Edouardo Honig

Andrew Lizarraga, Brandon Taraku, Edouardo Honig et al.

Given the complex geometry of white matter streamlines, Autoencoders have been proposed as a dimension-reduction tool to simplify the analysis streamlines in a low-dimensional latent spaces. However, despite these recent successes, the majority of encoder architectures only perform dimension reduction on single streamlines as opposed to a full bundle of streamlines. This is a severe limitation of the encoder architecture that completely disregards the global geometric structure of streamlines at the expense of individual fibers. Moreover, the latent space may not be well structured which leads to doubt into their interpretability. In this paper we propose a novel Differentiable Vector Quantized Variational Autoencoder, which are engineered to ingest entire bundles of streamlines as single data-point and provides reliable trustworthy encodings that can then be later used to analyze streamlines in the latent space. Comparisons with several state of the art Autoencoders demonstrate superior performance in both encoding and synthesis.

Deqian Kong, Minglu Zhao, Aoyang Qin et al.

Standard chain-of-thought reasoning generates a solution in a single forward pass, committing irrevocably to each token and lacking a mechanism to recover from early errors. We introduce Inference-Time Rethinking, a generative framework that enables iterative self-correction by decoupling declarative latent thought vectors from procedural generation. We factorize reasoning into a continuous latent thought vector (what to reason about) and a decoder that verbalizes the trace conditioned on this vector (how to reason). Beyond serving as a declarative buffer, latent thought vectors compress the reasoning structure into a continuous representation that abstracts away surface-level token variability, making gradient-based optimization over reasoning strategies well-posed. Our prior model maps unstructured noise to a learned manifold of valid reasoning patterns, and at test time we employ a Gibbs-style procedure that alternates between generating a candidate trace and optimizing the latent vector to better explain that trace, effectively navigating the latent manifold to refine the reasoning strategy. Training a 0.2B-parameter model from scratch on GSM8K, our method with 30 rethinking iterations surpasses baselines with 10 to 15 times more parameters, including a 3B counterpart. This result demonstrates that effective mathematical reasoning can emerge from sophisticated inference-time computation rather than solely from massive parameter counts.

Deqian Kong, Minglu Zhao, Dehong Xu et al.

We propose a novel class of language models, Latent Thought Models (LTMs), which incorporate explicit latent thought vectors that follow an explicit prior model in latent space. These latent thought vectors guide the autoregressive generation of ground tokens through a Transformer decoder. Training employs a dual-rate optimization process within the classical variational Bayes framework: fast learning of local variational parameters for the posterior distribution of latent vectors (inference-time computation), and slow learning of global decoder parameters. Empirical studies reveal that LTMs possess additional scaling dimensions beyond traditional Large Language Models (LLMs), such as the number of iterations in inference-time computation and number of latent thought vectors. Higher sample efficiency can be achieved by increasing training compute per token, with further gains possible by trading model size for more inference steps. Designed based on these scaling properties, LTMs demonstrate superior sample and parameter efficiency compared to autoregressive models and discrete diffusion models. They significantly outperform these counterparts in validation perplexity and zero-shot language modeling tasks. Additionally, LTMs exhibit emergent few-shot in-context reasoning capabilities that scale with model size, and achieve competitive performance in conditional and unconditional text generation.

Deqian Kong, Yuhao Huang, Jianwen Xie et al.

This work explores the challenging problem of molecule design by framing it as a conditional generative modeling task, where target biological properties or desired chemical constraints serve as conditioning variables. We propose the Latent Prompt Transformer (LPT), a novel generative model comprising three components: (1) a latent vector with a learnable prior distribution modeled by a neural transformation of Gaussian white noise; (2) a molecule generation model based on a causal Transformer, which uses the latent vector as a prompt; and (3) a property prediction model that predicts a molecule's target properties and/or constraint values using the latent prompt. LPT can be learned by maximum likelihood estimation on molecule-property pairs. During property optimization, the latent prompt is inferred from target properties and constraints through posterior sampling and then used to guide the autoregressive molecule generation. After initial training on existing molecules and their properties, we adopt an online learning algorithm to progressively shift the model distribution towards regions that support desired target properties. Experiments demonstrate that LPT not only effectively discovers useful molecules across single-objective, multi-objective, and structure-constrained optimization tasks, but also exhibits strong sample efficiency.

Edouardo Honig, Andrew Lizarraga, Zijun Frank Zhang et al.

Prompt compression is a promising approach to speeding up language model inference without altering the generative model. Prior works compress prompts into smaller sequences of learned tokens using an encoder that is trained as a LowRank Adaptation (LoRA) of the inference language model. However, we show that the encoder does not need to keep the original language model's architecture to achieve useful compression. We introduce the Attention-Only Compressor (AOC), which learns a prompt compression encoder after removing the multilayer perceptron (MLP) layers in the Transformer blocks of a language model, resulting in an encoder with roughly 67% less parameters compared to the original model. Intriguingly we find that, across a range of compression ratios up to 480x, AOC can better regenerate prompts and outperform a baseline compression encoder that is a LoRA of the inference language model without removing MLP layers. These results demonstrate that the architecture of prompt compression encoders does not need to be identical to that of the original decoder language model, paving the way for further research into architectures and approaches for prompt compression.