Ashkan Ebadi

Ashkan Ebadi, Alain Auger, Yvan Gauthier

Emerging technologies can have major economic impacts and affect strategic stability. Yet, early identification of emerging technologies remains challenging. In order to identify emerging technologies in a timely and reliable manner, a comprehensive examination of relevant scientific and technological (S&T) trends and their related references is required. This examination is generally done by domain experts and requires significant amounts of time and effort to gain insights. The use of domain experts to identify emerging technologies from S&T trends may limit the capacity to analyse large volumes of information and introduce subjectivity in the assessments. Decision support systems are required to provide accurate and reliable evidence-based indicators through constant and continuous monitoring of the environment and help identify signals of emerging technologies that could alter security and economic prosperity. For example, the research field of hypersonics has recently witnessed several advancements having profound technological, commercial, and national security implications. In this work, we present a multi-layer quantitative approach able to identify future signs from scientific publications on hypersonics by leveraging deep learning and weak signal analysis. The proposed framework can help strategic planners and domain experts better identify and monitor emerging technology trends.

Kai Ma, Pengcheng Xi, Karim Habashy et al.

Building AI models with trustworthiness is important especially in regulated areas such as healthcare. In tackling COVID-19, previous work uses convolutional neural networks as the backbone architecture, which has shown to be prone to over-caution and overconfidence in making decisions, rendering them less trustworthy -- a crucial flaw in the context of medical imaging. In this study, we propose a feature learning approach using Vision Transformers, which use an attention-based mechanism, and examine the representation learning capability of Transformers as a new backbone architecture for medical imaging. Through the task of classifying COVID-19 chest radiographs, we investigate into whether generalization capabilities benefit solely from Vision Transformers' architectural advances. Quantitative and qualitative evaluations are conducted on the trustworthiness of the models, through the use of "trust score" computation and a visual explainability technique. We conclude that the attention-based feature learning approach is promising in building trustworthy deep learning models for healthcare.

Kai Ma, Siyuan He, Pengcheng Xi et al.

Computer vision and machine learning are playing an increasingly important role in computer-assisted diagnosis; however, the application of deep learning to medical imaging has challenges in data availability and data imbalance, and it is especially important that models for medical imaging are built to be trustworthy. Therefore, we propose TRUDLMIA, a trustworthy deep learning framework for medical image analysis, which adopts a modular design, leverages self-supervised pre-training, and utilizes a novel surrogate loss function. Experimental evaluations indicate that models generated from the framework are both trustworthy and high-performing. It is anticipated that the framework will support researchers and clinicians in advancing the use of deep learning for dealing with public health crises including COVID-19.

Hilda Azimi, Ashkan Ebadi, Jessy Song et al.

Besides vaccination, as an effective way to mitigate the further spread of COVID-19, fast and accurate screening of individuals to test for the disease is yet necessary to ensure public health safety. We propose COVID-Net UV, an end-to-end hybrid spatio-temporal deep neural network architecture, to detect COVID-19 infection from lung point-of-care ultrasound videos captured by convex transducers. COVID-Net UV comprises a convolutional neural network that extracts spatial features and a recurrent neural network that learns temporal dependence. After careful hyperparameter tuning, the network achieves an average accuracy of 94.44% with no false-negative cases for COVID-19 cases. The goal with COVID-Net UV is to assist front-line clinicians in the fight against COVID-19 via accelerating the screening of lung point-of-care ultrasound videos and automatic detection of COVID-19 positive cases.

Shahab Mosallaie, Andrea Schiffauerova, Ashkan Ebadi

Artificial intelligence (AI) is transforming cancer diagnosis and treatment. The intricate nature of this disease necessitates the collaboration of diverse stakeholders with varied expertise to ensure the effectiveness of cancer research. Despite its importance, forming effective interdisciplinary research teams remains challenging. Understanding and predicting collaboration patterns can help researchers, organizations, and policymakers optimize resources and foster impactful research. We examined co-authorship networks as a proxy for collaboration within AI-driven cancer research. Using 7,738 publications (2000-2017) from Scopus, we constructed 36 overlapping co-authorship networks representing new, persistent, and discontinued collaborations. We engineered both attribute-based and structure-based features and built four machine learning classifiers. Model interpretability was performed using Shapley Additive Explanations (SHAP). Random forest achieved the highest recall for all three types of examined collaborations. The discipline similarity score emerged as a crucial factor, positively affecting new and persistent patterns while negatively impacting discontinued collaborations. Additionally, high productivity and seniority were positively associated with discontinued links. Our findings can guide the formation of effective research teams, enhance interdisciplinary cooperation, and inform strategic policy decisions.

Koosha Shirouyeh, Andrea Schiffauerova, Ashkan Ebadi

Star scientists are highly influential researchers who have made significant contributions to their field, gained widespread recognition, and often attracted substantial research funding. They are critical for the advancement of science and innovation, and they have a significant influence on the transfer of knowledge and technology to industry. Identifying potential star scientists before their performance becomes outstanding is important for recruitment, collaboration, networking, or research funding decisions. Using machine learning techniques, this study proposes a model to predict star scientists in the field of artificial intelligence while highlighting features related to their success. Our results confirm that rising stars follow different patterns compared to their non-rising stars counterparts in almost all the early-career features. We also found that certain features such as gender and ethnic diversity play important roles in scientific collaboration and that they can significantly impact an author's career development and success. The most important features in predicting star scientists in the field of artificial intelligence were the number of articles, group discipline diversity, and weighted degree centrality. The proposed approach offers valuable insights for researchers, practitioners, and funding agencies interested in identifying and supporting talented researchers.

Ali Ghaemmaghami, Andrea Schiffauerova, Ashkan Ebadi

Early identification of emergent topics is of eminent importance due to their potential impacts on society. There are many methods for detecting emerging terms and topics, all with advantages and drawbacks. However, there is no consensus about the attributes and indicators of emergence. In this study, we evaluate emerging topic detection in the field of artificial intelligence using a new method to evaluate emergence. We also introduce two new attributes of collaboration and technological impact which can help us use both paper and patent information simultaneously. Our results confirm that the proposed new method can successfully identify the emerging topics in the period of the study. Moreover, this new method can provide us with the score of each attribute and a final emergence score, which enable us to rank the emerging topics with their emergence scores and each attribute score.

Anahita Hajibabaei, Andrea Schiffauerova, Ashkan Ebadi

Scientific collaboration in almost every discipline is mainly driven by the need of sharing knowledge, expertise, and pooled resources. Science is becoming more complex which has encouraged scientists to involve more in collaborative research projects in order to better address the challenges. As a highly interdisciplinary field with a rapidly evolving scientific landscape, artificial intelligence calls for researchers with special profiles covering a diverse set of skills and expertise. Understanding gender aspects of scientific collaboration is of paramount importance, especially in a field such as artificial intelligence that has been attracting large investments. Using social network analysis, natural language processing, and machine learning and focusing on artificial intelligence publications for the period from 2000 to 2019, in this work, we comprehensively investigated the effects of several driving factors on acquiring key positions in scientific collaboration networks through a gender lens. It was found that, regardless of gender, scientific performance in terms of quantity and impact plays a crucial in possessing the "social researcher" in the network. However, subtle differences were observed between female and male researchers in acquiring the "local influencer" role.

Jessy Song, Ashkan Ebadi, Adrian Florea et al.

As the Coronavirus Disease 2019 (COVID-19) continues to impact many aspects of life and the global healthcare systems, the adoption of rapid and effective screening methods to prevent further spread of the virus and lessen the burden on healthcare providers is a necessity. As a cheap and widely accessible medical image modality, point-of-care ultrasound (POCUS) imaging allows radiologists to identify symptoms and assess severity through visual inspection of the chest ultrasound images. Combined with the recent advancements in computer science, applications of deep learning techniques in medical image analysis have shown promising results, demonstrating that artificial intelligence-based solutions can accelerate the diagnosis of COVID-19 and lower the burden on healthcare professionals. However, the lack of a huge amount of well-annotated data poses a challenge in building effective deep neural networks in the case of novel diseases and pandemics. Motivated by this, we present COVID-Net USPro, an explainable few-shot deep prototypical network, that monitors and detects COVID-19 positive cases with high precision and recall from minimal ultrasound images. COVID-Net USPro achieves 99.65% overall accuracy, 99.7% recall and 99.67% precision for COVID-19 positive cases when trained with only 5 shots. The analytic pipeline and results were verified by our contributing clinician with extensive experience in POCUS interpretation, ensuring that the network makes decisions based on actual patterns.

Ashkan Ebadi, Alain Auger, Yvan Gauthier

Research and development in hypersonics have progressed significantly in recent years, with various military and commercial applications being demonstrated increasingly. Public and private organizations in several countries have been investing in hypersonics, with the aim to overtake their competitors and secure/improve strategic advantage and deterrence. For these organizations, being able to identify emerging technologies in a timely and reliable manner is paramount. Recent advances in information technology have made it possible to analyze large amounts of data, extract hidden patterns, and provide decision-makers with new insights. In this study, we focus on scientific publications about hypersonics within the period of 2000-2020, and employ natural language processing and machine learning to characterize the research landscape by identifying 12 key latent research themes and analyzing their temporal evolution. Our publication similarity analysis revealed patterns that are indicative of cycles during two decades of research. The study offers a comprehensive analysis of the research field and the fact that the research themes are algorithmically extracted removes subjectivity from the exercise and enables consistent comparisons between topics and between time intervals.

Ashkan Ebadi, Patrick Paul, Sofia Auer et al.

Automatic meter reading technology is not yet widespread. Gas, electricity, or water accumulation meters reading is mostly done manually on-site either by an operator or by the homeowner. In some countries, the operator takes a picture as reading proof to confirm the reading by checking offline with another operator and/or using it as evidence in case of conflicts or complaints. The whole process is time-consuming, expensive, and prone to errors. Automation can optimize and facilitate such labor-intensive and human error-prone processes. With the recent advances in the fields of artificial intelligence and computer vision, automatic meter reading systems are becoming more viable than ever. Motivated by the recent advances in the field of artificial intelligence and inspired by open-source open-access initiatives in the research community, we introduce a novel large benchmark dataset of real-life gas meter images, named the NRC-GAMMA dataset. The data were collected from an Itron 400A diaphragm gas meter on January 20, 2020, between 00:05 am and 11:59 pm. We employed a systematic approach to label the images, validate the labellings, and assure the quality of the annotations. The dataset contains 28,883 images of the entire gas meter along with 57,766 cropped images of the left and the right dial displays. We hope the NRC-GAMMA dataset helps the research community to design and implement accurate, innovative, intelligent, and reproducible automatic gas meter reading solutions.

Alexander MacLean, Saad Abbasi, Ashkan Ebadi et al.

The Coronavirus Disease 2019 (COVID-19) pandemic has impacted many aspects of life globally, and a critical factor in mitigating its effects is screening individuals for infections, thereby allowing for both proper treatment for those individuals as well as action to be taken to prevent further spread of the virus. Point-of-care ultrasound (POCUS) imaging has been proposed as a screening tool as it is a much cheaper and easier to apply imaging modality than others that are traditionally used for pulmonary examinations, namely chest x-ray and computed tomography. Given the scarcity of expert radiologists for interpreting POCUS examinations in many highly affected regions around the world, low-cost deep learning-driven clinical decision support solutions can have a large impact during the on-going pandemic. Motivated by this, we introduce COVID-Net US, a highly efficient, self-attention deep convolutional neural network design tailored for COVID-19 screening from lung POCUS images. Experimental results show that the proposed COVID-Net US can achieve an AUC of over 0.98 while achieving 353X lower architectural complexity, 62X lower computational complexity, and 14.3X faster inference times on a Raspberry Pi. Clinical validation was also conducted, where select cases were reviewed and reported on by a practicing clinician (20 years of clinical practice) specializing in intensive care (ICU) and 15 years of expertise in POCUS interpretation. To advocate affordable healthcare and artificial intelligence for resource-constrained environments, we have made COVID-Net US open source and publicly available as part of the COVID-Net open source initiative.

Shirin Tavakoli Kafiabad, Andrea Schiffauerova, Ashkan Ebadi

Optimizing national scientific investment requires a clear understanding of evolving research trends and the demographic and geographical forces shaping them, particularly in light of commitments to equity, diversity, and inclusion. This study addresses this need by analyzing 18 years (2005-2022) of research proposals funded by the Natural Sciences and Engineering Research Council of Canada (NSERC). We conducted a comprehensive comparative evaluation of three topic modelling approaches: Latent Dirichlet Allocation (LDA), Structural Topic Modelling (STM), and BERTopic. We also introduced a novel algorithm, named COFFEE, designed to enable robust covariate effect estimation for BERTopic. This advancement addresses a significant gap, as BERTopic lacks a native function for covariate analysis, unlike the probabilistic STM. Our findings highlight that while all models effectively delineate core scientific domains, BERTopic outperformed by consistently identifying more granular, coherent, and emergent themes, such as the rapid expansion of artificial intelligence. Additionally, the covariate analysis, powered by COFFEE, confirmed distinct provincial research specializations and revealed consistent gender-based thematic patterns across various scientific disciplines. These insights offer a robust empirical foundation for funding organizations to formulate more equitable and impactful funding strategies, thereby enhancing the effectiveness of the scientific ecosystem.

Neel Patel, Alexander Wong, Ashkan Ebadi

Tuberculosis remains a critical global health issue, particularly in resource-limited and remote areas. Early detection is vital for treatment, yet the lack of skilled radiologists underscores the need for artificial intelligence (AI)-driven screening tools. Developing reliable AI models is challenging due to the necessity for large, high-quality datasets, which are costly to obtain. To tackle this, we propose a teacher--student framework which enhances both disease and symptom detection on chest X-rays by integrating two supervised heads and a self-supervised head. Our model achieves an accuracy of 98.85% for distinguishing between COVID-19, tuberculosis, and normal cases, and a macro-F1 score of 90.09% for multilabel symptom detection, significantly outperforming baselines. The explainability assessments also show the model bases its predictions on relevant anatomical features, demonstrating promise for deployment in clinical screening and triage settings.

Neel Patel, Alexander Wong, Ashkan Ebadi

Tuberculosis persists as a global health crisis, especially in resource-limited populations and remote regions, with more than 10 million individuals newly infected annually. It stands as a stark symbol of inequity in public health. Tuberculosis impacts roughly a quarter of the global populace, with the majority of cases concentrated in eight countries, accounting for two-thirds of all tuberculosis infections. Although a severe ailment, tuberculosis is both curable and manageable. However, early detection and screening of at-risk populations are imperative. Chest x-ray stands as the predominant imaging technique utilized in tuberculosis screening efforts. However, x-ray screening necessitates skilled radiologists, a resource often scarce, particularly in remote regions with limited resources. Consequently, there is a pressing need for artificial intelligence (AI)-powered systems to support clinicians and healthcare providers in swift screening. However, training a reliable AI model necessitates large-scale high-quality data, which can be difficult and costly to acquire. Inspired by these challenges, in this work, we introduce an explainable self-supervised self-train learning network tailored for tuberculosis case screening. The network achieves an outstanding overall accuracy of 98.14% and demonstrates high recall and precision rates of 95.72% and 99.44%, respectively, in identifying tuberculosis cases, effectively capturing clinically significant features.

Mohammadmahdi Toobaee, Andrea Schiffauerova, Ashkan Ebadi

The role of geographical proximity in facilitating inter-regional or inter-organizational collaborations has been studied thoroughly in recent years. However, the effect of geographical proximity on forming scientific collaborations at the individual level still needs to be addressed. Using publication data in the field of artificial intelligence from 2001 to 2019, in this work, the effect of geographical proximity on the likelihood of forming future scientific collaborations among researchers is studied. In addition, the interaction between geographical and network proximities is examined to see whether network proximity can substitute geographical proximity in encouraging long-distance scientific collaborations. Employing conventional and machine learning techniques, our results suggest that geographical distance impedes scientific collaboration at the individual level despite the tremendous improvements in transportation and communication technologies during recent decades. Moreover, our findings show that the effect of network proximity on the likelihood of scientific collaboration increases with geographical distance, implying that network proximity can act as a substitute for geographical proximity.

Hilda Azimi, Jianxing Zhang, Pengcheng Xi et al.

Chest radiography is an effective screening tool for diagnosing pulmonary diseases. In computer-aided diagnosis, extracting the relevant region of interest, i.e., isolating the lung region of each radiography image, can be an essential step towards improved performance in diagnosing pulmonary disorders. Methods: In this work, we propose a deep learning approach to enhance abnormal chest x-ray (CXR) identification performance through segmentations. Our approach is designed in a cascaded manner and incorporates two modules: a deep neural network with criss-cross attention modules (XLSor) for localizing lung region in CXR images and a CXR classification model with a backbone of a self-supervised momentum contrast (MoCo) model pre-trained on large-scale CXR data sets. The proposed pipeline is evaluated on Shenzhen Hospital (SH) data set for the segmentation module, and COVIDx data set for both segmentation and classification modules. Novel statistical analysis is conducted in addition to regular evaluation metrics for the segmentation module. Furthermore, the results of the optimized approach are analyzed with gradient-weighted class activation mapping (Grad-CAM) to investigate the rationale behind the classification decisions and to interpret its choices. Results and Conclusion: Different data sets, methods, and scenarios for each module of the proposed pipeline are examined for designing an optimized approach, which has achieved an accuracy of 0.946 in distinguishing abnormal CXR images (i.e., Pneumonia and COVID-19) from normal ones. Numerical and visual validations suggest that applying automated segmentation as a pre-processing step for classification improves the generalization capability and the performance of the classification models.

Siyuan He, Pengcheng Xi, Ashkan Ebadi et al.

Effective representation learning is the key in improving model performance for medical image analysis. In training deep learning models, a compromise often must be made between performance and trust, both of which are essential for medical applications. Moreover, models optimized with cross-entropy loss tend to suffer from unwarranted overconfidence in the majority class and over-cautiousness in the minority class. In this work, we integrate a new surrogate loss with self-supervised learning for computer-aided screening of COVID-19 patients using radiography images. In addition, we adopt a new quantification score to measure a model's trustworthiness. Ablation study is conducted for both the performance and the trust on feature learning methods and loss functions. Comparisons show that leveraging the new surrogate loss on self-supervised models can produce label-efficient networks that are both high-performing and trustworthy.

Elva Luz Crespo Neira, Ashkan Ebadi, Catherine Beaudry et al.

Incorporating existing knowledge is vital for innovating, discovering, and generating new ideas. Knowledge production through research and invention is the key to scientific and technological development. As an emerging technology, nanotechnology has already proved its great potential for the global economy, attracting considerable federal investments. Canada is reported as one of the major players in producing nanotechnology research. In this paper, we focused on the main drivers of knowledge production and diffusion by analyzing Canadian nanotechnology researchers. We hypothesized that knowledge production in Canadian nanotechnology is influenced by three key proximity factors, namely cognitive, geographical, and collaborative. Using statistical analysis, social network analysis, and machine learning techniques we comprehensively assessed the influence of the proximity factors on academic knowledge production. Our results not only prove a significant impact of the three key proximity factors but also their predictive potential.

Jianxing Zhang, Pengcheng Xi, Ashkan Ebadi et al.

The COVID-19 pandemic has had devastating effects on the well-being of the global population. The pandemic has been so prominent partly due to the high infection rate of the virus and its variants. In response, one of the most effective ways to stop infection is rapid diagnosis. The main-stream screening method, reverse transcription-polymerase chain reaction (RT-PCR), is time-consuming, laborious and in short supply. Chest radiography is an alternative screening method for the COVID-19 and computer-aided diagnosis (CAD) has proven to be a viable solution at low cost and with fast speed; however, one of the challenges in training the CAD models is the limited number of training data, especially at the onset of the pandemic. This becomes outstanding precisely when the quick and cheap type of diagnosis is critically needed for flattening the infection curve. To address this challenge, we propose the use of a low-shot learning approach named imprinted weights, taking advantage of the abundance of samples from known illnesses such as pneumonia to improve the detection performance on COVID-19.

Ashkan Ebadi, Pengcheng Xi, Alexander MacLean et al.

The COVID-19 pandemic continues to have a devastating effect on the health and well-being of the global population. Apart from the global health crises, the pandemic has also caused significant economic and financial difficulties and socio-physiological implications. Effective screening, triage, treatment planning, and prognostication of outcome plays a key role in controlling the pandemic. Recent studies have highlighted the role of point-of-care ultrasound imaging for COVID-19 screening and prognosis, particularly given that it is non-invasive, globally available, and easy-to-sanitize. Motivated by these attributes and the promise of artificial intelligence tools to aid clinicians, we introduce COVIDx-US, an open-access benchmark dataset of COVID-19 related ultrasound imaging data. The COVIDx-US dataset was curated from multiple sources and its current version, i.e., v1.2., consists of 150 lung ultrasound videos and 12,943 processed images of patients infected with COVID-19 infection, non-COVID-19 infection, other lung diseases/conditions, as well as normal control cases. The COVIDx-US is the largest open-access fully-curated dataset of its kind that has been systematically curated, processed, and validated specifically for the purpose of building and evaluating artificial intelligence algorithms and models.

Ashkan Ebadi, Pengcheng Xi, Stéphane Tremblay et al.

The outbreak of the novel coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been continuously affecting human lives and communities around the world in many ways, from cities under lockdown to new social experiences. Although in most cases COVID-19 results in mild illness, it has drawn global attention due to the extremely contagious nature of SARS-CoV-2. Governments and healthcare professionals, along with people and society as a whole, have taken any measures to break the chain of transition and flatten the epidemic curve. In this study, we used multiple data sources, i.e., PubMed and ArXiv, and built several machine learning models to characterize the landscape of current COVID-19 research by identifying the latent topics and analyzing the temporal evolution of the extracted research themes, publications similarity, and sentiments, within the time-frame of January- May 2020. Our findings confirm the types of research available in PubMed and ArXiv differ significantly, with the former exhibiting greater diversity in terms of COVID-19 related issues and the latter focusing more on intelligent systems/tools to predict/diagnose COVID-19. The special attention of the research community to the high-risk groups and people with complications was also confirmed.

Lasith Adhikari, Tezcan Ozrazgat-Baslanti, Paul Thottakkara et al.

Acute kidney injury (AKI) is a common and serious complication after a surgery which is associated with morbidity and mortality. The majority of existing perioperative AKI risk score prediction models are limited in their generalizability and do not fully utilize the physiological intraoperative time-series data. Thus, there is a need for intelligent, accurate, and robust systems, able to leverage information from large-scale data to predict patient's risk of developing postoperative AKI. A retrospective single-center cohort of 2,911 adult patients who underwent surgery at the University of Florida Health has been used for this study. We used machine learning and statistical analysis techniques to develop perioperative models to predict the risk of AKI (risk during the first 3 days, 7 days, and until the discharge day) before and after the surgery. In particular, we examined the improvement in risk prediction by incorporating three intraoperative physiologic time series data, i.e., mean arterial blood pressure, minimum alveolar concentration, and heart rate. For an individual patient, the preoperative model produces a probabilistic AKI risk score, which will be enriched by integrating intraoperative statistical features through a machine learning stacking approach inside a random forest classifier. We compared the performance of our model based on the area under the receiver operating characteristics curve (AUROC), accuracy and net reclassification improvement (NRI). The predictive performance of the proposed model is better than the preoperative data only model. For AKI-7day outcome: The AUC was 0.86 (accuracy was 0.78) in the proposed model, while the preoperative AUC was 0.84 (accuracy 0.76). Furthermore, with the integration of intraoperative features, we were able to classify patients who were misclassified in the preoperative model.