Arash Rabbani

Arash Rabbani, Chenhao Sun, Masoud Babaei et al.

DeepAngle is a machine learning-based method to determine the contact angles of different phases in the tomography images of porous materials. Measurement of angles in 3--D needs to be done within the surface perpendicular to the angle planes, and it could become inaccurate when dealing with the discretized space of the image voxels. A computationally intensive solution is to correlate and vectorize all surfaces using an adaptable grid, and then measure the angles within the desired planes. On the contrary, the present study provides a rapid and low-cost technique powered by deep learning to estimate the interfacial angles directly from images. DeepAngle is tested on both synthetic and realistic images against the direct measurement technique and found to improve the r-squared by 5 to 16% while lowering the computational cost 20 times. This rapid method is especially applicable for processing large tomography data and time-resolved images, which is computationally intensive. The developed code and the dataset are available at an open repository on GitHub (https://www.github.com/ArashRabbani/DeepAngle).

Arash Rabbani, Hao Gao, Dirk Husmeier

In this study, we have tailored a pixel tracking method for temporal extrapolation of the ventricular segmentation masks in cardiac magnetic resonance images. The pixel tracking process starts from the end-diastolic frame of the heart cycle using the available manually segmented images to predict the end-systolic segmentation mask. The superpixels approach is used to divide the raw images into smaller cells and in each time frame, new labels are assigned to the image cells which leads to tracking the movement of the heart wall elements through different frames. The tracked masks at the end of systole are compared with the already available manually segmented masks and dice scores are found to be between 0.81 to 0.84. Considering the fact that the proposed method does not necessarily require a training dataset, it could be an attractive alternative approach to deep learning segmentation methods in scenarios where training data are limited.

Arash Rabbani, Masoud Babaei

In this study, a method has been developed to improve the resolution of histological human placenta images. For this purpose, a paired series of high- and low-resolution images have been collected to train a deep neural network model that can predict image residuals required to improve the resolution of the input images. A modified version of the U-net neural network model has been tailored to find the relationship between the low resolution and residual images. After training for 900 epochs on an augmented dataset of 1000 images, the relative mean squared error of 0.003 is achieved for the prediction of 320 test images. The proposed method has not only improved the contrast of the low-resolution images at the edges of cells but added critical details and textures that mimic high-resolution images of placenta villous space.

Arash Rabbani, Masoud Babaei, Masoumeh Gharib

In this study, a novel method of data augmentation has been presented for the segmentation of placental histological images when the labeled data are scarce. This method generates new realizations of the placenta intervillous morphology while maintaining the general textures and orientations. As a result, a diversified artificial dataset of images is generated that can be used for training deep learning segmentation models. We have observed that on average the presented method of data augmentation led to a 42% decrease in the binary cross-entropy loss of the validation dataset compared to the common approach in the literature. Additionally, the morphology of the intervillous space is studied under the effect of the proposed image reconstruction technique, and the diversity of the artificially generated population is quantified. Due to the high resemblance of the generated images to the real ones, the applications of the proposed method may not be limited to placental histological images, and it is recommended that other types of tissues be investigated in future studies.

Ali Sadeghkhani, Brandon Bennett, Masoud Babaei et al.

Digital reconstruction of porous materials has become increasingly critical for applications ranging from geological reservoir characterization to tissue engineering and electrochemical device design. While traditional methods such as micro-computed tomography and statistical reconstruction approaches have established foundations in this field, the emergence of deep learning techniques, particularly Generative Adversarial Networks (GANs), has revolutionized porous media reconstruction capabilities. This review systematically analyzes 96 peer-reviewed articles published from 2017 to early 2026, examining the evolution and applications of GAN-based approaches for porous material image reconstruction. We categorize GAN architectures into six distinct classes, namely Vanilla GANs, Multi-Scale GANs, Conditional GANs, Attention-Enhanced GANs, Style-based GANs, and Hybrid Architecture GANs. Our analysis reveals substantial progress including improvements in porosity accuracy (within 1% of original samples), permeability prediction (up to 79% reduction in mean relative errors), and achievable reconstruction volumes (from initial $64^3$ to current $2{,}200^3$ voxels). Despite these advances, persistent challenges remain in computational efficiency, memory constraints for large-scale reconstruction, and maintaining structural continuity in 2D-to-3D transformations. This systematic analysis provides a comprehensive framework for selecting appropriate GAN architectures based on specific application requirements.

Ali Sadeghkhani, Brandon Bennett, Masoud Babaei et al.

Obtaining truly representative pore-scale images that match bulk formation properties remains a fundamental challenge in subsurface characterization, as natural spatial heterogeneity causes extracted sub-images to deviate significantly from core-measured values. This challenge is compounded by data scarcity, where physical samples are only available at sparse well locations. This study presents a multi-conditional Generative Adversarial Network (cGAN) framework that generates representative pore-scale images with precisely controlled properties, addressing both the representativeness challenge and data availability constraints. The framework was trained on thin section samples from four depths (1879.50-1943.50 m) of a carbonate formation, simultaneously conditioning on porosity values and depth parameters within a single unified model. This approach captures both universal pore network principles and depth-specific geological characteristics, from grainstone fabrics with interparticle-intercrystalline porosity to crystalline textures with anhydrite inclusions. The model achieved exceptional porosity control (R^2=0.95) across all formations with mean absolute errors of 0.0099-0.0197. Morphological validation confirmed preservation of critical pore network characteristics including average pore radius, specific surface area, and tortuosity, with statistical differences remaining within acceptable geological tolerances. Most significantly, generated images demonstrated superior representativeness with dual-constraint errors of 1.9-11.3% compared to 36.4-578% for randomly extracted real sub-images. This capability provides transformative tools for subsurface characterization, particularly valuable for carbon storage, geothermal energy, and groundwater management applications where knowing the representative morphology of the pore space is critical for implementing digital rock physics.

Arash Rabbani, Masoud Babaei, Reza Shams et al.

DeePore is a deep learning workflow for rapid estimation of a wide range of porous material properties based on the binarized micro-tomography images. By combining naturally occurring porous textures we generated 17700 semi-real 3-D micro-structures of porous geo-materials with size of 256^3 voxels and 30 physical properties of each sample are calculated using physical simulations on the corresponding pore network models. Next, a designed feed-forward convolutional neural network (CNN) is trained based on the dataset to estimate several morphological, hydraulic, electrical, and mechanical characteristics of the porous material in a fraction of a second. In order to fine-tune the CNN design, we tested 9 different training scenarios and selected the one with the highest average coefficient of determination (R^2) equal to 0.885 for 1418 testing samples. Additionally, 3 independent synthetic images as well as 3 realistic tomography images have been tested using the proposed method and results are compared with pore network modelling and experimental data, respectively. Tested absolute permeabilities had around 13 % relative error compared to the experimental data which is noticeable considering the accuracy of the direct numerical simulation methods such as Lattice Boltzmann and Finite Volume. The workflow is compatible with any physical size of the images due to its dimensionless approach and can be used to characterize large-scale 3-D images by averaging the model outputs for a sliding window that scans the whole geometry.