Seung Ah Lee

h-index27
2papers
2,654citations

2 Papers

13.8IVMar 14, 2023
Digital staining in optical microscopy using deep learning -- a review

Lucas Kreiss, Shaowei Jiang, Xiang Li et al. · pku

Until recently, conventional biochemical staining had the undisputed status as well-established benchmark for most biomedical problems related to clinical diagnostics, fundamental research and biotechnology. Despite this role as gold-standard, staining protocols face several challenges, such as a need for extensive, manual processing of samples, substantial time delays, altered tissue homeostasis, limited choice of contrast agents for a given sample, 2D imaging instead of 3D tomography and many more. Label-free optical technologies, on the other hand, do not rely on exogenous and artificial markers, by exploiting intrinsic optical contrast mechanisms, where the specificity is typically less obvious to the human observer. Over the past few years, digital staining has emerged as a promising concept to use modern deep learning for the translation from optical contrast to established biochemical contrast of actual stainings. In this review article, we provide an in-depth analysis of the current state-of-the-art in this field, suggest methods of good practice, identify pitfalls and challenges and postulate promising advances towards potential future implementations and applications.

5.0CVJul 6
Integrated Forward-Inverse Network for Lensless Image Reconstruction

Donggeon Bae, Jaewoo Jung, Yong Guk Kang et al.

Lensless imaging enables compact and versatile computational cameras by replacing bulky optics with thin coded elements. However, reconstruction from the resulting measurements is challenging: large-footprint point-spread functions (PSFs) produce highly multiplexed observations, making inversion severely ill-conditioned and sensitive to calibration errors and model mismatch. While deep learning approaches, including hybrid models that incorporate physics priors, have shown promise, explicitly maintaining data fidelity throughout the network hierarchy remains difficult. Here, we propose the Integrated Forward-Inverse Network (IFIN), a physics-guided architecture that interleaves differentiable forward projections with learnable inverse updates at every scale, enabling complementary cues to be exploited jointly in the measurement and image domains. This bidirectional coupling supports progressive, physics-consistent refinement and permits system-constrained PSF kernel adaptation under model uncertainty. On challenging lensless benchmarks, including a newly introduced dataset, IFIN achieves state-of-the-art reconstruction quality. We further observe competitive performance on Gaussian deblurring and simulated inline holography reconstruction, suggesting that the same interleaving principle can extend beyond lensless cameras.