Sooyeon Ji

Juhyung Park, Dongwon Park, Sooyeon Ji et al.

Deep learning-based denoising methods have shown powerful results for improving the signal-to-noise ratio of magnetic resonance (MR) images, mostly by leveraging supervised learning with clean ground truth. However, acquiring clean ground truth images is often expensive and time-consuming. Self supervised methods have been widely investigated to mitigate the dependency on clean images, but mostly rely on the suboptimal splitting of K-space measurements of an image to yield input and target images for ensuring statistical independence. In this study, we investigate an alternative self-supervised training method for deep denoisers in multi-coil MRI, dubbed Coil2Coil (C2C), that naturally split and combine the multi-coil data among phased array coils, generating two noise-corrupted images for training. This novel approach allows exploiting multi-coil redundancy, but the images are statistically correlated and may not have the same clean image. To mitigate these issues, we propose the methods to pproximately decorrelate the statistical dependence of these images and match the underlying clean images, thus enabling them to be used as the training pairs. For synthetic denoising experiments, C2C yielded the best performance against prior self-supervised methods, reporting outcome comparable even to supervised methods. For real-world denoising cases, C2C yielded consistent performance as synthetic cases, removing only noise structures.

Rokgi Hong, Hongjun An, Sooyeon Ji et al.

Developing an MR sequence is challenging and remains largely constrained by human intuition. Recently, AI-driven approaches have been proposed; however, most require an initial sequence for parameter optimization or extensive training datasets, limiting their general applicability. In this study, we propose "Sequence Search," an automated sequence design framework based on neural architecture search. The method takes tissue properties, imaging parameters, and design objectives as inputs and generates pulse sequences satisfying the design objectives, without requiring prior knowledge of conventional sequence structures. Sequence Search iteratively generates candidate sequences through neural architecture search and optimizes them via a differentiable Bloch simulator and objective-specific loss functions using gradient-based learning. The framework successfully replicated conventional spin-echo, T2-weighted spin-echo, and inversion recovery sequences. Less intuitive solutions were also discovered, such as three-RF spin-echo-like sequences with reduced RF energy and refocusing phases deviating from the conventional Hahn-echo. This work establishes a generalizable framework for automated MR sequence design, highlighting the potential to explore configurations beyond conventional designs based on human intuition.

Taechang Kim, Sooyeon Ji, Kyeongseon Min et al.

$χ$-separation is an advanced quantitative susceptibility mapping (QSM) method that is designed to generate paramagnetic ($χ_{para}$) and diamagnetic ($|χ_{dia}|$) susceptibility maps, reflecting the distribution of iron and myelin in the brain. However, vessels have shown artifacts, interfering with the accurate quantification of iron and myelin in applications. To address this challenge, a new vessel segmentation method for $χ$-separation is developed. The method comprises three steps: 1) Seed generation from $\textit{R}_2^*$ and the product of $χ_{para}$ and $|χ_{dia}|$ maps; 2) Region growing, guided by vessel geometry, creating a vessel mask; 3) Refinement of the vessel mask by excluding non-vessel structures. The performance of the method was compared to conventional vessel segmentation methods both qualitatively and quantitatively. To demonstrate the utility of the method, it was tested in two applications: quantitative evaluation of a neural network-based $χ$-separation reconstruction method ($χ$-sepnet-$\textit{R}_2^*$) and population-averaged region of interest (ROI) analysis. The proposed method demonstrates superior performance to the conventional vessel segmentation methods, effectively excluding the non-vessel structures, achieving the highest Dice score coefficient. For the applications, applying vessel masks report notable improvements for the quantitative evaluation of $χ$-sepnet-$\textit{R}_2^*$ and statistically significant differences in population-averaged ROI analysis. These applications suggest excluding vessels when analyzing the $χ$-separation maps provide more accurate evaluations. The proposed method has the potential to facilitate various applications, offering reliable analysis through the generation of a high-quality vessel mask.

Dongmyung Shin, Sooyeon Ji, Doohee Lee et al.

A novel approach of applying deep reinforcement learning to an RF pulse design is introduced. This method, which is referred to as DeepRF_SLR, is designed to minimize the peak amplitude or, equivalently, minimize the pulse duration of a multiband refocusing pulse generated by the Shinar Le-Roux (SLR) algorithm. In the method, the root pattern of SLR polynomial, which determines the RF pulse shape, is optimized by iterative applications of deep reinforcement learning and greedy tree search. When tested for the designs of the multiband factors of three and seven RFs, DeepRF_SLR demonstrated improved performance compared to conventional methods, generating shorter duration RF pulses in shorter computational time. In the experiments, the RF pulse from DeepRF_SLR produced a slice profile similar to the minimum-phase SLR RF pulse and the profiles matched to that of the computer simulation. Our approach suggests a new way of designing an RF by applying a machine learning algorithm, demonstrating a machine-designed MRI sequence.