Spencer Fox

h-index14
2papers

2 Papers

LGJan 16, 2025
Physics-informed deep learning for infectious disease forecasting

Ying Qian, Kui Zhang, Éric Marty et al.

Accurate forecasting of contagious diseases is critical for public health policymaking and pandemic preparedness. We propose a new infectious disease forecasting model based on physics-informed neural networks (PINNs), an emerging scientific machine learning approach. By embedding a compartmental model into the loss function, our method integrates epidemiological theory with data, helping to prevent model overfitting. We further enhance the model with a sub-network that accounts for covariates such as mobility and cumulative vaccine doses, which influence the transmission rate. Using state-level COVID-19 data from California, we demonstrate that the PINN model accurately predicts cases, deaths, and hospitalizations, aligning well with existing benchmarks. Notably, the PINN model outperforms naive baseline forecasts and several sequence deep learning models, including Recurrent Neural Networks (RNNs), Long Short-Term Memory (LSTM) networks, Gated Recurrent Units (GRUs), and Transformers. It also achieves performance comparable to a sophisticated Gaussian infection state forecasting model that combines compartmental dynamics, a data observation model, and parameter regression. However, the PINN model features a simpler structure and is easier to implement. In summary, we systematically evaluate the PINN model's ability to forecast infectious disease dynamics, demonstrating its potential as an efficient computational tool to strengthen forecasting capabilities.

LGOct 20, 2020
Reinforcement Learning for Optimization of COVID-19 Mitigation policies

Varun Kompella, Roberto Capobianco, Stacy Jong et al.

The year 2020 has seen the COVID-19 virus lead to one of the worst global pandemics in history. As a result, governments around the world are faced with the challenge of protecting public health, while keeping the economy running to the greatest extent possible. Epidemiological models provide insight into the spread of these types of diseases and predict the effects of possible intervention policies. However, to date,the even the most data-driven intervention policies rely on heuristics. In this paper, we study how reinforcement learning (RL) can be used to optimize mitigation policies that minimize the economic impact without overwhelming the hospital capacity. Our main contributions are (1) a novel agent-based pandemic simulator which, unlike traditional models, is able to model fine-grained interactions among people at specific locations in a community; and (2) an RL-based methodology for optimizing fine-grained mitigation policies within this simulator. Our results validate both the overall simulator behavior and the learned policies under realistic conditions.