Zhijie Wen

Hao Zhang, Qi Wang, Jun Shi et al.

Multi-modal Magnetic Resonance Imaging (MRI) offers complementary diagnostic information, but some modalities are limited by the long scanning time. To accelerate the whole acquisition process, MRI reconstruction of one modality from highly undersampled k-space data with another fully-sampled reference modality is an efficient solution. However, the misalignment between modalities, which is common in clinic practice, can negatively affect reconstruction quality. Existing deep learning-based methods that account for inter-modality misalignment perform better, but still share two main common limitations: (1) The spatial alignment task is not adaptively integrated with the reconstruction process, resulting in insufficient complementarity between the two tasks; (2) the entire framework has weak interpretability. In this paper, we construct a novel Deep Unfolding Network with Spatial Alignment, termed DUN-SA, to appropriately embed the spatial alignment task into the reconstruction process. Concretely, we derive a novel joint alignment-reconstruction model with a specially designed cross-modal spatial alignment term. By relaxing the model into cross-modal spatial alignment and multi-modal reconstruction tasks, we propose an effective algorithm to solve this model alternatively. Then, we unfold the iterative steps of the proposed algorithm and design corresponding network modules to build DUN-SA with interpretability. Through end-to-end training, we effectively compensate for spatial misalignment using only reconstruction loss, and utilize the progressively aligned reference modality to provide inter-modality prior to improve the reconstruction of the target modality. Comprehensive experiments on three real datasets demonstrate that our method exhibits superior reconstruction performance compared to state-of-the-art methods.

Yuandi Zhao, Qianxi Xia, Yang Sun et al.

In recent years, the remarkable success of deep neural networks (DNNs) in computer vision is largely due to large-scale, high-quality labeled datasets. Training directly on real-world datasets with label noise may result in overfitting. The traditional method is limited to deal with closed set label noise, where noisy training data has true class labels within the known label space. However, there are some real-world datasets containing open set label noise, which means that some samples belong to an unknown class outside the known label space. To address the open set label noise problem, we introduce a method based on Robust Sample Selection and Margin-Guided Module (RSS-MGM). Firstly, unlike the prior clean sample selection approach, which only select a limited number of clean samples, a robust sample selection module combines small loss selection or high-confidence sample selection to obtain more clean samples. Secondly, to efficiently distinguish open set label noise and closed set ones, margin functions are designed to filter open-set data and closed set data. Thirdly, different processing methods are selected for different types of samples in order to fully utilize the data's prior information and optimize the whole model. Furthermore, extensive experimental results with noisy labeled data from benchmark datasets and real-world datasets, such as CIFAR-100N-C, CIFAR80N-O, WebFG-469, and Food101N, indicate that our approach outperforms many state-of-the-art label noise learning methods. Especially, it can more accurately divide open set label noise samples and closed set ones.

Hao Zhang, Qi Wang, Jian Sun et al.

Magnetic Resonance Imaging (MRI) is widely used in clinical practice, but suffered from prolonged acquisition time. Although deep learning methods have been proposed to accelerate acquisition and demonstrate promising performance, they rely on high-quality fully-sampled datasets for training in a supervised manner. However, such datasets are time-consuming and expensive-to-collect, which constrains their broader applications. On the other hand, self-supervised methods offer an alternative by enabling learning from under-sampled data alone, but most existing methods rely on further partitioned under-sampled k-space data as model's input for training, resulting in a loss of valuable information. Additionally, their models have not fully incorporated image priors, leading to degraded reconstruction performance. In this paper, we propose a novel re-visible dual-domain self-supervised deep unfolding network to address these issues when only under-sampled datasets are available. Specifically, by incorporating re-visible dual-domain loss, all under-sampled k-space data are utilized during training to mitigate information loss caused by further partitioning. This design enables the model to implicitly adapt to all under-sampled k-space data as input. Additionally, we design a deep unfolding network based on Chambolle and Pock Proximal Point Algorithm (DUN-CP-PPA) to achieve end-to-end reconstruction, incorporating imaging physics and image priors to guide the reconstruction process. By employing a Spatial-Frequency Feature Extraction (SFFE) block to capture global and local feature representation, we enhance the model's efficiency to learn comprehensive image priors. Experiments conducted on the fastMRI and IXI datasets demonstrate that our method significantly outperforms state-of-the-art approaches in terms of reconstruction performance.

Qi Wang, Zhijie Wen, Jun Shi et al.

Multi-modal magnetic resonance imaging (MRI) plays a crucial role in comprehensive disease diagnosis in clinical medicine. However, acquiring certain modalities, such as T2-weighted images (T2WIs), is time-consuming and prone to be with motion artifacts. It negatively impacts subsequent multi-modal image analysis. To address this issue, we propose an end-to-end deep learning framework that utilizes T1-weighted images (T1WIs) as auxiliary modalities to expedite T2WIs' acquisitions. While image pre-processing is capable of mitigating misalignment, improper parameter selection leads to adverse pre-processing effects, requiring iterative experimentation and adjustment. To overcome this shortage, we employ Optimal Transport (OT) to synthesize T2WIs by aligning T1WIs and performing cross-modal synthesis, effectively mitigating spatial misalignment effects. Furthermore, we adopt an alternating iteration framework between the reconstruction task and the cross-modal synthesis task to optimize the final results. Then, we prove that the reconstructed T2WIs and the synthetic T2WIs become closer on the T2 image manifold with iterations increasing, and further illustrate that the improved reconstruction result enhances the synthesis process, whereas the enhanced synthesis result improves the reconstruction process. Finally, experimental results from FastMRI and internal datasets confirm the effectiveness of our method, demonstrating significant improvements in image reconstruction quality even at low sampling rates.

Li Tian, Liyan Ma, Zhijie Wen et al.

Diabetic retinopathy (DR) is one of the leading causes of blindness. However, no specific symptoms of early DR lead to a delayed diagnosis, which results in disease progression in patients. To determine the disease severity levels, ophthalmologists need to focus on the discriminative parts of the fundus images. In recent years, deep learning has achieved great success in medical image analysis. However, most works directly employ algorithms based on convolutional neural networks (CNNs), which ignore the fact that the difference among classes is subtle and gradual. Hence, we consider automatic image grading of DR as a fine-grained classification task, and construct a bilinear model to identify the pathologically discriminative areas. In order to leverage the ordinal information among classes, we use an ordinal regression method to obtain the soft labels. In addition, other than only using a categorical loss to train our network, we also introduce the metric loss to learn a more discriminative feature space. Experimental results demonstrate the superior performance of the proposed method on two public IDRiD and DeepDR datasets.