Zanoni Dias

Gabriel Bianchin de Oliveira, Helio Pedrini, Zanoni Dias

Various approaches utilizing Transformer architectures have achieved state-of-the-art results in Natural Language Processing (NLP). Based on this success, numerous architectures have been proposed for other types of data, such as in biology, particularly for protein sequences. Notably among these are the ESM2 architectures, pre-trained on billions of proteins, which form the basis of various state-of-the-art approaches in the field. However, the ESM2 architectures have a limitation regarding input size, restricting it to 1,022 amino acids, which necessitates the use of preprocessing techniques to handle sequences longer than this limit. In this paper, we present the long and quantized versions of the ESM2 architectures, doubling the input size limit to 2,048 amino acids.

Lucas David, Helio Pedrini, Zanoni Dias

Weakly Supervised Semantic Segmentation (WSSS) techniques explore individual regularization strategies to refine Class Activation Maps (CAMs). In this work, we first analyze complementary WSSS techniques in the literature, their segmentation properties, and the conditions in which they are most effective. Based on these findings, we devise two new techniques: P-NOC and CCAM-H. In the first, we promote the conjoint training of two adversarial CAM generating networks: the generator, which progressively learns to erase regions containing class-specific features, and a discriminator, which is refined to gradually shift its attention to new class discriminant features. In the latter, we employ the high quality pseudo-segmentation priors produced by P-NOC to guide the learning to saliency information in a weakly supervised fashion. Finally, we employ both pseudo-segmentation priors and pseudo-saliency proposals in the random walk procedure, resulting in higher quality pseudo-semantic segmentation masks, and competitive results with the state of the art.