Zhenxi Lin

Ling Yue, Yongqi Zhang, Quanming Yao et al. · tencent-ai

Knowledge graph (KG) embedding is a fundamental task in natural language processing, and various methods have been proposed to explore semantic patterns in distinctive ways. In this paper, we propose to learn an ensemble by leveraging existing methods in a relation-aware manner. However, exploring these semantics using relation-aware ensemble leads to a much larger search space than general ensemble methods. To address this issue, we propose a divide-search-combine algorithm RelEns-DSC that searches the relation-wise ensemble weights independently. This algorithm has the same computation cost as general ensemble methods but with much better performance. Experimental results on benchmark datasets demonstrate the effectiveness of the proposed method in efficiently searching relation-aware ensemble weights and achieving state-of-the-art embedding performance. The code is public at https://github.com/LARS-research/RelEns.

Zhenxi Lin, Ziheng Zhang, Meng Wang et al. · tencent-ai

Multi-modal entity alignment aims to identify equivalent entities between two different multi-modal knowledge graphs, which consist of structural triples and images associated with entities. Most previous works focus on how to utilize and encode information from different modalities, while it is not trivial to leverage multi-modal knowledge in entity alignment because of the modality heterogeneity. In this paper, we propose MCLEA, a Multi-modal Contrastive Learning based Entity Alignment model, to obtain effective joint representations for multi-modal entity alignment. Different from previous works, MCLEA considers task-oriented modality and models the inter-modal relationships for each entity representation. In particular, MCLEA firstly learns multiple individual representations from multiple modalities, and then performs contrastive learning to jointly model intra-modal and inter-modal interactions. Extensive experimental results show that MCLEA outperforms state-of-the-art baselines on public datasets under both supervised and unsupervised settings.

Yongqi Zhang, Quanming Yao, Ling Yue et al. · tencent-ai

Accurately predicting drug-drug interactions (DDI) for emerging drugs, which offer possibilities for treating and alleviating diseases, with computational methods can improve patient care and contribute to efficient drug development. However, many existing computational methods require large amounts of known DDI information, which is scarce for emerging drugs. In this paper, we propose EmerGNN, a graph neural network (GNN) that can effectively predict interactions for emerging drugs by leveraging the rich information in biomedical networks. EmerGNN learns pairwise representations of drugs by extracting the paths between drug pairs, propagating information from one drug to the other, and incorporating the relevant biomedical concepts on the paths. The different edges on the biomedical network are weighted to indicate the relevance for the target DDI prediction. Overall, EmerGNN has higher accuracy than existing approaches in predicting interactions for emerging drugs and can identify the most relevant information on the biomedical network.

Derong Xu, Ziheng Zhang, Zhenxi Lin et al. · tencent-ai

Knowledge graph completion (KGC) is a widely used method to tackle incompleteness in knowledge graphs (KGs) by making predictions for missing links. Description-based KGC leverages pre-trained language models to learn entity and relation representations with their names or descriptions, which shows promising results. However, the performance of description-based KGC is still limited by the quality of text and the incomplete structure, as it lacks sufficient entity descriptions and relies solely on relation names, leading to sub-optimal results. To address this issue, we propose MPIKGC, a general framework to compensate for the deficiency of contextualized knowledge and improve KGC by querying large language models (LLMs) from various perspectives, which involves leveraging the reasoning, explanation, and summarization capabilities of LLMs to expand entity descriptions, understand relations, and extract structures, respectively. We conducted extensive evaluation of the effectiveness and improvement of our framework based on four description-based KGC models and four datasets, for both link prediction and triplet classification tasks.

Derong Xu, Ziheng Zhang, Zhihong Zhu et al. · tencent-ai

Model editing aims to precisely alter the behaviors of large language models (LLMs) in relation to specific knowledge, while leaving unrelated knowledge intact. This approach has proven effective in addressing issues of hallucination and outdated information in LLMs. However, the potential of using model editing to modify knowledge in the medical field remains largely unexplored, even though resolving hallucination is a pressing need in this area. Our observations indicate that current methods face significant challenges in dealing with specialized and complex knowledge in medical domain. Therefore, we propose MedLaSA, a novel Layer-wise Scalable Adapter strategy for medical model editing. MedLaSA harnesses the strengths of both adding extra parameters and locate-then-edit methods for medical model editing. We utilize causal tracing to identify the association of knowledge in neurons across different layers, and generate a corresponding scale set from the association value for each piece of knowledge. Subsequently, we incorporate scalable adapters into the dense layers of LLMs. These adapters are assigned scaling values based on the corresponding specific knowledge, which allows for the adjustment of the adapter's weight and rank. The more similar the content, the more consistent the scale between them. This ensures precise editing of semantically identical knowledge while avoiding impact on unrelated knowledge. To evaluate the editing impact on the behaviours of LLMs, we propose two model editing studies for medical domain: (1) editing factual knowledge for medical specialization and (2) editing the explanatory ability for complex knowledge. We build two novel medical benchmarking datasets and introduce a series of challenging and comprehensive metrics. Extensive experiments on medical LLMs demonstrate the editing efficiency of MedLaSA, without affecting unrelated knowledge.

Derong Xu, Xinhang Li, Ziheng Zhang et al. · tencent-ai

Large Language Models (LLMs) demonstrate remarkable capabilities, yet struggle with hallucination and outdated knowledge when tasked with complex knowledge reasoning, resulting in factually incorrect outputs. Previous studies have attempted to mitigate it by retrieving factual knowledge from large-scale knowledge graphs (KGs) to assist LLMs in logical reasoning and prediction of answers. However, this kind of approach often introduces noise and irrelevant data, especially in situations with extensive context from multiple knowledge aspects. In this way, LLM attention can be potentially mislead from question and relevant information. In our study, we introduce an Adaptive Multi-Aspect Retrieval-augmented over KGs (Amar) framework. This method retrieves knowledge including entities, relations, and subgraphs, and converts each piece of retrieved text into prompt embeddings. The Amar framework comprises two key sub-components: 1) a self-alignment module that aligns commonalities among entities, relations, and subgraphs to enhance retrieved text, thereby reducing noise interference; 2) a relevance gating module that employs a soft gate to learn the relevance score between question and multi-aspect retrieved data, to determine which information should be used to enhance LLMs' output, or even filtered altogether. Our method has achieved state-of-the-art performance on two common datasets, WebQSP and CWQ, showing a 1.9\% improvement in accuracy over its best competitor and a 6.6\% improvement in logical form generation over a method that directly uses retrieved text as context prompts. These results demonstrate the effectiveness of Amar in improving the reasoning of LLMs.

Yimin Deng, Zhenxi Lin, Yejing Wang et al.

Diagnostic prediction and clinical reasoning are critical tasks in healthcare applications. While Large Language Models (LLMs) have shown strong capabilities in commonsense reasoning, they still struggle with diagnostic reasoning due to limited domain knowledge. Existing approaches often rely on internal model knowledge or static knowledge bases, resulting in knowledge insufficiency and limited adaptability, which hinder their capacity to perform diagnostic reasoning. Moreover, these methods focus solely on the accuracy of final predictions, overlooking alignment with standard clinical reasoning trajectories. To this end, we propose MultiDx, a two-stage diagnostic reasoning framework that performs differential diagnosis by analyzing evidence collected from multiple knowledge sources. Specifically, it first generates suspected diagnoses and reasoning paths by leveraging knowledge from web search, SOAP-formatted case, and clinical case database. Then it integrates multi-perspective evidence through matching, voting, and differential diagnosis to generate the final prediction.~Extensive experiments on two public benchmarks demonstrate the effectiveness of our approach.

Yimin Deng, Yejing Wang, Zhenxi Lin et al.

Large language models have demonstrated strong reasoning capabilities in general knowledge question answering. However, their ability to handle temporal information remains limited. To address this limitation, existing approaches often involve external tools or manual verification and are tailored to specific scenarios, leading to poor generalizability. Moreover, these methods apply a fixed pipeline to all questions, overlooking the fact that different types of temporal questions require distinct reasoning strategies, which leads to unnecessary processing for simple cases and inadequate reasoning for complex ones. To this end, we propose AdapTime, an adaptive temporal reasoning method that dynamically executes reasoning steps based on the input context. Specifically, it involves three temporal reasoning actions: reformulate, rewrite and review, with an LLM planner guiding the reasoning process. AdapTime integrates seamlessly with state-of-the-art LLMs and significantly enhances their temporal reasoning capabilities without relying on external support. Extensive experiments demonstrate the effectiveness of our approach.

Derong Xu, Ziheng Zhang, Zhihong Zhu et al. · tencent-ai

The impressive capabilities of large language models (LLMs) have attracted extensive interests of applying LLMs to medical field. However, the complex nature of clinical environments presents significant hallucination challenges for LLMs, hindering their widespread adoption. In this paper, we address these hallucination issues in the context of Medical Information Extraction (MIE) tasks by introducing ALternate Contrastive Decoding (ALCD). We begin by redefining MIE tasks as an identify-and-classify process. We then separate the identification and classification functions of LLMs by selectively masking the optimization of tokens during fine-tuning. During the inference stage, we alternately contrast output distributions derived from sub-task models. This approach aims to selectively enhance the identification and classification capabilities while minimizing the influence of other inherent abilities in LLMs. Additionally, we propose an alternate adaptive constraint strategy to more effectively adjust the scale and scope of contrastive tokens. Through comprehensive experiments on two different backbones and six diverse medical information extraction tasks, ALCD demonstrates significant improvements in resolving hallucination issues compared to conventional decoding methods.

Zhenxi Lin, Ziheng Zhang, Xian Wu et al. · tencent-ai

Although biomedical entity linking (BioEL) has made significant progress with pre-trained language models, challenges still exist for fine-grained and long-tailed entities. To address these challenges, we present BioELQA, a novel model that treats Biomedical Entity Linking as Multiple Choice Question Answering. BioELQA first obtains candidate entities with a fast retriever, jointly presents the mention and candidate entities to a generator, and then outputs the predicted symbol associated with its chosen entity. This formulation enables explicit comparison of different candidate entities, thus capturing fine-grained interactions between mentions and entities, as well as among entities themselves. To improve generalization for long-tailed entities, we retrieve similar labeled training instances as clues and concatenate the input with retrieved instances for the generator. Extensive experimental results show that BioELQA outperforms state-of-the-art baselines on several datasets.

Zhenxi Lin, Ziheng Zhang, Xian Wu et al. · tencent-ai

Biomedical entity linking (BioEL) has achieved remarkable progress with the help of pre-trained language models. However, existing BioEL methods usually struggle to handle rare and difficult entities due to long-tailed distribution. To address this limitation, we introduce a new scheme $k$NN-BioEL, which provides a BioEL model with the ability to reference similar instances from the entire training corpus as clues for prediction, thus improving the generalization capabilities. Moreover, we design a contrastive learning objective with dynamic hard negative sampling (DHNS) that improves the quality of the retrieved neighbors during inference. Extensive experimental results show that $k$NN-BioEL outperforms state-of-the-art baselines on several datasets.

Huawen Feng, Zhenxi Lin, Qianli Ma

In text classification, the traditional attention mechanisms usually focus too much on frequent words, and need extensive labeled data in order to learn. This paper proposes a perturbation-based self-supervised attention approach to guide attention learning without any annotation overhead. Specifically, we add as much noise as possible to all the words in the sentence without changing their semantics and predictions. We hypothesize that words that tolerate more noise are less significant, and we can use this information to refine the attention distribution. Experimental results on three text classification tasks show that our approach can significantly improve the performance of current attention-based models, and is more effective than existing self-supervised methods. We also provide a visualization analysis to verify the effectiveness of our approach.

Yuejia Xiang, Ziheng Zhang, Jiaoyan Chen et al.

Semantic embedding has been widely investigated for aligning knowledge graph (KG) entities. Current methods have explored and utilized the graph structure, the entity names and attributes, but ignore the ontology (or ontological schema) which contains critical meta information such as classes and their membership relationships with entities. In this paper, we propose an ontology-guided entity alignment method named OntoEA, where both KGs and their ontologies are jointly embedded, and the class hierarchy and the class disjointness are utilized to avoid false mappings. Extensive experiments on seven public and industrial benchmarks have demonstrated the state-of-the-art performance of OntoEA and the effectiveness of the ontologies.