Graph Pooling for Graph Neural Networks: Progress, Challenges, and OpportunitiesChuang Liu, Yibing Zhan, Jia Wu et al.
Graph neural networks have emerged as a leading architecture for many graph-level tasks, such as graph classification and graph generation. As an essential component of the architecture, graph pooling is indispensable for obtaining a holistic graph-level representation of the whole graph. Although a great variety of methods have been proposed in this promising and fast-developing research field, to the best of our knowledge, little effort has been made to systematically summarize these works. To set the stage for the development of future works, in this paper, we attempt to fill this gap by providing a broad review of recent methods for graph pooling. Specifically, 1) we first propose a taxonomy of existing graph pooling methods with a mathematical summary for each category; 2) then, we provide an overview of the libraries related to graph pooling, including the commonly used datasets, model architectures for downstream tasks, and open-source implementations; 3) next, we further outline the applications that incorporate the idea of graph pooling in a variety of domains; 4) finally, we discuss certain critical challenges facing current studies and share our insights on future potential directions for research on the improvement of graph pooling.
On Exploring Node-feature and Graph-structure Diversities for Node Drop Graph PoolingChuang Liu, Yibing Zhan, Baosheng Yu et al.
A pooling operation is essential for effective graph-level representation learning, where the node drop pooling has become one mainstream graph pooling technology. However, current node drop pooling methods usually keep the top-k nodes according to their significance scores, which ignore the graph diversity in terms of the node features and the graph structures, thus resulting in suboptimal graph-level representations. To address the aforementioned issue, we propose a novel plug-and-play score scheme and refer to it as MID, which consists of a \textbf{M}ultidimensional score space with two operations, \textit{i.e.}, fl\textbf{I}pscore and \textbf{D}ropscore. Specifically, the multidimensional score space depicts the significance of nodes through multiple criteria; the flipscore encourages the maintenance of dissimilar node features; and the dropscore forces the model to notice diverse graph structures instead of being stuck in significant local structures. To evaluate the effectiveness of our proposed MID, we perform extensive experiments by applying it to a wide variety of recent node drop pooling methods, including TopKPool, SAGPool, GSAPool, and ASAP. Specifically, the proposed MID can efficiently and consistently achieve about 2.8\% average improvements over the above four methods on seventeen real-world graph classification datasets, including four social datasets (IMDB-BINARY, IMDB-MULTI, REDDIT-BINARY, and COLLAB), and thirteen biochemical datasets (D\&D, PROTEINS, NCI1, MUTAG, PTC-MR, NCI109, ENZYMES, MUTAGENICITY, FRANKENSTEIN, HIV, BBBP, TOXCAST, and TOX21). Code is available at~\url{https://github.com/whuchuang/mid}.
17.7LGJul 18, 2022
Comprehensive Graph Gradual Pruning for Sparse Training in Graph Neural NetworksChuang Liu, Xueqi Ma, Yibing Zhan et al.
Graph Neural Networks (GNNs) tend to suffer from high computation costs due to the exponentially increasing scale of graph data and the number of model parameters, which restricts their utility in practical applications. To this end, some recent works focus on sparsifying GNNs with the lottery ticket hypothesis (LTH) to reduce inference costs while maintaining performance levels. However, the LTH-based methods suffer from two major drawbacks: 1) they require exhaustive and iterative training of dense models, resulting in an extremely large training computation cost, and 2) they only trim graph structures and model parameters but ignore the node feature dimension, where significant redundancy exists. To overcome the above limitations, we propose a comprehensive graph gradual pruning framework termed CGP. This is achieved by designing a during-training graph pruning paradigm to dynamically prune GNNs within one training process. Unlike LTH-based methods, the proposed CGP approach requires no re-training, which significantly reduces the computation costs. Furthermore, we design a co-sparsifying strategy to comprehensively trim all three core elements of GNNs: graph structures, node features, and model parameters. Meanwhile, aiming at refining the pruning operation, we introduce a regrowth process into our CGP framework, in order to re-establish the pruned but important connections. The proposed CGP is evaluated by using a node classification task across 6 GNN architectures, including shallow models (GCN and GAT), shallow-but-deep-propagation models (SGC and APPNP), and deep models (GCNII and ResGCN), on a total of 14 real-world graph datasets, including large-scale graph datasets from the challenging Open Graph Benchmark. Experiments reveal that our proposed strategy greatly improves both training and inference efficiency while matching or even exceeding the accuracy of existing methods.
Vega-MT: The JD Explore Academy Translation System for WMT22Changtong Zan, Keqin Peng, Liang Ding et al.
We describe the JD Explore Academy's submission of the WMT 2022 shared general translation task. We participated in all high-resource tracks and one medium-resource track, including Chinese-English, German-English, Czech-English, Russian-English, and Japanese-English. We push the limit of our previous work -- bidirectional training for translation by scaling up two main factors, i.e. language pairs and model sizes, namely the \textbf{Vega-MT} system. As for language pairs, we scale the "bidirectional" up to the "multidirectional" settings, covering all participating languages, to exploit the common knowledge across languages, and transfer them to the downstream bilingual tasks. As for model sizes, we scale the Transformer-Big up to the extremely large model that owns nearly 4.7 Billion parameters, to fully enhance the model capacity for our Vega-MT. Also, we adopt the data augmentation strategies, e.g. cycle translation for monolingual data, and bidirectional self-training for bilingual and monolingual data, to comprehensively exploit the bilingual and monolingual data. To adapt our Vega-MT to the general domain test set, generalization tuning is designed. Based on the official automatic scores of constrained systems, in terms of the sacreBLEU shown in Figure-1, we got the 1st place on {Zh-En (33.5), En-Zh (49.7), De-En (33.7), En-De (37.8), Cs-En (54.9), En-Cs (41.4) and En-Ru (32.7)}, 2nd place on {Ru-En (45.1) and Ja-En (25.6)}, and 3rd place on {En-Ja(41.5)}, respectively; W.R.T the COMET, we got the 1st place on {Zh-En (45.1), En-Zh (61.7), De-En (58.0), En-De (63.2), Cs-En (74.7), Ru-En (64.9), En-Ru (69.6) and En-Ja (65.1)}, 2nd place on {En-Cs (95.3) and Ja-En (40.6)}, respectively.
Multi-objective Pointer Network for Combinatorial OptimizationLe-yang Gao, Rui Wang, Chuang Liu et al.
Multi-objective combinatorial optimization problems (MOCOPs), one type of complex optimization problems, widely exist in various real applications. Although meta-heuristics have been successfully applied to address MOCOPs, the calculation time is often much longer. Recently, a number of deep reinforcement learning (DRL) methods have been proposed to generate approximate optimal solutions to the combinatorial optimization problems. However, the existing studies on DRL have seldom focused on MOCOPs. This study proposes a single-model deep reinforcement learning framework, called multi-objective Pointer Network (MOPN), where the input structure of PN is effectively improved so that the single PN is capable of solving MOCOPs. In addition, two training strategies, based on representative model and transfer learning, respectively, are proposed to further enhance the performance of MOPN in different application scenarios. Moreover, compared to classical meta-heuristics, MOPN only consumes much less time on forward propagation to obtain the Pareto front. Meanwhile, MOPN is insensitive to problem scale, meaning that a trained MOPN is able to address MOCOPs with different scales. To verify the performance of MOPN, extensive experiments are conducted on three multi-objective traveling salesman problems, in comparison with one state-of-the-art model DRL-MOA and three classical multi-objective meta-heuristics. Experimental results demonstrate that the proposed model outperforms all the comparative methods with only 20\% to 40\% training time of DRL-MOA.
16.4CLMar 18, 2024Code
OpenEval: Benchmarking Chinese LLMs across Capability, Alignment and SafetyChuang Liu, Linhao Yu, Jiaxuan Li et al.
The rapid development of Chinese large language models (LLMs) poses big challenges for efficient LLM evaluation. While current initiatives have introduced new benchmarks or evaluation platforms for assessing Chinese LLMs, many of these focus primarily on capabilities, usually overlooking potential alignment and safety issues. To address this gap, we introduce OpenEval, an evaluation testbed that benchmarks Chinese LLMs across capability, alignment and safety. For capability assessment, we include 12 benchmark datasets to evaluate Chinese LLMs from 4 sub-dimensions: NLP tasks, disciplinary knowledge, commonsense reasoning and mathematical reasoning. For alignment assessment, OpenEval contains 7 datasets that examines the bias, offensiveness and illegalness in the outputs yielded by Chinese LLMs. To evaluate safety, especially anticipated risks (e.g., power-seeking, self-awareness) of advanced LLMs, we include 6 datasets. In addition to these benchmarks, we have implemented a phased public evaluation and benchmark update strategy to ensure that OpenEval is in line with the development of Chinese LLMs or even able to provide cutting-edge benchmark datasets to guide the development of Chinese LLMs. In our first public evaluation, we have tested a range of Chinese LLMs, spanning from 7B to 72B parameters, including both open-source and proprietary models. Evaluation results indicate that while Chinese LLMs have shown impressive performance in certain tasks, more attention should be directed towards broader aspects such as commonsense reasoning, alignment, and safety.
2.0LGNov 21, 2023
Careful Selection and Thoughtful Discarding: Graph Explicit Pooling Utilizing Discarded NodesChuang Liu, Wenhang Yu, Kuang Gao et al.
Graph pooling has been increasingly recognized as crucial for Graph Neural Networks (GNNs) to facilitate hierarchical graph representation learning. Existing graph pooling methods commonly consist of two stages: selecting top-ranked nodes and discarding the remaining to construct coarsened graph representations. However, this paper highlights two key issues with these methods: 1) The process of selecting nodes to discard frequently employs additional Graph Convolutional Networks or Multilayer Perceptrons, lacking a thorough evaluation of each node's impact on the final graph representation and subsequent prediction tasks. 2) Current graph pooling methods tend to directly discard the noise segment (dropped) of the graph without accounting for the latent information contained within these elements. To address the first issue, we introduce a novel Graph Explicit Pooling (GrePool) method, which selects nodes by explicitly leveraging the relationships between the nodes and final representation vectors crucial for classification. The second issue is addressed using an extended version of GrePool (i.e., GrePool+), which applies a uniform loss on the discarded nodes. This addition is designed to augment the training process and improve classification accuracy. Furthermore, we conduct comprehensive experiments across 12 widely used datasets to validate our proposed method's effectiveness, including the Open Graph Benchmark datasets. Our experimental results uniformly demonstrate that GrePool outperforms 14 baseline methods for most datasets. Likewise, implementing GrePool+ enhances GrePool's performance without incurring additional computational costs.
M3KE: A Massive Multi-Level Multi-Subject Knowledge Evaluation Benchmark for Chinese Large Language ModelsChuang Liu, Renren Jin, Yuqi Ren et al.
Large language models have recently made tremendous progress in a variety of aspects, e.g., cross-task generalization, instruction following. Comprehensively evaluating the capability of large language models in multiple tasks is of great importance. In this paper, we propose M3KE, a Massive Multi-Level Multi-Subject Knowledge Evaluation benchmark, which is developed to measure knowledge acquired by Chinese large language models by testing their multitask accuracy in zero- and few-shot settings. We have collected 20,477 questions from 71 tasks. Our selection covers all major levels of Chinese education system, ranging from the primary school to college, as well as a wide variety of subjects, including humanities, history, politics, law, education, psychology, science, technology, art and religion. All questions are multiple-choice questions with four options, hence guaranteeing a standardized and unified assessment process. We've assessed a number of state-of-the-art open-source Chinese large language models on the proposed benchmark. The size of these models varies from 335M to 130B parameters. Experiment results demonstrate that they perform significantly worse than GPT-3.5 that reaches an accuracy of ~ 48% on M3KE. The dataset is available at https://github.com/tjunlp-lab/M3KE.
6.6LGDec 9, 2023
Exploring Sparsity in Graph TransformersChuang Liu, Yibing Zhan, Xueqi Ma et al.
Graph Transformers (GTs) have achieved impressive results on various graph-related tasks. However, the huge computational cost of GTs hinders their deployment and application, especially in resource-constrained environments. Therefore, in this paper, we explore the feasibility of sparsifying GTs, a significant yet under-explored topic. We first discuss the redundancy of GTs based on the characteristics of existing GT models, and then propose a comprehensive \textbf{G}raph \textbf{T}ransformer \textbf{SP}arsification (GTSP) framework that helps to reduce the computational complexity of GTs from four dimensions: the input graph data, attention heads, model layers, and model weights. Specifically, GTSP designs differentiable masks for each individual compressible component, enabling effective end-to-end pruning. We examine our GTSP through extensive experiments on prominent GTs, including GraphTrans, Graphormer, and GraphGPS. The experimental results substantiate that GTSP effectively cuts computational costs, accompanied by only marginal decreases in accuracy or, in some cases, even improvements. For instance, GTSP yields a reduction of 30\% in Floating Point Operations while contributing to a 1.8\% increase in Area Under the Curve accuracy on OGBG-HIV dataset. Furthermore, we provide several insights on the characteristics of attention heads and the behavior of attention mechanisms, all of which have immense potential to inspire future research endeavors in this domain.
Hi-GMAE: Hierarchical Graph Masked AutoencodersChuang Liu, Zelin Yao, Yibing Zhan et al.
Graph Masked Autoencoders (GMAEs) have emerged as a notable self-supervised learning approach for graph-structured data. Existing GMAE models primarily focus on reconstructing node-level information, categorizing them as single-scale GMAEs. This methodology, while effective in certain contexts, tends to overlook the complex hierarchical structures inherent in many real-world graphs. For instance, molecular graphs exhibit a clear hierarchical organization in the form of the atoms-functional groups-molecules structure. Hence, the inability of single-scale GMAE models to incorporate these hierarchical relationships often leads to their inadequate capture of crucial high-level graph information, resulting in a noticeable decline in performance. To address this limitation, we propose Hierarchical Graph Masked AutoEncoders (Hi-GMAE), a novel multi-scale GMAE framework designed to handle the hierarchical structures within graphs. First, Hi-GMAE constructs a multi-scale graph hierarchy through graph pooling, enabling the exploration of graph structures across different granularity levels. To ensure masking uniformity of subgraphs across these scales, we propose a novel coarse-to-fine strategy that initiates masking at the coarsest scale and progressively back-projects the mask to the finer scales. Furthermore, we integrate a gradual recovery strategy with the masking process to mitigate the learning challenges posed by completely masked subgraphs. Diverging from the standard graph neural network (GNN) used in GMAE models, Hi-GMAE modifies its encoder and decoder into hierarchical structures. This entails using GNN at the finer scales for detailed local graph analysis and employing a graph transformer at coarser scales to capture global information. Our experiments on 15 graph datasets consistently demonstrate that Hi-GMAE outperforms 17 state-of-the-art self-supervised competitors.
2.6LGJun 1, 2024
Dual-perspective Cross Contrastive Learning in Graph TransformersZelin Yao, Chuang Liu, Xueqi Ma et al.
Graph contrastive learning (GCL) is a popular method for leaning graph representations by maximizing the consistency of features across augmented views. Traditional GCL methods utilize single-perspective i.e. data or model-perspective) augmentation to generate positive samples, restraining the diversity of positive samples. In addition, these positive samples may be unreliable due to uncontrollable augmentation strategies that potentially alter the semantic information. To address these challenges, this paper proposed a innovative framework termed dual-perspective cross graph contrastive learning (DC-GCL), which incorporates three modifications designed to enhance positive sample diversity and reliability: 1) We propose dual-perspective augmentation strategy that provide the model with more diverse training data, enabling the model effective learning of feature consistency across different views. 2) From the data perspective, we slightly perturb the original graphs using controllable data augmentation, effectively preserving their semantic information. 3) From the model perspective, we enhance the encoder by utilizing more powerful graph transformers instead of graph neural networks. Based on the model's architecture, we propose three pruning-based strategies to slightly perturb the encoder, providing more reliable positive samples. These modifications collectively form the DC-GCL's foundation and provide more diverse and reliable training inputs, offering significant improvements over traditional GCL methods. Extensive experiments on various benchmarks demonstrate that DC-GCL consistently outperforms different baselines on various datasets and tasks.
23.7CLMar 19, 2024
LHMKE: A Large-scale Holistic Multi-subject Knowledge Evaluation Benchmark for Chinese Large Language ModelsChuang Liu, Renren Jin, Yuqi Ren et al.
Chinese Large Language Models (LLMs) have recently demonstrated impressive capabilities across various NLP benchmarks and real-world applications. However, the existing benchmarks for comprehensively evaluating these LLMs are still insufficient, particularly in terms of measuring knowledge that LLMs capture. Current datasets collect questions from Chinese examinations across different subjects and educational levels to address this issue. Yet, these benchmarks primarily focus on objective questions such as multiple-choice questions, leading to a lack of diversity in question types. To tackle this problem, we propose LHMKE, a Large-scale, Holistic, and Multi-subject Knowledge Evaluation benchmark in this paper. LHMKE is designed to provide a comprehensive evaluation of the knowledge acquisition capabilities of Chinese LLMs. It encompasses 10,465 questions across 75 tasks covering 30 subjects, ranging from primary school to professional certification exams. Notably, LHMKE includes both objective and subjective questions, offering a more holistic evaluation of the knowledge level of LLMs. We have assessed 11 Chinese LLMs under the zero-shot setting, which aligns with real examinations, and compared their performance across different subjects. We also conduct an in-depth analysis to check whether GPT-4 can automatically score subjective predictions. Our findings suggest that LHMKE is a challenging and advanced testbed for Chinese LLMs.
1.2SOC-PHAug 3, 2021
Effective Model Integration Algorithm for Improving Link and Sign Prediction in Complex NetworksChuang Liu, Shimin Yu, Ying Huang et al.
Link and sign prediction in complex networks bring great help to decision-making and recommender systems, such as in predicting potential relationships or relative status levels. Many previous studies focused on designing the special algorithms to perform either link prediction or sign prediction. In this work, we propose an effective model integration algorithm consisting of network embedding, network feature engineering, and an integrated classifier, which can perform the link and sign prediction in the same framework. Network embedding can accurately represent the characteristics of topological structures and cooperate with the powerful network feature engineering and integrated classifier can achieve better prediction. Experiments on several datasets show that the proposed model can achieve state-of-the-art or competitive performance for both link and sign prediction in spite of its generality. Interestingly, we find that using only very low network embedding dimension can generate high prediction performance, which can significantly reduce the computational overhead during training and prediction. This study offers a powerful methodology for multi-task prediction in complex networks.