Chengrui Wang

Yuhang Zhang, Chengrui Wang, Xu Ling et al.

Noisy label Facial Expression Recognition (FER) is more challenging than traditional noisy label classification tasks due to the inter-class similarity and the annotation ambiguity. Recent works mainly tackle this problem by filtering out large-loss samples. In this paper, we explore dealing with noisy labels from a new feature-learning perspective. We find that FER models remember noisy samples by focusing on a part of the features that can be considered related to the noisy labels instead of learning from the whole features that lead to the latent truth. Inspired by that, we propose a novel Erasing Attention Consistency (EAC) method to suppress the noisy samples during the training process automatically. Specifically, we first utilize the flip semantic consistency of facial images to design an imbalanced framework. We then randomly erase input images and use flip attention consistency to prevent the model from focusing on a part of the features. EAC significantly outperforms state-of-the-art noisy label FER methods and generalizes well to other tasks with a large number of classes like CIFAR100 and Tiny-ImageNet. The code is available at https://github.com/zyh-uaiaaaa/Erasing-Attention-Consistency.

Chengrui Wang, Qingqing Long, Meng Xiao et al.

The question-answering system for Life science research, which is characterized by the rapid pace of discovery, evolving insights, and complex interactions among knowledge entities, presents unique challenges in maintaining a comprehensive knowledge warehouse and accurate information retrieval. To address these issues, we introduce BioRAG, a novel Retrieval-Augmented Generation (RAG) with the Large Language Models (LLMs) framework. Our approach starts with parsing, indexing, and segmenting an extensive collection of 22 million scientific papers as the basic knowledge, followed by training a specialized embedding model tailored to this domain. Additionally, we enhance the vector retrieval process by incorporating a domain-specific knowledge hierarchy, which aids in modeling the intricate interrelationships among each query and context. For queries requiring the most current information, BioRAG deconstructs the question and employs an iterative retrieval process incorporated with the search engine for step-by-step reasoning. Rigorous experiments have demonstrated that our model outperforms fine-tuned LLM, LLM with search engines, and other scientific RAG frameworks across multiple life science question-answering tasks.

Chunhui Li, Chengrui Wang, Zhiqiang Yuan et al.

Comprehensive evaluation of the functionalities, algorithms, hardware components, and performance characteristics of future integrated sensing and communication (ISAC) base stations (BSs) under realistic deployment scenarios in controlled laboratory environments represents a critical requirement for ISAC technology advancement. A primary challenge in achieving this objective involves the emulation of multiple targets with arbitrary radar cross-section (RCS), range, angle, and Doppler profiles for ISAC BS equipped with large-scale antenna arrays using radar target simulator (RTS) with limited interface ports. In this work, we introduce a simple yet highly effective and practical conductive amplitude and phase matrix framework to address this fundamental challenge. The core concept involves introducing a tunable conductive amplitude and phase modulation network in the test configuration between the ISAC BS under test and a RTS. Based on this structure, we subsequently investigate the corresponding configurations for different sensing operational modes of ISAC BSs, specifically the array duplex transmission and reception (ADTR) mode and the split-array transmission and reception (SATR) mode. For experimental validation, we design two distinct monostatic sensing scenarios to demonstrate the framework capabilities across both operational modes. The first scenario involves dynamic multi-drone sensing validation for ADTR mode operation, while the second scenario addresses static single-drone sensing for SATR mode validation. The experimental results demonstrate that the proposed framework can accurately emulate the joint RCS, range, velocity, and angular characteristics of multiple sensing targets within the conductive test environment, highlighting its significant potential for testing applications in sub-6 GHz ISAC BS development and validation.

Chuan Qin, Xin Chen, Chengrui Wang et al.

In recent years, the rapid advancement of Artificial Intelligence (AI) technologies, particularly Large Language Models (LLMs), has revolutionized the paradigm of scientific discovery, establishing AI-for-Science (AI4Science) as a dynamic and evolving field. However, there is still a lack of an effective framework for the overall assessment of AI4Science, particularly from a holistic perspective on data quality and model capability. Therefore, in this study, we propose SciHorizon, a comprehensive assessment framework designed to benchmark the readiness of AI4Science from both scientific data and LLM perspectives. First, we introduce a generalizable framework for assessing AI-ready scientific data, encompassing four key dimensions: Quality, FAIRness, Explainability, and Compliance-which are subdivided into 15 sub-dimensions. Drawing on data resource papers published between 2018 and 2023 in peer-reviewed journals, we present recommendation lists of AI-ready datasets for Earth, Life, and Materials Sciences, making a novel and original contribution to the field. Concurrently, to assess the capabilities of LLMs across multiple scientific disciplines, we establish 16 assessment dimensions based on five core indicators Knowledge, Understanding, Reasoning, Multimodality, and Values spanning Mathematics, Physics, Chemistry, Life Sciences, and Earth and Space Sciences. Using the developed benchmark datasets, we have conducted a comprehensive evaluation of over 50 representative open-source and closed source LLMs. All the results are publicly available and can be accessed online at www.scihorizon.cn/en.

Xunxin Cai, Chengrui Wang, Qingqing Long et al.

The rapid advancement of large language models (LLMs) in biological-medical applications has highlighted a gap between their potential and the limited scale and often low quality of available open-source annotated textual datasets. In addition, the inherent complexity of the biomedical knowledge hierarchy significantly hampers efforts to bridge this gap.Can LLMs themselves play a pivotal role in overcoming this limitation? Motivated by this question, we investigate this challenge in the present study.We propose a framework that automates the distillation of high-quality textual training data from the extensive scientific literature. Our approach self-evaluates and generates questions that are more closely aligned with the biomedical domain, guided by the biomedical knowledge hierarchy through medical subject headings (MeSH). This comprehensive framework establishes an automated workflow, thereby eliminating the need for manual intervention. Furthermore, we conducted comprehensive experiments to evaluate the impact of our framework-generated data on downstream language models of varying sizes. Our approach substantially improves question-answering tasks compared to pre-trained models from the life sciences domain and powerful close-source models represented by GPT-4. Notably, the generated AI-Ready dataset enabled the Llama3-70B base model to outperform GPT-4 using MedPrompt with multiple times the number of parameters. Detailed case studies and ablation experiments underscore the significance of each component within our framework

Joseph Bejjani, Chase Van Amburg, Chengrui Wang et al.

We explore how physical scale and population size shape the emergence of complex behaviors in open-ended ecological environments. In our setting, agents are unsupervised and have no explicit rewards or learning objectives but instead evolve over time according to reproduction, mutation, and natural selection. As they act, agents also shape their environment and the population around them in an ongoing dynamic ecology. Our goal is not to optimize a single high-performance policy, but instead to examine how behaviors emerge and evolve across large populations due to natural competition and environmental pressures. In an effort to discover how complex behaviors naturally emerge, we conduct experiments in large-scale worlds that reach populations of more than 60,000 individual agents, each with their own evolved neural network policy. We identify various emergent behaviors such as long-range resource extraction, vision-based foraging, and predation that arise under competitive and survival pressures. We examine how sensing modalities and environmental scale affect the emergence of these behaviors, finding that some appear only in sufficiently large environments and populations, with larger scales increasing behavioral stability and consistency. While there is a rich history of research in evolutionary settings, our scaling results provide promising new directions to explore ecology as an instrument of machine learning in an era of abundant computational resources. Experimental code is available at https://github.com/jbejjani2022/ecological-emergent-behavior.

Meng Xiao, Xunxin Cai, Qingqing Long et al.

Corpus distillation for biomedical large language models (LLMs) seeks to address the pressing challenge of insufficient quantity and quality in open-source annotated scientific corpora, which remains a bottleneck for effective LLM training in biomedical research. This paper proposes a knowledge-driven, agentic framework for scientific corpus distillation, tailored explicitly for LLM training in the biomedical domain, addressing the challenge posed by the complex hierarchy of biomedical knowledge. Central to our approach is a collaborative multi-agent architecture, where specialized agents, each guided by the Medical Subject Headings (MeSH) hierarchy, work in concert to autonomously extract, synthesize, and self-evaluate high-quality textual data from vast scientific literature. This agentic framework collectively generates and refines domain-specific question-answer pairs, ensuring comprehensive coverage and consistency with biomedical ontologies while minimizing manual involvement. Extensive experimental results show that language models trained on our multi-agent distilled datasets achieve notable improvements in biomedical question-answering tasks, outperforming both strong life sciences LLM baselines and advanced proprietary models. Notably, our AI-Ready dataset enables Llama3-70B to surpass GPT-4 with MedPrompt and Med-PaLM-2, despite their larger scale. Detailed ablation studies and case analyses further validate the effectiveness and synergy of each agent within the framework, highlighting the potential of multi-agent collaboration in biomedical LLM training.

Chengrui Wang, Pengfei Liu, Min Zhou et al.

Although diffusion models can generate high-quality human images, their applications are limited by the instability in generating hands with correct structures. In this paper, we introduce RHanDS, a conditional diffusion-based framework designed to refine malformed hands by utilizing decoupled structure and style guidance. The hand mesh reconstructed from the malformed hand offers structure guidance for correcting the structure of the hand, while the malformed hand itself provides style guidance for preserving the style of the hand. To alleviate the mutual interference between style and structure guidance, we introduce a two-stage training strategy and build a series of multi-style hand datasets. In the first stage, we use paired hand images for training to ensure stylistic consistency in hand refining. In the second stage, various hand images generated based on human meshes are used for training, enabling the model to gain control over the hand structure. Experimental results demonstrate that RHanDS can effectively refine hand structure while preserving consistency in hand style.

Haotian Chen, Qingqing Long, Meng Xiao et al.

Scientific literature question answering is a pivotal step towards new scientific discoveries. Recently, \textit{two-stage} retrieval-augmented generated large language models (RAG-LLMs) have shown impressive advancements in this domain. Such a two-stage framework, especially the second stage (reranker), is particularly essential in the scientific domain, where subtle differences in terminology may have a greatly negative impact on the final factual-oriented or knowledge-intensive answers. Despite this significant progress, the potential and limitations of these works remain unexplored. In this work, we present a Scientific Rerank-oriented RAG Benchmark (SciRerankBench), for evaluating rerankers within RAG-LLMs systems, spanning five scientific subjects. To rigorously assess the reranker performance in terms of noise resilience, relevance disambiguation, and factual consistency, we develop three types of question-context-answer (Q-C-A) pairs, i.e., Noisy Contexts (NC), Semantically Similar but Logically Irrelevant Contexts (SSLI), and Counterfactual Contexts (CC). Through systematic evaluation of 13 widely used rerankers on five families of LLMs, we provide detailed insights into their relative strengths and limitations. To the best of our knowledge, SciRerankBench is the first benchmark specifically developed to evaluate rerankers within RAG-LLMs, which provides valuable observations and guidance for their future development.

Wentao Cui, Shoubo Li, Chen Fang et al.

Discovering gene-disease associations is crucial for understanding disease mechanisms, yet identifying these associations remains challenging due to the time and cost of biological experiments. Computational methods are increasingly vital for efficient and scalable gene-disease association prediction. Graph-based learning models, which leverage node features and network relationships, are commonly employed for biomolecular predictions. However, existing methods often struggle to effectively integrate node features, heterogeneous structures, and semantic information. To address these challenges, we propose COmprehensive MEtapath-based heterogeneous graph Transformer(COMET) for predicting gene-disease associations. COMET integrates diverse datasets to construct comprehensive heterogeneous networks, initializing node features with BioGPT. We define seven Metapaths and utilize a transformer framework to aggregate Metapath instances, capturing global contexts and long-distance dependencies. Through intra- and inter-metapath aggregation using attention mechanisms, COMET fuses latent vectors from multiple Metapaths to enhance GDA prediction accuracy. Our method demonstrates superior robustness compared to state-of-the-art approaches. Ablation studies and visualizations validate COMET's effectiveness, providing valuable insights for advancing human health research.

Chengrui Wang, Han Fang, Yaoyao Zhong et al.

As more and more people begin to wear masks due to current COVID-19 pandemic, existing face recognition systems may encounter severe performance degradation when recognizing masked faces. To figure out the impact of masks on face recognition model, we build a simple but effective tool to generate masked faces from unmasked faces automatically, and construct a new database called Masked LFW (MLFW) based on Cross-Age LFW (CALFW) database. The mask on the masked face generated by our method has good visual consistency with the original face. Moreover, we collect various mask templates, covering most of the common styles appeared in the daily life, to achieve diverse generation effects. Considering realistic scenarios, we design three kinds of combinations of face pairs. The recognition accuracy of SOTA models declines 5%-16% on MLFW database compared with the accuracy on the original images. MLFW database can be viewed and downloaded at \url{http://whdeng.cn/mlfw}.

Chengrui Wang, Weihong Deng

Although vanilla Convolutional Neural Network (CNN) based detectors can achieve satisfactory performance on fake face detection, we observe that the detectors tend to seek forgeries on a limited region of face, which reveals that the detectors is short of understanding of forgery. Therefore, we propose an attention-based data augmentation framework to guide detector refine and enlarge its attention. Specifically, our method tracks and occludes the Top-N sensitive facial regions, encouraging the detector to mine deeper into the regions ignored before for more representative forgery. Especially, our method is simple-to-use and can be easily integrated with various CNN models. Extensive experiments show that the detector trained with our method is capable to separately point out the representative forgery of fake faces generated by different manipulation techniques, and our method enables a vanilla CNN-based detector to achieve state-of-the-art performance without structure modification.