Jean‐Daniel Zucker

Alex Lence, Ahmad Fall, Samuel David Cohen et al.

Electrocardiograms (ECGs) are essential for diagnosing cardiac pathologies, yet traditional paper-based ECG storage poses significant challenges for automated analysis. This study introduces ECGtizer, an open-source, fully automated tool designed to digitize paper ECGs and recover signals lost during storage. ECGtizer facilitates automated analyses using modern AI methods. It employs automated lead detection, three pixel-based signal extraction algorithms, and a deep learning-based signal reconstruction module. We evaluated ECGtizer on two datasets: a real-life cohort from the COVID-19 pandemic (JOCOVID) and a publicly available dataset (PTB-XL). Performance was compared with two existing methods: the fully automated ECGminer and the semi-automated PaperECG, which requires human intervention. ECGtizer's performance was assessed in terms of signal recovery and the fidelity of clinically relevant feature measurement. Additionally, we tested these tools on a third dataset (GENEREPOL) for downstream AI tasks. Results show that ECGtizer outperforms existing tools, with its ECGtizerFrag algorithm delivering superior signal recovery. While PaperECG demonstrated better outcomes than ECGminer, it required human input. ECGtizer enhances the usability of historical ECG data and supports advanced AI-based diagnostic methods, making it a valuable addition to the field of AI in ECG analysis.

Patrick Taillandier, Jean Daniel Zucker, Arnaud Grignard et al.

This position paper examines the use of Large Language Models (LLMs) in social simulation, analyzing both their potential and their limitations from a computational social science perspective. The first part reviews recent findings on the ability of LLMs to replicate key aspects of human cognition, including Theory of Mind reasoning and social inference, while also highlighting significant limitations such as cognitive biases, lack of true understanding, and inconsistencies in behavior. The second part surveys emerging applications of LLMs in multi-agent simulation frameworks, focusing on system architectures, scale, and validation strategies. Notable projects such as Generative Agents (Smallville) and AgentSociety are discussed in terms of their design choices, empirical grounding, and methodological innovations. Particular attention is given to the challenges of behavioral fidelity, calibration, and reproducibility in large-scale LLM-driven simulations. The final section distinguishes between contexts where LLMs, like other black-box systems, offer direct value-such as interactive simulations and serious games-and those where their use is more problematic, notably in explanatory or predictive modeling. The paper concludes by advocating for hybrid approaches that integrate LLMs into traditional agent-based modeling platforms (GAMA, Netlogo, etc), enabling modelers to combine the expressive flexibility of language-based reasoning with the transparency and analytical rigor of classical rule-based systems.

Miao Lin-Zucker, Joël Bellassen, Jean-Daniel Zucker

The use of chatbots in language learning has evolved significantly since the 1960s, becoming more sophisticated platforms as generative AI emerged. These tools now simulate natural conversations, adapting to individual learners' needs, including those studying Chinese. Our study explores how learners can use specific prompts to engage Large Language Models (LLM) as personalized chatbots, aiming to target their language level based on the Common European Framework of Reference for Languages (CEFR) and the European Benchmarking Chinese Language (EBCL) project. Focusing on A1, A1+ and A2 levels, we examine the teaching of Chinese, which presents unique challenges due to its logographic writing system. Our goal is to develop prompts that integrate oral and written skills, using high-frequency character lists and controlling oral lexical productions. These tools, powered by generative AI, aim to enhance language practice by crossing lexical and sinographic recurrence. While generative AI shows potential as a personalized tutor, further evaluation is needed to assess its effectiveness. We conducted a systematic series of experiments using ChatGPT models to evaluate their adherence to constraints specified in the prompts. The results indicate that incorporating level A1 and A1+ characters, along with the associated reference list, significantly enhances compliance with the EBCL character set. Properly prompted, LLMs can increase exposure to the target language and offer interactive exchanges to develop language skills.

Youcef Sklab, Florian Castanet, Hanane Ariouat et al.

Deep learning-based classification of herbarium images is hampered by background heterogeneity, which introduces noise and artifacts that can potentially mislead models and reduce classification accuracy. Addressing these background-related challenges is critical to improving model performance. We introduce PlantSAM, an automated segmentation pipeline that integrates YOLOv10 for plant region detection and the Segment Anything Model (SAM2) for segmentation. YOLOv10 generates bounding box prompts to guide SAM2, enhancing segmentation accuracy. Both models were fine-tuned on herbarium images and evaluated using Intersection over Union (IoU) and Dice coefficient metrics. PlantSAM achieved state-of-the-art segmentation performance, with an IoU of 0.94 and a Dice coefficient of 0.97. Incorporating segmented images into classification models led to consistent performance improvements across five tested botanical traits, with accuracy gains of up to 4.36% and F1-score improvements of 4.15%. Our findings highlight the importance of background removal in herbarium image analysis, as it significantly enhances classification accuracy by allowing models to focus more effectively on the foreground plant structures.

Ahmad Fall, Federica Granese, Alex Lence et al.

Monitoring and analyzing electrocardiogram (ECG) signals, even under varying physiological conditions, including those influenced by physical activity, drugs and stress, is crucial to accurately assess cardiac health. However, current AI-based methods often fail to account for how these factors interact and alter ECG patterns, ultimately limiting their applicability in real-world settings. This study introduces IKrNet, a novel neural network model, which identifies drug-specific patterns in ECGs amidst certain physiological conditions. IKrNet's architecture incorporates spatial and temporal dynamics by using a convolutional backbone with varying receptive field size to capture spatial features. A bi-directional Long Short-Term Memory module is also employed to model temporal dependencies. By treating heart rate variability as a surrogate for physiological fluctuations, we evaluated IKrNet's performance across diverse scenarios, including conditions with physical stress, drug intake alone, and a baseline without drug presence. Our assessment follows a clinical protocol in which 990 healthy volunteers were administered 80mg of Sotalol, a drug which is known to be a precursor to Torsades-de-Pointes, a life-threatening arrhythmia. We show that IKrNet outperforms state-of-the-art models' accuracy and stability in varying physiological conditions, underscoring its clinical viability.

Thanh Hai Nguyen, Edi Prifti, Yann Chevaleyre et al.

Deep learning (DL) techniques have shown unprecedented success when applied to images, waveforms, and text. Generally, when the sample size ($N$) is much bigger than the number of features ($d$), DL often outperforms other machine learning (ML) techniques, often through the use of Convolutional Neural Networks (CNNs). However, in many bioinformatics fields (including metagenomics), we encounter the opposite situation where $d$ is significantly greater than $N$. In these situations, applying DL techniques would lead to severe overfitting. Here we aim to improve classification of various diseases with metagenomic data through the use of CNNs. For this we proposed to represent metagenomic data as images. The proposed Met2Img approach relies on taxonomic and t-SNE embeddings to transform abundance data into "synthetic images". We applied our approach to twelve benchmark data sets including more than 1400 metagenomic samples. Our results show significant improvements over the state-of-the-art algorithms (Random Forest (RF), Support Vector Machine (SVM)). We observe that the integration of phylogenetic information alongside abundance data improves classification. The proposed approach is not only important in classification setting but also allows to visualize complex metagenomic data. The Met2Img is implemented in Python.

Thanh Hai Nguyen, Yann Chevaleyre, Edi Prifti et al.

Deep learning (DL) techniques have had unprecedented success when applied to images, waveforms, and texts to cite a few. In general, when the sample size (N) is much greater than the number of features (d), DL outperforms previous machine learning (ML) techniques, often through the use of convolution neural networks (CNNs). However, in many bioinformatics ML tasks, we encounter the opposite situation where d is greater than N. In these situations, applying DL techniques (such as feed-forward networks) would lead to severe overfitting. Thus, sparse ML techniques (such as LASSO e.g.) usually yield the best results on these tasks. In this paper, we show how to apply CNNs on data which do not have originally an image structure (in particular on metagenomic data). Our first contribution is to show how to map metagenomic data in a meaningful way to 1D or 2D images. Based on this representation, we then apply a CNN, with the aim of predicting various diseases. The proposed approach is applied on six different datasets including in total over 1000 samples from various diseases. This approach could be a promising one for prediction tasks in the bioinformatics field.

Jean-Baptiste Lamy, Anis Ellini, Vahid Ebrahiminia et al.

Well-designed medical decision support system (DSS) have been shown to improve health care quality. However, before they can be used in real clinical situations, these systems must be extensively tested, to ensure that they conform to the clinical guidelines (CG) on which they are based. Existing methods cannot be used for the systematic testing of all possible test cases. We describe here a new exhaustive dynamic verification method. In this method, the DSS is considered to be a black box, and the Quinlan C4.5 algorithm is used to build a decision tree from an exhaustive set of DSS input vectors and outputs. This method was successfully used for the testing of a medical DSS relating to chronic diseases: the ASTI critiquing module for type 2 diabetes.