Kate E. Jones

Peggy A. Bevan, Omiros Pantazis, Holly Pringle et al.

Large image collections generated from camera traps offer valuable insights into species richness, occupancy, and activity patterns, significantly aiding biodiversity monitoring. However, the manual processing of these datasets is time-consuming, hindering analytical processes. To address this, deep neural networks have been widely adopted to automate image labelling, but the impact of classification error on key ecological metrics remains unclear. Here, we analyse data from camera trap collections in an African savannah (82,300 labelled images, 47 species) and an Asian sub-tropical dry forest (40,308 labelled images, 29 species) to compare ecological metrics derived from expert-generated species identifications with those generated by deep learning classification models. We specifically assess the impact of deep learning model architecture, proportion of label noise in the training data, and the size of the training dataset on three key ecological metrics: species richness, occupancy, and activity patterns. We found that predictions of species richness derived from deep neural networks closely match those calculated from expert labels and remained resilient to up to 10% noise in the training dataset (mis-labelled images) and a 50% reduction in the training dataset size. We found that our choice of deep learning model architecture (ResNet vs ConvNext-T) or depth (ResNet18, 50, 101) did not impact predicted ecological metrics. In contrast, species-specific metrics were more sensitive; less common and visually similar species were disproportionately affected by a reduction in deep neural network accuracy, with consequences for occupancy and diel activity pattern estimates. To ensure the reliability of their findings, practitioners should prioritize creating large, clean training sets and account for class imbalance across species over exploring numerous deep learning model architectures.

Aude Vuilliomenet, Kate E. Jones, Duncan Wilson

1. Many ecological decisions are slowed by the gap between collecting and analysing biodiversity data. Edge computing moves processing closer to the sensor, with edge artificial intelligence (AI) enabling on-device inference, reducing reliance on data transfer and continuous connectivity. In principle, this shifts biodiversity monitoring from passive logging towards autonomous, responsive sensing systems. In practice, however, adoption remains fragmented, with key architectural trade-offs, performance constraints, and implementation challenges rarely reported systematically. 2. Here, we analyse 82 studies published between 2017 and 2025 that implement edge computing for biodiversity monitoring across acoustic, vision, tracking, and multi-modal systems. We synthesise hardware platforms, AI model optimisation, and wireless communication to critically assess how design choices shape ecological inference, deployment longevity, and operational feasibility. 3. Publications increased from 3 in 2017 to 19 in 2025. We identify four system types: (I) TinyML, low-power microcontrollers (MCUs) for single-taxon or rare-event detection; (II) Edge AI, single-board computers (SBCs) for multi-species classification and real-time alerts; (III) Distributed edge AI; and (IV) Cloud AI for retrospective processing pipelines. Each system type represents context-dependent trade-offs among power consumption, computational capability, and communication requirements. 4. Our analysis reveals the evolution of edge computing systems from proof-of-concept to robust, scalable tools. We argue that edge computing offers opportunities for responsive biodiversity management, but realising this potential requires increased collaboration between ecologists, engineers, and data scientists to align model development and system design with ecological questions, field constraints, and ethical considerations.

Aude Vuilliomenet, Santiago Martínez Balvanera, Oisin Mac Aodha et al.

1. Passive acoustic monitoring (PAM) coupled with artificial intelligence (AI) is becoming an essential tool for biodiversity monitoring. Traditional PAM systems require manual data offloading and impose substantial demands on storage and computing infrastructure. The combination of on-device AI-based processing and network connectivity enables local data analysis and transmission of only relevant information, greatly reducing storage needs. However, programming these devices for robust operation is challenging, requiring expertise in embedded systems and software engineering. Despite the increase in AI-based models for bioacoustics, their full potential remains unrealized without accessible tools to deploy them on custom hardware and tailor device behaviour to specific monitoring goals. 2. To address this challenge, we develop acoupi, an open-source Python framework that simplifies the creation and deployment of smart bioacoustic devices. acoupi integrates audio recording, AI-based data processing, data management, and real-time wireless messaging into a unified and configurable framework. By modularising key elements of the bioacoustic monitoring workflow, acoupi allows users to easily customise, extend, or select specific components to fit their unique monitoring needs. 3. We demonstrate the flexibility of acoupi by integrating two bioacoustic classifiers: BirdNET, for the classification of bird species, and BatDetect2, for the classification of UK bat species. We test the reliability of acoupi over a month-long deployment of two acoupi-powered devices in a UK urban park. 4. acoupi can be deployed on low-cost hardware such as the Raspberry Pi and can be customised for various applications. acoupi standardised framework and simplified tools facilitate the adoption of AI-powered PAM systems for researchers and conservationists. acoupi is on GitHub at https://github.com/acoupi/acoupi.

Edward Vendrow, Omiros Pantazis, Alexander Shepard et al. · mit

We introduce INQUIRE, a text-to-image retrieval benchmark designed to challenge multimodal vision-language models on expert-level queries. INQUIRE includes iNaturalist 2024 (iNat24), a new dataset of five million natural world images, along with 250 expert-level retrieval queries. These queries are paired with all relevant images comprehensively labeled within iNat24, comprising 33,000 total matches. Queries span categories such as species identification, context, behavior, and appearance, emphasizing tasks that require nuanced image understanding and domain expertise. Our benchmark evaluates two core retrieval tasks: (1) INQUIRE-Fullrank, a full dataset ranking task, and (2) INQUIRE-Rerank, a reranking task for refining top-100 retrievals. Detailed evaluation of a range of recent multimodal models demonstrates that INQUIRE poses a significant challenge, with the best models failing to achieve an mAP@50 above 50%. In addition, we show that reranking with more powerful multimodal models can enhance retrieval performance, yet there remains a significant margin for improvement. By focusing on scientifically-motivated ecological challenges, INQUIRE aims to bridge the gap between AI capabilities and the needs of real-world scientific inquiry, encouraging the development of retrieval systems that can assist with accelerating ecological and biodiversity research. Our dataset and code are available at https://inquire-benchmark.github.io

Ben Williams, Bart van Merriënboer, Vincent Dumoulin et al.

Machine learning has the potential to revolutionize passive acoustic monitoring (PAM) for ecological assessments. However, high annotation and compute costs limit the field's efficacy. Generalizable pretrained networks can overcome these costs, but high-quality pretraining requires vast annotated libraries, limiting its current applicability primarily to bird taxa. Here, we identify the optimum pretraining strategy for a data-deficient domain using coral reef bioacoustics. We assemble ReefSet, a large annotated library of reef sounds, though modest compared to bird libraries at 2% of the sample count. Through testing few-shot transfer learning performance, we observe that pretraining on bird audio provides notably superior generalizability compared to pretraining on ReefSet or unrelated audio alone. However, our key findings show that cross-domain mixing which leverages bird, reef and unrelated audio during pretraining maximizes reef generalizability. SurfPerch, our pretrained network, provides a strong foundation for automated analysis of marine PAM data with minimal annotation and compute costs.