Siqi Li

Zi'an Xu, Yin Dai, Fayu Liu et al.

Background and objective: Parotid gland tumors account for approximately 2% to 10% of head and neck tumors. Preoperative tumor localization, differential diagnosis, and subsequent selection of appropriate treatment for parotid gland tumors are critical. However, the relative rarity of these tumors and the highly dispersed tissue types have left an unmet need for a subtle differential diagnosis of such neoplastic lesions based on preoperative radiomics. Recently, deep learning methods have developed rapidly, especially Transformer beats the traditional convolutional neural network in computer vision. Many new Transformer-based networks have been proposed for computer vision tasks. Methods: In this study, multicenter multimodal parotid gland MR images were collected. The Swin-Unet which was based on Transformer was used. MR images of short time inversion recovery, T1-weighted and T2-weighted modalities were combined into three-channel data to train the network. We achieved segmentation of the region of interest for parotid gland and tumor. Results: The Dice-Similarity Coefficient of the model on the test set was 88.63%, Mean Pixel Accuracy was 99.31%, Mean Intersection over Union was 83.99%, and Hausdorff Distance was 3.04. Then a series of comparison experiments were designed in this paper to further validate the segmentation performance of the algorithm. Conclusions: Experimental results showed that our method has good results for parotid gland and tumor segmentation. The Transformer-based network outperforms the traditional convolutional neural network in the field of medical images.

Siqi Li, Kuang Gong, Ramsey D. Badawi et al.

Image reconstruction of low-count positron emission tomography (PET) data is challenging. Kernel methods address the challenge by incorporating image prior information in the forward model of iterative PET image reconstruction. The kernelized expectation-maximization (KEM) algorithm has been developed and demonstrated to be effective and easy to implement. A common approach for a further improvement of the kernel method would be adding an explicit regularization, which however leads to a complex optimization problem. In this paper, we propose an implicit regularization for the kernel method by using a deep coefficient prior, which represents the kernel coefficient image in the PET forward model using a convolutional neural-network. To solve the maximum-likelihood neural network-based reconstruction problem, we apply the principle of optimization transfer to derive a neural KEM algorithm. Each iteration of the algorithm consists of two separate steps: a KEM step for image update from the projection data and a deep-learning step in the image domain for updating the kernel coefficient image using the neural network. This optimization algorithm is guaranteed to monotonically increase the data likelihood. The results from computer simulations and real patient data have demonstrated that the neural KEM can outperform existing KEM and deep image prior methods.

Siqi Li, Guobao Wang

Image reconstruction for positron emission tomography (PET) is challenging because of the ill-conditioned tomographic problem and low counting statistics. Kernel methods address this challenge by using kernel representation to incorporate image prior information in the forward model of iterative PET image reconstruction. Existing kernel methods construct the kernels commonly using an empirical process, which may lead to unsatisfactory performance. In this paper, we describe the equivalence between the kernel representation and a trainable neural network model. A deep kernel method is then proposed by exploiting a deep neural network to enable automated learning of an improved kernel model and is directly applicable to single subjects in dynamic PET. The training process utilizes available image prior data to form a set of robust kernels in an optimized way rather than empirically. The results from computer simulations and a real patient dataset demonstrate that the proposed deep kernel method can outperform the existing kernel method and neural network method for dynamic PET image reconstruction.

Siqi Li, Guobao Wang

Deep neural networks have a great potential to improve image denoising in low-dose computed tomography (LDCT). Popular ways to increase the network capacity include adding more layers or repeating a modularized clone model in a sequence. In such sequential architectures, the noisy input image and end output image are commonly used only once in the training model, which however limits the overall learning performance. In this paper, we propose a parallel-clone neural network method that utilizes a modularized network model and exploits the benefit of parallel input, parallel-output loss, and clone-toclone feature transfer. The proposed model keeps a similar or less number of unknown network weights as compared to conventional models but can accelerate the learning process significantly. The method was evaluated using the Mayo LDCT dataset and compared with existing deep learning models. The results show that the use of parallel input, parallel-output loss, and clone-to-clone feature transfer all can contribute to an accelerated convergence of deep learning and lead to improved image quality in testing. The parallel-clone network has been demonstrated promising for LDCT image denoising.