Melanie Rey

Nan Rosemary Ke, Silvia Chiappa, Jane Wang et al. · deepmind, mila

The fundamental challenge in causal induction is to infer the underlying graph structure given observational and/or interventional data. Most existing causal induction algorithms operate by generating candidate graphs and evaluating them using either score-based methods (including continuous optimization) or independence tests. In our work, we instead treat the inference process as a black box and design a neural network architecture that learns the mapping from both observational and interventional data to graph structures via supervised training on synthetic graphs. The learned model generalizes to new synthetic graphs, is robust to train-test distribution shifts, and achieves state-of-the-art performance on naturalistic graphs for low sample complexity.

Nan Rosemary Ke, Sara-Jane Dunn, Jorg Bornschein et al. · deepmind, mila

Accurately inferring Gene Regulatory Networks (GRNs) is a critical and challenging task in biology. GRNs model the activatory and inhibitory interactions between genes and are inherently causal in nature. To accurately identify GRNs, perturbational data is required. However, most GRN discovery methods only operate on observational data. Recent advances in neural network-based causal discovery methods have significantly improved causal discovery, including handling interventional data, improvements in performance and scalability. However, applying state-of-the-art (SOTA) causal discovery methods in biology poses challenges, such as noisy data and a large number of samples. Thus, adapting the causal discovery methods is necessary to handle these challenges. In this paper, we introduce DiscoGen, a neural network-based GRN discovery method that can denoise gene expression measurements and handle interventional data. We demonstrate that our model outperforms SOTA neural network-based causal discovery methods.

Melanie Rey, Andriy Mnih, Maxim Neumann et al.

This paper investigates methods for estimating uncertainty in semantic segmentation predictions derived from satellite imagery. Estimating uncertainty for segmentation presents unique challenges compared to standard image classification, requiring scalable methods producing per-pixel estimates. While most research on this topic has focused on scene understanding or medical imaging, this work benchmarks existing methods specifically for remote sensing and Earth observation applications. Our evaluation focuses on the practical utility of uncertainty measures, testing their ability to identify prediction errors and noise-corrupted input image regions. Experiments are conducted on two remote sensing datasets, PASTIS and ForTy, selected for their differences in scale, geographic coverage, and label confidence. We perform an extensive evaluation featuring several models, such as Stochastic Segmentation Networks and ensembles, in combination with a number of neural architectures and uncertainty metrics. We make a number of practical recommendations based on our findings.

Melanie Rey, Volker Roth

We introduce a copula mixture model to perform dependency-seeking clustering when co-occurring samples from different data sources are available. The model takes advantage of the great flexibility offered by the copulas framework to extend mixtures of Canonical Correlation Analysis to multivariate data with arbitrary continuous marginal densities. We formulate our model as a non-parametric Bayesian mixture, while providing efficient MCMC inference. Experiments on synthetic and real data demonstrate that the increased flexibility of the copula mixture significantly improves the clustering and the interpretability of the results.