor series, providing an explicit solution for the PDEs. We conduct experimental validations four high-order PDEs with different dimensions, showing that we can solve high-order PDEs efficiently and accurately.