Fatemeh Valeh

h-index18
2papers

2 Papers

4.5LGMar 11
Single molecule localization microscopy challenge: a biologically inspired benchmark for long-sequence modeling

Fatemeh Valeh, Monika Farsang, Radu Grosu et al.

State space models (SSMs) have recently achieved strong performance on long sequence modeling tasks while offering improved memory and computational efficiency compared to transformer based architectures. However, their evaluation has been largely limited to synthetic benchmarks and application domains such as language and audio, leaving their behavior on sparse and stochastic temporal processes in biological imaging unexplored. In this work, we introduce the Single Molecule Localization Microscopy Challenge (SMLM-C), a benchmark dataset consisting of ten SMLM simulations spanning dSTORM and DNA-PAINT modalities with varying hyperparameter designed to evaluate state space models on biologically realistic spatiotemporal point process data with known ground truth. Using a controlled subset of these simulations, we evaluate state space models and find that performance degrades substantially as temporal discontinuity increases, revealing fundamental challenges in modeling heavy-tailed blinking dynamics. These results highlight the need for sequence models better suited to sparse, irregular temporal processes encountered in real world scientific imaging data.

CLOct 22, 2025Code
PBBQ: A Persian Bias Benchmark Dataset Curated with Human-AI Collaboration for Large Language Models

Farhan Farsi, Shayan Bali, Fatemeh Valeh et al.

With the increasing adoption of large language models (LLMs), ensuring their alignment with social norms has become a critical concern. While prior research has examined bias detection in various languages, there remains a significant gap in resources addressing social biases within Persian cultural contexts. In this work, we introduce PBBQ, a comprehensive benchmark dataset designed to evaluate social biases in Persian LLMs. Our benchmark, which encompasses 16 cultural categories, was developed through questionnaires completed by 250 diverse individuals across multiple demographics, in close collaboration with social science experts to ensure its validity. The resulting PBBQ dataset contains over 37,000 carefully curated questions, providing a foundation for the evaluation and mitigation of bias in Persian language models. We benchmark several open-source LLMs, a closed-source model, and Persian-specific fine-tuned models on PBBQ. Our findings reveal that current LLMs exhibit significant social biases across Persian culture. Additionally, by comparing model outputs to human responses, we observe that LLMs often replicate human bias patterns, highlighting the complex interplay between learned representations and cultural stereotypes.Upon acceptance of the paper, our PBBQ dataset will be publicly available for use in future work. Content warning: This paper contains unsafe content.