Mothilal Asokan

Mothilal Asokan, Joseph Geo Benjamin, Mohammad Yaqub et al.

Adapting foundation models for medical image analysis requires finetuning them on a considerable amount of data because of extreme distribution shifts between natural (source) data used for pretraining and medical (target) data. However, collecting task-specific medical data for such finetuning at a central location raises many privacy concerns. Although Federated learning (FL) provides an effective means for training on private decentralized data, communication costs in federating large foundation models can quickly become a significant bottleneck, impacting the solution's scalability. In this work, we address this problem of efficient communication while ensuring effective learning in FL by combining the strengths of Parameter-Efficient Fine-tuning (PEFT) with FL. Specifically, we study plug-and-play Low-Rank Adapters (LoRA) in a federated manner to adapt the Segment Anything Model (SAM) for 3D medical image segmentation. Unlike prior works that utilize LoRA and finetune the entire decoder, we critically analyze the contribution of each granular component of SAM on finetuning performance. Thus, we identify specific layers to be federated that are very efficient in terms of communication cost while producing on-par accuracy. Our experiments show that retaining the parameters of the SAM model (including most of the decoder) in their original state during adaptation is beneficial because fine-tuning on small datasets tends to distort the inherent capabilities of the underlying foundation model. On Fed-KiTS, our approach decreases communication cost (~48x) compared to full fine-tuning while increasing performance (~6% Dice score) in 3D segmentation tasks. Our approach performs similar to SAMed while achieving ~2.8x reduction in communication and parameters to be finetuned. We further validate our approach with experiments on Fed-IXI and Prostate MRI datasets.

Joseph Geo Benjamin, Mothilal Asokan, Amna Alhosani et al.

Self-supervised learning (SSL) methods are popular since they can address situations with limited annotated data by directly utilising the underlying data distribution. However, the adoption of such methods is not explored enough in ultrasound (US) imaging, especially for fetal assessment. We investigate the potential of dual-encoder SSL in utilizing unlabelled US video data to improve the performance of challenging downstream Standard Fetal Cardiac Planes (SFCP) classification using limited labelled 2D US images. We study 7 SSL approaches based on reconstruction, contrastive loss, distillation, and information theory and evaluate them extensively on a large private US dataset. Our observations and findings are consolidated from more than 500 downstream training experiments under different settings. Our primary observation shows that for SSL training, the variance of the dataset is more crucial than its size because it allows the model to learn generalisable representations, which improve the performance of downstream tasks. Overall, the BarlowTwins method shows robust performance, irrespective of the training settings and data variations, when used as an initialisation for downstream tasks. Notably, full fine-tuning with 1% of labelled data outperforms ImageNet initialisation by 12% in F1-score and outperforms other SSL initialisations by at least 4% in F1-score, thus making it a promising candidate for transfer learning from US video to image data.

Joseph Geo Benjamin, Mothilal Asokan, Mohammad Yaqub et al.

One of the most common defense strategies against Byzantine clients in federated learning (FL) is to employ a robust aggregator mechanism that makes the training more resilient. While many existing Byzantine robust aggregators provide theoretical convergence guarantees and are empirically effective against certain categories of attacks, we observe that certain high-strength attacks can subvert the robust aggregator and collapse the training. To overcome this limitation, we propose a method called FedSECA for robust Sign Election and Coordinate-wise Aggregation of gradients in FL that is less susceptible to malicious updates by an omniscient attacker. The proposed method has two main components. The Concordance Ratio Induced Sign Election(CRISE) module determines the consensus direction (elected sign) for each individual parameter gradient through a weighted voting strategy. The client weights are assigned based on a novel metric called concordance ratio, which quantifies the degree of sign agreement between the client gradient updates. Based on the elected sign, a Robust Coordinate-wise Aggregation(RoCA) strategy is employed, where variance-reduced sparse gradients are aggregated only if they are in alignment with the corresponding elected sign. We compare our proposed FedSECA method against 10 robust aggregators under 7 Byzantine attacks on 3 datasets and architectures. The results show that existing robust aggregators fail for at least some attacks, while FedSECA exhibits better robustness. Code - https://github.com/JosephGeoBenjamin/FedSECA-ByzantineTolerance