Pierre Onghena

Matteo Bastico, Pierre Onghena, David Ryckelynck et al.

Accurate identification of anatomical landmarks is crucial for various medical applications. Traditional manual landmarking is time-consuming and prone to inter-observer variability, while rule-based methods are often tailored to specific geometries or limited sets of landmarks. In recent years, anatomical surfaces have been effectively represented as point clouds, which are lightweight structures composed of spatial coordinates. Following this strategy and to overcome the limitations of existing landmarking techniques, we propose Landmark Point Transformer (LmPT), a method for automatic anatomical landmark detection on point clouds that can leverage homologous bones from different species for translational research. The LmPT model incorporates a conditioning mechanism that enables adaptability to different input types to conduct cross-species learning. We focus the evaluation of our approach on femoral landmarking using both human and newly annotated dog femurs, demonstrating its generalization and effectiveness across species. The code and dog femur dataset will be publicly available at: https://github.com/Pierreoo/LandmarkPointTransformer.

Pierre Onghena, Santiago Velasco-Forero, Beatriz Marcotegui

Point clouds are a set of data points in space to represent the 3D geometry of objects. A fundamental step in the processing is to identify a subset of points to represent the shape. While traditional sampling methods often ignore to incorporate geometrical information, recent developments in learning-based sampling models have achieved significant levels of performance. With the integration of geometrical priors, the ability to learn and preserve the underlying structure can be enhanced when sampling. To shed light into the shape, a qualitative skeleton serves as an effective descriptor to guide sampling for both local and global geometries. In this paper, we introduce MorphoSkel3D as a new technique based on morphology to facilitate an efficient skeletonization of shapes. With its low computational cost, MorphoSkel3D is a unique, rule-based algorithm to benchmark its quality and performance on two large datasets, ModelNet and ShapeNet, under different sampling ratios. The results show that training with MorphoSkel3D leads to an informed and more accurate sampling in the practical application of object classification and point cloud retrieval.