Xuan Wang

Anguo Dong, Cuiyun Gao, Yan Jia et al.

Aspect-based sentiment analysis (ABSA) aims at extracting opinionated aspect terms in review texts and determining their sentiment polarities, which is widely studied in both academia and industry. As a fine-grained classification task, the annotation cost is extremely high. Domain adaptation is a popular solution to alleviate the data deficiency issue in new domains by transferring common knowledge across domains. Most cross-domain ABSA studies are based on structure correspondence learning (SCL), and use pivot features to construct auxiliary tasks for narrowing down the gap between domains. However, their pivot-based auxiliary tasks can only transfer knowledge of aspect terms but not sentiment, limiting the performance of existing models. In this work, we propose a novel Syntax-guided Domain Adaptation Model, named SDAM, for more effective cross-domain ABSA. SDAM exploits syntactic structure similarities for building pseudo training instances, during which aspect terms of target domain are explicitly related to sentiment polarities. Besides, we propose a syntax-based BERT mask language model for further capturing domain-invariant features. Finally, to alleviate the sentiment inconsistency issue in multi-gram aspect terms, we introduce a span-based joint aspect term and sentiment analysis module into the cross-domain End2End ABSA. Experiments on five benchmark datasets show that our model consistently outperforms the state-of-the-art baselines with respect to Micro-F1 metric for the cross-domain End2End ABSA task.

Yu Zhang, Yu Meng, Xuan Wang et al.

Discovering latent topics from text corpora has been studied for decades. Many existing topic models adopt a fully unsupervised setting, and their discovered topics may not cater to users' particular interests due to their inability of leveraging user guidance. Although there exist seed-guided topic discovery approaches that leverage user-provided seeds to discover topic-representative terms, they are less concerned with two factors: (1) the existence of out-of-vocabulary seeds and (2) the power of pre-trained language models (PLMs). In this paper, we generalize the task of seed-guided topic discovery to allow out-of-vocabulary seeds. We propose a novel framework, named SeeTopic, wherein the general knowledge of PLMs and the local semantics learned from the input corpus can mutually benefit each other. Experiments on three real datasets from different domains demonstrate the effectiveness of SeeTopic in terms of topic coherence, accuracy, and diversity.

Jingya Zang, Cuiyun Gao, Yupan Chen et al.

Reviews of songs play an important role in online music service platforms. Prior research shows that users can make quicker and more informed decisions when presented with meaningful song reviews. However, reviews of music songs are generally long in length and most of them are non-informative for users. It is difficult for users to efficiently grasp meaningful messages for making decisions. To solve this problem, one practical strategy is to provide tips, i.e., short, concise, empathetic, and self-contained descriptions about songs. Tips are produced from song reviews and should express non-trivial insights about the songs. To the best of our knowledge, no prior studies have explored the tip generation task in music domain. In this paper, we create a dataset named MTips for the task and propose a framework named GENTMS for automatically generating tips from song reviews. The dataset involves 8,003 Chinese tips/non-tips from 128 songs which are distributed in five different song genres. Experimental results show that GENTMS achieves top-10 precision at 85.56%, outperforming the baseline models by at least 3.34%. Besides, to simulate the practical usage of our proposed framework, we also experiment with previously-unseen songs, during which GENTMS also achieves the best performance with top-10 precision at 78.89% on average. The results demonstrate the effectiveness of the proposed framework in tip generation of the music domain.

Priyanka Kargupta, Tanay Komarlu, Susik Yoon et al.

Text classification is essential for organizing unstructured text. Traditional methods rely on human annotations or, more recently, a set of class seed words for supervision, which can be costly, particularly for specialized or emerging domains. To address this, using class surface names alone as extremely weak supervision has been proposed. However, existing approaches treat different levels of text granularity (documents, sentences, or words) independently, disregarding inter-granularity class disagreements and the context identifiable exclusively through joint extraction. In order to tackle these issues, we introduce MEGClass, an extremely weakly-supervised text classification method that leverages Mutually-Enhancing Text Granularities. MEGClass utilizes coarse- and fine-grained context signals obtained by jointly considering a document's most class-indicative words and sentences. This approach enables the learning of a contextualized document representation that captures the most discriminative class indicators. By preserving the heterogeneity of potential classes, MEGClass can select the most informative class-indicative documents as iterative feedback to enhance the initial word-based class representations and ultimately fine-tune a pre-trained text classifier. Extensive experiments on seven benchmark datasets demonstrate that MEGClass outperforms other weakly and extremely weakly supervised methods.

Yi Fang, Haoran Xu, Jiaxin Han et al.

Foundation models have revolutionized various fields such as natural language processing (NLP) and computer vision (CV). While efforts have been made to transfer the success of the foundation models in general AI domains to biology, existing works focus on directly adopting the existing foundation model architectures from general machine learning domains without a systematic design considering the unique physicochemical and structural properties of each biological data modality. This leads to suboptimal performance, as these repurposed architectures struggle to capture the long-range dependencies, sparse information, and complex underlying ``grammars'' inherent to biological data. To address this gap, we introduce BioArc, a novel framework designed to move beyond intuition-driven architecture design towards principled, automated architecture discovery for biological foundation models. Leveraging Neural Architecture Search (NAS), BioArc systematically explores a vast architecture design space, evaluating architectures across multiple biological modalities while rigorously analyzing the interplay between architecture, tokenization, and training strategies. This large-scale analysis identifies novel, high-performance architectures, allowing us to distill a set of empirical design principles to guide future model development. Furthermore, to make the best of this set of discovered principled architectures, we propose and compare several architecture prediction methods that effectively and efficiently predict optimal architectures for new biological tasks. Overall, our work provides a foundational resource and a principled methodology to guide the creation of the next generation of task-specific and foundation models for biology.

Chufan Gao, Xulin Fan, Jimeng Sun et al.

Relation extraction aims to classify the relationships between two entities into pre-defined categories. While previous research has mainly focused on sentence-level relation extraction, recent studies have expanded the scope to document-level relation extraction. Traditional relation extraction methods heavily rely on human-annotated training data, which is time-consuming and labor-intensive. To mitigate the need for manual annotation, recent weakly-supervised approaches have been developed for sentence-level relation extraction while limited work has been done on document-level relation extraction. Weakly-supervised document-level relation extraction faces significant challenges due to an imbalanced number "no relation" instances and the failure of directly probing pretrained large language models for document relation extraction. To address these challenges, we propose PromptRE, a novel weakly-supervised document-level relation extraction method that combines prompting-based techniques with data programming. Furthermore, PromptRE incorporates the label distribution and entity types as prior knowledge to improve the performance. By leveraging the strengths of both prompting and data programming, PromptRE achieves improved performance in relation classification and effectively handles the "no relation" problem. Experimental results on ReDocRED, a benchmark dataset for document-level relation extraction, demonstrate the superiority of PromptRE over baseline approaches.

Zhenyu Bi, Daniel Hajialigol, Zhongkai Sun et al.

Multi-hop question answering (MHQA) requires a model to retrieve and integrate information from multiple passages to answer a complex question. Recent systems leverage the power of large language models and integrate evidence retrieval with reasoning prompts (e.g., chain-of-thought reasoning) for the MHQA task. However, the complexities in the question types (bridge v.s. comparison questions) and the reasoning types (sequential v.s. parallel reasonings) require more novel and fine-grained prompting methods to enhance the performance of MHQA under the zero-shot setting. In this paper, we propose STOC-TOT, a stochastic tree-of-thought reasoning prompting method with constrained decoding for MHQA and conduct a detailed comparison with other reasoning prompts on different question types and reasoning types. Specifically, we construct a tree-like reasoning structure by prompting the model to break down the original question into smaller sub-questions to form different reasoning paths. In addition, we prompt the model to provide a probability estimation for each reasoning path at each reasoning step. At answer time, we conduct constrained decoding on the model to generate more grounded answers and reduce hallucination. Experiments comparing STOC-TOT with two MHQA datasets and five large language models showed that our framework outperforms other reasoning prompts by a significant margin.

Daniel Hajialigol, Hanwen Liu, Xuan Wang

Text classification aims to effectively categorize documents into pre-defined categories. Traditional methods for text classification often rely on large amounts of manually annotated training data, making the process time-consuming and labor-intensive. To address this issue, recent studies have focused on weakly-supervised and extremely weakly-supervised settings, which require minimal or no human annotation, respectively. In previous methods of weakly supervised text classification, pseudo-training data is generated by assigning pseudo-labels to documents based on their alignment (e.g., keyword matching) with specific classes. However, these methods ignore the importance of incorporating the explanations of the generated pseudo-labels, or saliency of individual words, as additional guidance during the text classification training process. To address this limitation, we propose XAI-CLASS, a novel explanation-enhanced extremely weakly-supervised text classification method that incorporates word saliency prediction as an auxiliary task. XAI-CLASS begins by employing a multi-round question-answering process to generate pseudo-training data that promotes the mutual enhancement of class labels and corresponding explanation word generation. This pseudo-training data is then used to train a multi-task framework that simultaneously learns both text classification and word saliency prediction. Extensive experiments on several weakly-supervised text classification datasets show that XAI-CLASS outperforms other weakly-supervised text classification methods significantly. Moreover, experiments demonstrate that XAI-CLASS enhances both model performance and explainability.

Zhenyu Bi, Sajib Acharjee Dip, Daniel Hajialigol et al.

The capabilities of AI for biomedicine span a wide spectrum, from the atomic level, where it solves partial differential equations for quantum systems, to the molecular level, predicting chemical or protein structures, and further extending to societal predictions like infectious disease outbreaks. Recent advancements in large language models, exemplified by models like ChatGPT, have showcased significant prowess in natural language tasks, such as translating languages, constructing chatbots, and answering questions. When we consider biomedical data, we observe a resemblance to natural language in terms of sequences: biomedical literature and health records presented as text, biological sequences or sequencing data arranged in sequences, or sensor data like brain signals as time series. The question arises: Can we harness the potential of recent large language models to drive biomedical knowledge discoveries? In this survey, we will explore the application of large language models to three crucial categories of biomedical data: 1) textual data, 2) biological sequences, and 3) brain signals. Furthermore, we will delve into large language model challenges in biomedical research, including ensuring trustworthiness, achieving personalization, and adapting to multi-modal data representation

Xuan Wang, Siyuan Liang, Dongping Liao et al.

Institutions with limited data and computing resources often outsource model training to third-party providers in a semi-honest setting, assuming adherence to prescribed training protocols with pre-defined learning paradigm (e.g., supervised or semi-supervised learning). However, this practice can introduce severe security risks, as adversaries may poison the training data to embed backdoors into the resulting model. Existing detection approaches predominantly rely on statistical analyses, which often fail to maintain universally accurate detection accuracy across different learning paradigms. To address this challenge, we propose a unified backdoor detection framework in the semi-honest setting that exploits cross-examination of model inconsistencies between two independent service providers. Specifically, we integrate central kernel alignment to enable robust feature similarity measurements across different model architectures and learning paradigms, thereby facilitating precise recovery and identification of backdoor triggers. We further introduce backdoor fine-tuning sensitivity analysis to distinguish backdoor triggers from adversarial perturbations, substantially reducing false positives. Extensive experiments demonstrate that our method achieves superior detection performance, improving accuracy by 5.4%, 1.6%, and 11.9% over SoTA baselines across supervised, semi-supervised, and autoregressive learning tasks, respectively. Notably, it is the first to effectively detect backdoors in multimodal large language models, further highlighting its broad applicability and advancing secure deep learning.

Zhenyu Bi, Meng Lu, Yang Li et al.

Large Language Models (LLMs) have shown remarkable reasoning capabilities in mathematical and scientific tasks. To enhance complex reasoning, multi-agent systems have been proposed to harness the collective intelligence of LLM agents. However, existing collaboration structures are either predefined or rely on majority voting or round-table debates, which can suppress correct but less dominant agent contributions. Recent approaches model multi-agent systems as graph networks but optimize purely for agent performance, neglecting the quality of interactions. We hypothesize that effective agent communication is crucial for multi-agent reasoning and that debating quality plays a significant role. To address this, we propose $\ours$, a multi-agent verbal reinforcement learning algorithm that dynamically constructs and refines multi-agent collaboration structures. Our method defines action spaces and a feedback mechanism that evaluates communication robustness and coherence throughout the debate. The final decision is achieved through a majority vote over all the agents. We assess $\ours$ on various reasoning tasks, including mathematical reasoning, creative writing, scientific reasoning, and numerical sorting. Results demonstrate that our approach significantly outperforms single-agent prompting methods and state-of-the-art multi-agent frameworks on diverse tasks.

Zechen Hu, Tong Xu, Xuesu Xiao et al.

Using Reinforcement Learning (RL) to learn new robotic tasks from scratch is often inefficient. Leveraging prior knowledge has the potential to significantly enhance learning efficiency, which, however, raises two critical challenges: how to determine the relevancy of existing knowledge and how to adaptively integrate them into learning a new task. In this paper, we propose Context-aware Adaptation for Robot Learning (CARoL), a novel framework to efficiently learn a similar but distinct new task from prior knowledge. CARoL incorporates context awareness by analyzing state transitions in system dynamics to identify similarities between the new task and prior knowledge. It then utilizes these identified similarities to prioritize and adapt specific knowledge pieces for the new task. Additionally, CARoL has a broad applicability spanning policy-based, value-based, and actor-critic RL algorithms. We validate the efficiency and generalizability of CARoL on both simulated robotic platforms and physical ground vehicles. The simulations include CarRacing and LunarLander environments, where CARoL demonstrates faster convergence and higher rewards when learning policies for new tasks. In real-world experiments, we show that CARoL enables a ground vehicle to quickly and efficiently adapt policies learned in simulation to smoothly traverse real-world off-road terrain.

Aehong Min, Xuan Wang, Rion Brattig Correia et al.

We used a dictionary built from biomedical terminology extracted from various sources such as DrugBank, MedDRA, MedlinePlus, TCMGeneDIT, to tag more than 8 million Instagram posts by users who have mentioned an epilepsy-relevant drug at least once, between 2010 and early 2016. A random sample of 1,771 posts with 2,947 term matches was evaluated by human annotators to identify false-positives. OpenAI's GPT series models were compared against human annotation. Frequent terms with a high false-positive rate were removed from the dictionary. Analysis of the estimated false-positive rates of the annotated terms revealed 8 ambiguous terms (plus synonyms) used in Instagram posts, which were removed from the original dictionary. To study the effect of removing those terms, we constructed knowledge networks using the refined and the original dictionaries and performed an eigenvector-centrality analysis on both networks. We show that the refined dictionary thus produced leads to a significantly different rank of important terms, as measured by their eigenvector-centrality of the knowledge networks. Furthermore, the most important terms obtained after refinement are of greater medical relevance. In addition, we show that OpenAI's GPT series models fare worse than human annotators in this task.

Bibek Poudel, Xuan Wang, Weizi Li et al.

Reinforcement learning (RL) holds significant promise for adaptive traffic signal control. While existing RL-based methods demonstrate effectiveness in reducing vehicular congestion, their predominant focus on vehicle-centric optimization leaves pedestrian mobility needs and safety challenges unaddressed. In this paper, we present a deep RL framework for adaptive control of eight traffic signals along a real-world urban corridor, jointly optimizing both pedestrian and vehicular efficiency. Our single-agent policy is trained using real-world pedestrian and vehicle demand data derived from Wi-Fi logs and video analysis. The results demonstrate significant performance improvements over traditional fixed-time signals, reducing average wait times per pedestrian and per vehicle by up to 67% and 52% respectively, while simultaneously decreasing total wait times for both groups by up to 67% and 53%. Additionally, our results demonstrate generalization capabilities across varying traffic demands, including conditions entirely unseen during training, validating RL's potential for developing transportation systems that serve all road users.

Pengcheng Jiang, Shivam Agarwal, Bowen Jin et al.

The mission of open knowledge graph (KG) completion is to draw new findings from known facts. Existing works that augment KG completion require either (1) factual triples to enlarge the graph reasoning space or (2) manually designed prompts to extract knowledge from a pre-trained language model (PLM), exhibiting limited performance and requiring expensive efforts from experts. To this end, we propose TAGREAL that automatically generates quality query prompts and retrieves support information from large text corpora to probe knowledge from PLM for KG completion. The results show that TAGREAL achieves state-of-the-art performance on two benchmark datasets. We find that TAGREAL has superb performance even with limited training data, outperforming existing embedding-based, graph-based, and PLM-based methods.

Tanay Komarlu, Minhao Jiang, Xuan Wang et al.

Fine-grained entity typing (FET), which assigns entities in text with context-sensitive, fine-grained semantic types, is a basic but important task for knowledge extraction from unstructured text. FET has been studied extensively in natural language processing and typically relies on human-annotated corpora for training, which is costly and difficult to scale. Recent studies explore the utilization of pre-trained language models (PLMs) as a knowledge base to generate rich and context-aware weak supervision for FET. However, a PLM still requires direction and guidance to serve as a knowledge base as they often generate a mixture of rough and fine-grained types, or tokens unsuitable for typing. In this study, we vision that an ontology provides a semantics-rich, hierarchical structure, which will help select the best results generated by multiple PLM models and head words. Specifically, we propose a novel annotation-free, ontology-guided FET method, OntoType, which follows a type ontological structure, from coarse to fine, ensembles multiple PLM prompting results to generate a set of type candidates, and refines its type resolution, under the local context with a natural language inference model. Our experiments on the Ontonotes, FIGER, and NYT datasets using their associated ontological structures demonstrate that our method outperforms the state-of-the-art zero-shot fine-grained entity typing methods as well as a typical LLM method, ChatGPT. Our error analysis shows that refinement of the existing ontology structures will further improve fine-grained entity typing.

Yu Meng, Yunyi Zhang, Jiaxin Huang et al.

We study the problem of training named entity recognition (NER) models using only distantly-labeled data, which can be automatically obtained by matching entity mentions in the raw text with entity types in a knowledge base. The biggest challenge of distantly-supervised NER is that the distant supervision may induce incomplete and noisy labels, rendering the straightforward application of supervised learning ineffective. In this paper, we propose (1) a noise-robust learning scheme comprised of a new loss function and a noisy label removal step, for training NER models on distantly-labeled data, and (2) a self-training method that uses contextualized augmentations created by pre-trained language models to improve the generalization ability of the NER model. On three benchmark datasets, our method achieves superior performance, outperforming existing distantly-supervised NER models by significant margins.

Qingyun Wang, Manling Li, Xuan Wang et al.

To combat COVID-19, both clinicians and scientists need to digest vast amounts of relevant biomedical knowledge in scientific literature to understand the disease mechanism and related biological functions. We have developed a novel and comprehensive knowledge discovery framework, COVID-KG to extract fine-grained multimedia knowledge elements (entities and their visual chemical structures, relations, and events) from scientific literature. We then exploit the constructed multimedia knowledge graphs (KGs) for question answering and report generation, using drug repurposing as a case study. Our framework also provides detailed contextual sentences, subfigures, and knowledge subgraphs as evidence.

Yucong Shen, Li Shen, Hao-Zhi Huang et al.

Recent advances in deep neural networks (DNNs) lead to tremendously growing network parameters, making the deployments of DNNs on platforms with limited resources extremely difficult. Therefore, various pruning methods have been developed to compress the deep network architectures and accelerate the inference process. Most of the existing channel pruning methods discard the less important filters according to well-designed filter ranking criteria. However, due to the limited interpretability of deep learning models, designing an appropriate ranking criterion to distinguish redundant filters is difficult. To address such a challenging issue, we propose a new technique of Channel Pruning via Optimal Transport, dubbed CPOT. Specifically, we locate the Wasserstein barycenter for channels of each layer in the deep models, which is the mean of a set of probability distributions under the optimal transport metric. Then, we prune the redundant information located by Wasserstein barycenters. At last, we empirically demonstrate that, for classification tasks, CPOT outperforms the state-of-the-art methods on pruning ResNet-20, ResNet-32, ResNet-56, and ResNet-110. Furthermore, we show that the proposed CPOT technique is good at compressing the StarGAN models by pruning in the more difficult case of image-to-image translation tasks.

Yu Zhang, Yu Meng, Jiaxin Huang et al.

Document categorization, which aims to assign a topic label to each document, plays a fundamental role in a wide variety of applications. Despite the success of existing studies in conventional supervised document classification, they are less concerned with two real problems: (1) the presence of metadata: in many domains, text is accompanied by various additional information such as authors and tags. Such metadata serve as compelling topic indicators and should be leveraged into the categorization framework; (2) label scarcity: labeled training samples are expensive to obtain in some cases, where categorization needs to be performed using only a small set of annotated data. In recognition of these two challenges, we propose MetaCat, a minimally supervised framework to categorize text with metadata. Specifically, we develop a generative process describing the relationships between words, documents, labels, and metadata. Guided by the generative model, we embed text and metadata into the same semantic space to encode heterogeneous signals. Then, based on the same generative process, we synthesize training samples to address the bottleneck of label scarcity. We conduct a thorough evaluation on a wide range of datasets. Experimental results prove the effectiveness of MetaCat over many competitive baselines.

Xuan Wang, Weili Liu, Aabhas Chauhan et al.

We created this EVIDENCEMINER system for automatic textual evidence mining in COVID-19 literature. EVIDENCEMINER is a web-based system that lets users query a natural language statement and automatically retrieves textual evidence from a background corpora for life sciences. It is constructed in a completely automated way without any human effort for training data annotation. EVIDENCEMINER is supported by novel data-driven methods for distantly supervised named entity recognition and open information extraction. The named entities and meta-patterns are pre-computed and indexed offline to support fast online evidence retrieval. The annotation results are also highlighted in the original document for better visualization. EVIDENCEMINER also includes analytic functionalities such as the most frequent entity and relation summarization.

Xuan Wang, Xiangchen Song, Bangzheng Li et al.

We created this CORD-NER dataset with comprehensive named entity recognition (NER) on the COVID-19 Open Research Dataset Challenge (CORD-19) corpus (2020-03-13). This CORD-NER dataset covers 75 fine-grained entity types: In addition to the common biomedical entity types (e.g., genes, chemicals and diseases), it covers many new entity types related explicitly to the COVID-19 studies (e.g., coronaviruses, viral proteins, evolution, materials, substrates and immune responses), which may benefit research on COVID-19 related virus, spreading mechanisms, and potential vaccines. CORD-NER annotation is a combination of four sources with different NER methods. The quality of CORD-NER annotation surpasses SciSpacy (over 10% higher on the F1 score based on a sample set of documents), a fully supervised BioNER tool. Moreover, CORD-NER supports incrementally adding new documents as well as adding new entity types when needed by adding dozens of seeds as the input examples. We will constantly update CORD-NER based on the incremental updates of the CORD-19 corpus and the improvement of our system.

Yu Zhang, Frank F. Xu, Sha Li et al.

GitHub has become an important platform for code sharing and scientific exchange. With the massive number of repositories available, there is a pressing need for topic-based search. Even though the topic label functionality has been introduced, the majority of GitHub repositories do not have any labels, impeding the utility of search and topic-based analysis. This work targets the automatic repository classification problem as keyword-driven hierarchical classification. Specifically, users only need to provide a label hierarchy with keywords to supply as supervision. This setting is flexible, adaptive to the users' needs, accounts for the different granularity of topic labels and requires minimal human effort. We identify three key challenges of this problem, namely (1) the presence of multi-modal signals; (2) supervision scarcity and bias; (3) supervision format mismatch. In recognition of these challenges, we propose the HiGitClass framework, comprising of three modules: heterogeneous information network embedding; keyword enrichment; topic modeling and pseudo document generation. Experimental results on two GitHub repository collections confirm that HiGitClass is superior to existing weakly-supervised and dataless hierarchical classification methods, especially in its ability to integrate both structured and unstructured data for repository classification.

Xuan Wang, Yu Zhang, Xiang Ren et al.

Motivation: State-of-the-art biomedical named entity recognition (BioNER) systems often require handcrafted features specific to each entity type, such as genes, chemicals and diseases. Although recent studies explored using neural network models for BioNER to free experts from manual feature engineering, the performance remains limited by the available training data for each entity type. Results: We propose a multi-task learning framework for BioNER to collectively use the training data of different types of entities and improve the performance on each of them. In experiments on 15 benchmark BioNER datasets, our multi-task model achieves substantially better performance compared with state-of-the-art BioNER systems and baseline neural sequence labeling models. Further analysis shows that the large performance gains come from sharing character- and word-level information among relevant biomedical entities across differently labeled corpora.