Mehmet Y. Turali

Shreyas Rajesh, Pavan Holur, Mehmet Yigit Turali et al.

Language models are increasingly used to reason over content they were not trained on, such as new documents, evolving knowledge, and user-specific data. A common approach is retrieval-augmented generation (RAG), which stores verbatim documents externally (as chunks) and retrieves only a relevant subset at inference time for an LLM to reason over. However, this results in inefficient usage of test-time compute (LLM repeatedly reasons over the same documents); moreover, chunk retrieval can inject irrelevant context that increases unsupported generation. We propose a human-like non-parametric continual learning framework, where the base model remains fixed, and learning occurs by integrating each new experience into an external semantic memory state that accumulates and consolidates itself continually. We present Panini, which realizes this by representing documents as Generative Semantic Workspaces (GSW) -- an entity- and event-aware network of question-answer (QA) pairs, sufficient for an LLM to reconstruct the experienced situations and mine latent knowledge via reasoning-grounded inference chains on the network. Given a query, Panini only traverses the continually-updated GSW (not the verbatim documents or chunks), and retrieves the most likely inference chains. Across six QA benchmarks, Panini achieves the highest average performance, 5%-7% higher than other competitive baselines, while using 2-30x fewer answer-context tokens, supports fully open-source pipelines, and reduces unsupported answers on curated unanswerable queries. The results show that efficient and accurate structuring of experiences at write time -- as achieved by the GSW framework -- yields both efficiency and reliability gains at read time. Code is available at https://github.com/roychowdhuryresearch/gsw-memory.

Şaban Öztürk, M. Yiğit Turalı, Tolga Çukur

Chest X-ray is an essential diagnostic tool in the identification of chest diseases given its high sensitivity to pathological abnormalities in the lungs. However, image-driven diagnosis is still challenging due to heterogeneity in size and location of pathology, as well as visual similarities and co-occurrence of separate pathology. Since disease-related regions often occupy a relatively small portion of diagnostic images, classification models based on traditional convolutional neural networks (CNNs) are adversely affected given their locality bias. While CNNs were previously augmented with attention maps or spatial masks to guide focus on potentially critical regions, learning localization guidance under heterogeneity in the spatial distribution of pathology is challenging. To improve multi-label classification performance, here we propose a novel method, HydraViT, that synergistically combines a transformer backbone with a multi-branch output module with learned weighting. The transformer backbone enhances sensitivity to long-range context in X-ray images, while using the self-attention mechanism to adaptively focus on task-critical regions. The multi-branch output module dedicates an independent branch to each disease label to attain robust learning across separate disease classes, along with an aggregated branch across labels to maintain sensitivity to co-occurrence relationships among pathology. Experiments demonstrate that, on average, HydraViT outperforms competing attention-guided methods by 1.2%, region-guided methods by 1.4%, and semantic-guided methods by 1.0% in multi-label classification performance.

Mehmet E. Lorasdagi, Mehmet Y. Turali, Suleyman S. Kozat

We investigate feature selection problem for generic machine learning models. We introduce a novel framework that selects features considering the outcomes of the model. Our framework introduces a novel feature masking approach to eliminate the features during the selection process, instead of completely removing them from the dataset. This allows us to use the same machine learning model during feature selection, unlike other feature selection methods where we need to train the machine learning model again as the dataset has different dimensions on each iteration. We obtain the mask operator using the predictions of the machine learning model, which offers a comprehensive view on the subsets of the features essential for the predictive performance of the model. A variety of approaches exist in the feature selection literature. However, to our knowledge, no study has introduced a training-free framework for a generic machine learning model to select features while considering the importance of the feature subsets as a whole, instead of focusing on the individual features. We demonstrate significant performance improvements on the real-life datasets under different settings using LightGBM and Multi-Layer Perceptron as our machine learning models. The high performance of our General Binary Mask Optimization algorithm stems from its feature masking approach to select features and its flexibility in the number of selected features. The algorithm selects features based on the validation performance of the machine learning model. Hence, the number of selected features is not predetermined and adjusts dynamically to the dataset. Additionally, we openly share the implementation or our code to encourage further research in this area.

Mehmet Y. Turali, Mehmet E. Lorasdagi, Ali T. Koc et al.

We study the problem of feature selection in general machine learning (ML) context, which is one of the most critical subjects in the field. Although, there exist many feature selection methods, however, these methods face challenges such as scalability, managing high-dimensional data, dealing with correlated features, adapting to variable feature importance, and integrating domain knowledge. To this end, we introduce the "Adaptive Feature Selection with Binary Masking" (AFS-BM) which remedies these problems. AFS-BM achieves this by joint optimization for simultaneous feature selection and model training. In particular, we do the joint optimization and binary masking to continuously adapt the set of features and model parameters during the training process. This approach leads to significant improvements in model accuracy and a reduction in computational requirements. We provide an extensive set of experiments where we compare AFS-BM with the established feature selection methods using well-known datasets from real-life competitions. Our results show that AFS-BM makes significant improvement in terms of accuracy and requires significantly less computational complexity. This is due to AFS-BM's ability to dynamically adjust to the changing importance of features during the training process, which an important contribution to the field. We openly share our code for the replicability of our results and to facilitate further research.

Shreyas Rajesh, Kartik Sharma, Tonmoy Monsoor et al.

Specialist epilepsy expertise is scarce in resource-constrained settings, making LLM-based decision support attractive for frontline clinicians managing longitudinal treatment. Such systems must adapt to local prescribing practice and know when to defer. We study this problem in Ugandan pediatric epilepsy care, predicting anti-seizure medication regimens from longitudinal unstructured clinic notes. Standard prompting achieves non-trivial agreement with physician prescriptions, but neurologist review shows that many errors reflect distribution-miscalibrated prescribing defaults rather than failures to parse the local record. We introduce MANANA, a non-parametric prompt-learning framework that learns local prescribing guidance from a small patient-level training set. MANANA converts observed prescription errors into auditable prompt memories, instantiated in single-agent and multi-agent variants, and improves over classical ML models, direct LLM prompting, and prompt-optimization baselines across two independently collected Ugandan cohorts. We further propose Bayesian prompt averaging, which converts the learned prompt trajectory into prescription likelihoods and an uncertainty-based deferral signal. On the independently collected held-out cohort, this improves visit-level top-3 prescription accuracy by 4-8 percentage points over prompt-optimization baselines and enables selective prediction: the system can auto-handle the most confident half of cases at 95% precision, or the most confident quarter at 99% precision, while deferring lower-confidence cases for specialist review.