Yihe Wang

Yihe Wang, Yu Han, Haishuai Wang et al.

Contrastive representation learning is crucial in medical time series analysis as it alleviates dependency on labor-intensive, domain-specific, and scarce expert annotations. However, existing contrastive learning methods primarily focus on one single data level, which fails to fully exploit the intricate nature of medical time series. To address this issue, we present COMET, an innovative hierarchical framework that leverages data consistencies at all inherent levels in medical time series. Our meticulously designed model systematically captures data consistency from four potential levels: observation, sample, trial, and patient levels. By developing contrastive loss at multiple levels, we can learn effective representations that preserve comprehensive data consistency, maximizing information utilization in a self-supervised manner. We conduct experiments in the challenging patient-independent setting. We compare COMET against six baselines using three diverse datasets, which include ECG signals for myocardial infarction and EEG signals for Alzheimer's and Parkinson's diseases. The results demonstrate that COMET consistently outperforms all baselines, particularly in setup with 10% and 1% labeled data fractions across all datasets. These results underscore the significant impact of our framework in advancing contrastive representation learning techniques for medical time series. The source code is available at https://github.com/DL4mHealth/COMET.

Yihe Wang, Taida Li, Yujun Yan et al.

Cross-subject EEG classification typically achieves significantly lower performance than subject-dependent settings. Although this phenomenon has been widely observed in the literature, the underlying causes have not been systematically studied. In this paper, we design a series of controlled experiments to investigate the mechanisms behind the performance drop in cross-subject EEG classification across different EEG tasks. We show that the performance degradation can generally be attributed to two factors: inter-subject variability and shortcut learning. Specifically, multi-class-per-subject EEG classification tasks, such as motor imagery, emotion recognition, and ERP stimulus classification, are mainly affected by inter-subject variability, whereas single-class-per-subject EEG classification tasks, such as brain disease detection, are primarily influenced by shortcut learning based on subject-specific features. These findings provide new insights into the challenges of cross-subject EEG classification and emphasize the importance of appropriate evaluation protocols in EEG research. The code is available at https://github.com/DL4mHealth/EEG-Cross-Subject.

Yihe Wang, Zhiqiao Kang, Bohan Chen et al.

Event-related potential (ERP), a specialized paradigm of electroencephalographic (EEG), reflects neurological responses to external stimuli or events, generally associated with the brain's processing of specific cognitive tasks. ERP plays a critical role in cognitive analysis, the detection of neurological diseases, and the assessment of psychological states. Recent years have seen substantial advances in deep learning-based methods for spontaneous EEG and other non-time-locked task-related EEG signals. However, their effectiveness on ERP data remains underexplored, and many existing ERP studies still rely heavily on manually extracted features. In this paper, we conduct a comprehensive benchmark study that systematically compares traditional manual features (followed by a linear classifier), deep learning models, and pre-trained EEG foundation models for ERP analysis. We establish a unified data preprocessing and training pipeline and evaluate these approaches on two representative tasks, ERP stimulus classification and ERP-based brain disease detection, across 12 publicly available datasets. Furthermore, we investigate various token-embedding strategies within advanced Transformer architectures to identify embedding designs that better suit ERP data. Our study provides a landmark framework to guide method selection and tailored model design for future ERP analysis. The code is available at https://github.com/DL4mHealth/ERP-Benchmark

Mohammad Reza Taesiri, Finlay Macklon, Yihe Wang et al.

Video game testing requires game-specific knowledge as well as common sense reasoning about the events in the game. While AI-driven agents can satisfy the first requirement, it is not yet possible to meet the second requirement automatically. Therefore, video game testing often still relies on manual testing, and human testers are required to play the game thoroughly to detect bugs. As a result, it is challenging to fully automate game testing. In this study, we explore the possibility of leveraging the zero-shot capabilities of large language models for video game bug detection. By formulating the bug detection problem as a question-answering task, we show that large language models can identify which event is buggy in a sequence of textual descriptions of events from a game. To this end, we introduce the GameBugDescriptions benchmark dataset, which consists of 167 buggy gameplay videos and a total of 334 question-answer pairs across 8 games. We extensively evaluate the performance of six models across the OPT and InstructGPT large language model families on our benchmark dataset. Our results show promising results for employing language models to detect video game bugs. With the proper prompting technique, we could achieve an accuracy of 70.66%, and on some video games, up to 78.94%. Our code, evaluation data and the benchmark can be found on https://asgaardlab.github.io/LLMxBugs

Shuo Yin, Yihe Wang, Lancheng Zou et al.

Large language models (LLMs) have shown promise in register-transfer level (RTL) design automation, but direct RTL generation remains difficult to validate, optimize, and integrate with compiler-based hardware design flows. Hardware compiler infrastructures such as CIRCT provide typed intermediate representations, legality checks, and optimization passes, yet current LLMs struggle to emit raw compiler IR because of MLIR syntax, SSA discipline, dialect-specific operations, and strict width constraints. This paper presents CPPL, a compiler-mediated design framework that turns LLM-assisted hardware generation into a statically checkable frontend problem rather than an unconstrained RTL text-generation task. CPPL combines a Python frontend DSL for declaring module interfaces and hierarchy with CPPL IR, a JSON-based circuit IR designed to expose compiler-visible structure while remaining accessible to LLMs. The compiler infers operation widths from declared module ports, validates generated IR, checks hierarchy and port bindings, and deterministically lowers the result to CIRCT for synthesizable Verilog generation. On the RTLLM benchmark, CPPL improves functional correctness over direct Verilog and direct CIRCT IR generation, while CIRCT optimization reduces post-synthesis AIG node counts. These results show that a compiler-mediated interface can make LLM-assisted hardware design more reliable, analyzable, and amenable to backend optimization. CPPL is available at https://github.com/SawyDust1228/CPPL.

Yihe Wang, Nadia Mammone, Darina Petrovsky et al.

Electroencephalography (EEG) has emerged as a cost-effective and efficient tool to support neurologists in the detection of Alzheimer's Disease (AD). However, most existing approaches rely heavily on manual feature engineering or data transformation. While such techniques may provide benefits when working with small-scale datasets, they often lead to information loss and distortion when applied to large-scale data, ultimately limiting model performance. Moreover, the limited subject scale and demographic diversity of datasets used in prior studies hinder comprehensive evaluation of model robustness and generalizability, thus restricting their applicability in real-world clinical settings. To address these challenges, we propose ADformer, a novel multi-granularity spatial-temporal transformer designed to capture both temporal and spatial features from raw EEG signals, enabling effective end-to-end representation learning. Our model introduces multi-granularity embedding strategies across both spatial and temporal dimensions, leveraging a two-stage intra-inter granularity self-attention mechanism to learn both local patterns within each granularity and global dependencies across granularities. We evaluate ADformer on 4 large-scale datasets comprising a total of 1,713 subjects, representing one of the largest corpora for EEG-based AD detection to date, under a cross-validated, subject-independent setting. Experimental results demonstrate that ADformer consistently outperforms existing methods, achieving subject-level F1 scores of 92.82%, 89.83%, 67.99%, and 83.98% on the 4 datasets, respectively, in distinguishing AD from healthy control (HC) subjects.

Yihe Wang, Nan Huang, Taida Li et al.

Medical time series (MedTS) data, such as Electroencephalography (EEG) and Electrocardiography (ECG), play a crucial role in healthcare, such as diagnosing brain and heart diseases. Existing methods for MedTS classification primarily rely on handcrafted biomarkers extraction and CNN-based models, with limited exploration of transformer-based models. In this paper, we introduce Medformer, a multi-granularity patching transformer tailored specifically for MedTS classification. Our method incorporates three novel mechanisms to leverage the unique characteristics of MedTS: cross-channel patching to leverage inter-channel correlations, multi-granularity embedding for capturing features at different scales, and two-stage (intra- and inter-granularity) multi-granularity self-attention for learning features and correlations within and among granularities. We conduct extensive experiments on five public datasets under both subject-dependent and challenging subject-independent setups. Results demonstrate Medformer's superiority over 10 baselines, achieving top averaged ranking across five datasets on all six evaluation metrics. These findings underscore the significant impact of our method on healthcare applications, such as diagnosing Myocardial Infarction, Alzheimer's, and Parkinson's disease. We release the source code at https://github.com/DL4mHealth/Medformer.

Yihe Wang, Nan Huang, Nadia Mammone et al.

Electroencephalography (EEG) provides a non-invasive, highly accessible, and cost-effective approach for detecting Alzheimer's disease (AD). However, existing methods, whether based on handcrafted feature engineering or standard deep learning, face two major challenges: 1) the lack of large-scale EEG-AD datasets for robust representation learning, and 2) the absence of a dedicated deep learning pipeline for subject-level detection, which is more clinically meaningful than the commonly used sample-level detection. To address these gaps, we have curated the world's largest EEG-AD corpus to date, comprising 2,255 subjects. Leveraging this unique data corpus, we propose LEAD, the first large-scale foundation model for EEG analysis in dementia. Our approach provides an innovative framework for subject-level AD detection, including: 1) a comprehensive preprocessing pipeline such as artifact removal, resampling, and filtering, and a newly proposed multi-scale segmentation strategy, 2) a subject-regularized spatio-temporal transformer trained with a novel subject-level cross-entropy loss and an indices group-shuffling algorithm, and 3) AD-guided contrastive pre-training. We pre-train on 12 datasets (3 AD-related and 9 non-AD) and fine-tune/test on 4 AD datasets. Compared with 10 baselines, LEAD consistently obtains superior subject-level detection performance under the challenging subject-independent cross-validation protocol. On the benchmark ADFTD dataset, our model achieves an impressive subject-level Sensitivity of 90.91% under the leave-one-subject-out (LOSO) setting. These results strongly validate the effectiveness of our method for real-world EEG-based AD detection. Source code: https://github.com/DL4mHealth/LEAD

Zhenyue Zhao, Yihe Wang, Toby Stuart et al.

Large language models (LLMs) are known to generate plausible but false information across a wide range of contexts, yet the real-world magnitude and consequences of this hallucination problem remain poorly understood. Here we leverage a uniquely verifiable object - scientific citations - to audit 111 million references across 2.5 million papers in arXiv, bioRxiv, SSRN, and PubMed Central. We find a sharp rise in non-existent references following widespread LLM adoption, with a conservative estimate of 146,932 hallucinated citations in 2025 alone. These errors are diffusely embedded across many papers but especially pronounced in fields with rapid AI uptake, in manuscripts with linguistic signatures of AI-assisted writing, and among small and early-career author teams. At the same time, hallucinated references disproportionately assign credit to already prominent and male scholars, suggesting that LLM-generated errors may reinforce existing inequities in scientific recognition. Preprint moderation and journal publication processes capture only a fraction of these errors, suggesting that the spread of hallucinated content has outpaced existing safeguards. Together, these findings demonstrate that LLM hallucinations are infiltrating knowledge production at scale, threatening both the reliability and equity of future scientific discovery as human and AI systems draw on the existing literature.

Yihe Wang, Yitong Li, Yasheng Wang et al.

Real human conversation data are complicated, heterogeneous, and noisy, from which building open-domain dialogue systems remains a challenging task. In fact, such dialogue data still contains a wealth of information and knowledge, however, they are not fully explored. In this paper, we show existing open-domain dialogue generation methods that memorize context-response paired data with autoregressive or encode-decode language models underutilize the training data. Different from current approaches, using external knowledge, we explore a retrieval-generation training framework that can take advantage of the heterogeneous and noisy training data by considering them as "evidence". In particular, we use BERTScore for retrieval, which gives better qualities of the evidence and generation. Experiments over publicly available datasets demonstrate that our method can help models generate better responses, even such training data are usually impressed as low-quality data. Such performance gain is comparable with those improved by enlarging the training set, even better. We also found that the model performance has a positive correlation with the relevance of the retrieved evidence. Moreover, our method performed well on zero-shot experiments, which indicates that our method can be more robust to real-world data.